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Ghaed-Sharaf T, Ghatee MH. Synergistic aggregation of the ibuprofenate anion and a a double-strand imidazolium cation into vesicles for drug delivery: a simulation study. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.115874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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2
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Paulisch TO, Bornemann S, Herzog M, Kudruk S, Roling L, Linard Matos AL, Galla HJ, Gerke V, Winter R, Glorius F. An Imidazolium-Based Lipid Analogue as a Gene Transfer Agent. Chemistry 2020; 26:17176-17182. [PMID: 32720444 DOI: 10.1002/chem.202003466] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Indexed: 12/13/2022]
Abstract
A dicationic imidazolium salt is described and investigated towards its application for gene transfer. The polar head group and the long alkyl chains in the backbone contribute to a lipid-like behavior, while an alkyl ammonium group provides the ability for crucial electrostatic interaction for the transfection process. Detailed biophysical studies regarding its impact on biological membrane models and the propensity of vesicle fusion are presented. Fluorescence spectroscopy, atomic force microscopy and confocal fluorescence microscopy show that the imidazolium salt leads to negligible changes in lipid packing, while displaying distinct vesicle fusion properties. Cell culture experiments reveal that mixed liposomes containing the novel imidazolium salt can serve as plasmid DNA delivery vehicles. In contrast, a structurally similar imidazolium salt without a second positive charge showed no ability to support DNA transfection into cultured cells. Thus, we introduce a novel and variable structural motif for cationic lipids, expanding the field of lipofection agents.
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Affiliation(s)
- Tiffany O Paulisch
- Institute of Organic Chemistry, University of Münster, Corrensstraße 40, 48149, Münster, Germany
| | - Steffen Bornemann
- Physical Chemistry I-Biophysical Chemistry, TU Dortmund University, 44221, Dortmund, Germany
| | - Marius Herzog
- Physical Chemistry I-Biophysical Chemistry, TU Dortmund University, 44221, Dortmund, Germany
| | - Sergej Kudruk
- Institute of Medical Biochemistry, University of Münster, 48149, Münster, Germany
| | - Lena Roling
- Institute of Organic Chemistry, University of Münster, Corrensstraße 40, 48149, Münster, Germany
| | | | - Hans-Joachim Galla
- Institute of Biochemistry, University of Münster, 48149, Münster, Germany
| | - Volker Gerke
- Institute of Medical Biochemistry, University of Münster, 48149, Münster, Germany
| | - Roland Winter
- Physical Chemistry I-Biophysical Chemistry, TU Dortmund University, 44221, Dortmund, Germany
| | - Frank Glorius
- Institute of Organic Chemistry, University of Münster, Corrensstraße 40, 48149, Münster, Germany
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Kushnazarova RA, Mirgorodskaya AB, Lukashenko SS, Voloshina AD, Sapunova AS, Nizameev IR, Kadirov MK, Zakharova LY. Novel cationic surfactants with cleavable carbamate fragment: Tunable morphological behavior, solubilization of hydrophobic drugs and cellular uptake study. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.113894] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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4
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Nadimi H, Housaindokht MR, Moosavi F. The effect of anion on aggregation of amino acid ionic liquid: Atomistic simulation. J Mol Graph Model 2020; 101:107733. [PMID: 32931983 DOI: 10.1016/j.jmgm.2020.107733] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Revised: 08/22/2020] [Accepted: 08/31/2020] [Indexed: 12/26/2022]
Abstract
Aggregation behavior of dodecyl betaine chloride [DB][Cl], as an amino acid ionic liquid, and dodecyl betaine N-acetyl glycinate [DB][AG], as a bio ionic liquid, in aqueous media was studied through molecular dynamics simulation. The aggregating was investigated by radial distribution function, coordination numbers, and hydrogen bond numbers. The results demonstrated the hydrogen bond between [DB]+ and [AG]- that leads to aggregation. The number of hydrogen bonds of [DB][AG] is greater than [DB][Cl] and causes a decrease in the gradient of the mean square displacement, thereby the diffusion coefficient of cation, anion, and water in [DB][AG]. The results point to a stable aggregation of [DB][AG] which is in agreement with the results of root mean square deviations. The aggregation number for [DB][AG] is 50 and 44 for [DB][Cl]. Computing the radius of gyration and geometrical radius shows that the aggregation size is 23.0 Å and 26.4 Å for [DB][AG] and [DB][Cl], respectively. It was also observed that the shape of the aggregates is quasi-spherical that points to a sub-diffusive regime.
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Affiliation(s)
- Hanieh Nadimi
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, 9177948974, Iran
| | | | - Fatemeh Moosavi
- Department of Chemistry, Faculty of Science, Ferdowsi University of Mashhad, Mashhad, 9177948974, Iran.
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Ma W, Sun S, Li W, Zhang Z, Lin Z, Xia Y, Yuan B, Yang K. Individual Roles of Peptides PGLa and Magainin 2 in Synergistic Membrane Poration. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:7190-7199. [PMID: 32529830 DOI: 10.1021/acs.langmuir.0c00194] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
Synergy between antimicrobial peptides PGLa and Magainin 2 (MAG2) provides an efficient way to enhance their antimicrobial ability. However, the underlying molecular mechanism of such synergy, especially the individual roles of each peptide, remains poorly understood. We combined a giant unilamellar vesicle leakage assay, in situ interfacial photovoltage testing, and molecular dynamics to investigate membrane poration under the action of PGLa, MAG2, or a PGLa/MAG2 mixture. Our results clearly show the different membrane action modes of the three systems and demonstrate the importance of forming PGLa-MAG2 heterodimers in the membrane poration process. PGLa inserted into and extracted from a membrane rapidly and continually with minimal aggregation and produced only transient, small pores. In contrast, MAG2 peptides tended to aggregate together on the membrane surface or only shallowly embed in the membrane. Additionally, the PGLa and MAG2 residues were well integrated into the membrane via the formation of PGLa-MAG2 heterodimers. The membrane defect produced by the rapid insertion of PGLa was stabilized by MAG2, which further recruited other peptides for the formation of PGLa-MAG2 heterodimers and even heterodimer clusters. Growth in pore size then occurred in a step-by-step process involving the formation and assembly of heterodimer clusters within the membrane. Our results provide insight into the complicated synergy that occurs between PGLa and MAG2 during membrane poration and will assist in the design of new antimicrobial peptides.
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Affiliation(s)
- Wendong Ma
- Center for Soft Condensed Matter Physics and Interdisciplinary Research & School of Physical Science and Technology, Soochow University, Suzhou 215006, P. R. China
| | - Shuqing Sun
- Center for Soft Condensed Matter Physics and Interdisciplinary Research & School of Physical Science and Technology, Soochow University, Suzhou 215006, P. R. China
| | - Wenwen Li
- Center for Soft Condensed Matter Physics and Interdisciplinary Research & School of Physical Science and Technology, Soochow University, Suzhou 215006, P. R. China
| | - Zhihong Zhang
- Center for Soft Condensed Matter Physics and Interdisciplinary Research & School of Physical Science and Technology, Soochow University, Suzhou 215006, P. R. China
| | - Zhao Lin
- Center for Soft Condensed Matter Physics and Interdisciplinary Research & School of Physical Science and Technology, Soochow University, Suzhou 215006, P. R. China
| | - Yu Xia
- Center for Soft Condensed Matter Physics and Interdisciplinary Research & School of Physical Science and Technology, Soochow University, Suzhou 215006, P. R. China
| | - Bing Yuan
- Center for Soft Condensed Matter Physics and Interdisciplinary Research & School of Physical Science and Technology, Soochow University, Suzhou 215006, P. R. China
| | - Kai Yang
- Center for Soft Condensed Matter Physics and Interdisciplinary Research & School of Physical Science and Technology, Soochow University, Suzhou 215006, P. R. China
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Kahana A, Lancet D. Protobiotic Systems Chemistry Analyzed by Molecular Dynamics. Life (Basel) 2019; 9:E38. [PMID: 31083329 PMCID: PMC6617412 DOI: 10.3390/life9020038] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Revised: 05/06/2019] [Accepted: 05/08/2019] [Indexed: 12/16/2022] Open
Abstract
Systems chemistry has been a key component of origin of life research, invoking models of life's inception based on evolving molecular networks. One such model is the graded autocatalysis replication domain (GARD) formalism embodied in a lipid world scenario, which offers rigorous computer simulation based on defined chemical kinetics equations. GARD suggests that the first pre-RNA life-like entities could have been homeostatically-growing assemblies of amphiphiles, undergoing compositional replication and mutations, as well as rudimentary selection and evolution. Recent progress in molecular dynamics has provided an experimental tool to study complex biological phenomena such as protein folding, ligand-receptor interactions, and micellar formation, growth, and fission. The detailed molecular definition of GARD and its inter-molecular catalytic interactions make it highly compatible with molecular dynamics analyses. We present a roadmap for simulating GARD's kinetic and thermodynamic behavior using various molecular dynamics methodologies. We review different approaches for testing the validity of the GARD model by following micellar accretion and fission events and examining compositional changes over time. Near-future computational advances could provide empirical delineation for further system complexification, from simple compositional non-covalent assemblies towards more life-like protocellular entities with covalent chemistry that underlies metabolism and genetic encoding.
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Affiliation(s)
- Amit Kahana
- Dept. Molecular Genetics, The Weizmann Institute of Science, Rehovot 7610010, Israel.
| | - Doron Lancet
- Dept. Molecular Genetics, The Weizmann Institute of Science, Rehovot 7610010, Israel.
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Dib N, Silber JJ, Correa NM, Falcone RD. Combination of a protic ionic liquid-like surfactant and biocompatible solvents to generate environmentally friendly anionic reverse micelles. NEW J CHEM 2019. [DOI: 10.1039/c9nj02268f] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
imim–DEHP, a versatile protic IL-like surfactant to formulate aqueous RMs in biocompatible non-polar solvents.
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Affiliation(s)
- Nahir Dib
- Instituto para el Desarrollo Agroindustrial y de la Salud (IDAS)
- CONICET-UNRC
- Departamento de Química
- Universidad Nacional de Río Cuarto
- C. P. X5804BYA Río Cuarto
| | - Juana J. Silber
- Instituto para el Desarrollo Agroindustrial y de la Salud (IDAS)
- CONICET-UNRC
- Departamento de Química
- Universidad Nacional de Río Cuarto
- C. P. X5804BYA Río Cuarto
| | - N. Mariano Correa
- Instituto para el Desarrollo Agroindustrial y de la Salud (IDAS)
- CONICET-UNRC
- Departamento de Química
- Universidad Nacional de Río Cuarto
- C. P. X5804BYA Río Cuarto
| | - R. Dario Falcone
- Instituto para el Desarrollo Agroindustrial y de la Salud (IDAS)
- CONICET-UNRC
- Departamento de Química
- Universidad Nacional de Río Cuarto
- C. P. X5804BYA Río Cuarto
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