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López-Ríos de Castro R, Ziolek RM, Lorenz CD. Topology-controlled self-assembly of amphiphilic block copolymers. NANOSCALE 2023; 15:15230-15237. [PMID: 37671739 PMCID: PMC10540979 DOI: 10.1039/d3nr01204b] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 08/16/2023] [Indexed: 09/07/2023]
Abstract
Contemporary synthetic chemistry approaches can be used to yield a range of distinct polymer topologies with precise control. The topology of a polymer strongly influences its self-assembly into complex nanostructures however a clear mechanistic understanding of the relationship between polymer topology and self-assembly has not yet been developed. In this work, we use atomistic molecular dynamics simulations to provide a nanoscale picture of the self-assembly of three poly(ethylene oxide)-poly(methyl acrylate) block copolymers with different topologies into micelles. We find that the topology affects the ability of the micelle to form a compact hydrophobic core, which directly affects its stability. Also, we apply unsupervised machine learning techniques to show that the topology of a polymer affects its ability to take a conformation in response to the local environment within the micelles. This work provides foundations for the rational design of polymer nanostructures based on their underlying topology.
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Affiliation(s)
- Raquel López-Ríos de Castro
- Biological Physics and Soft Matter Group, Department of Physics, King's College London, London, WC2R 2LS, UK.
- Department of Chemistry, King's College London, London, SE1 1DB, UK
| | - Robert M Ziolek
- Biological Physics and Soft Matter Group, Department of Physics, King's College London, London, WC2R 2LS, UK.
| | - Christian D Lorenz
- Biological Physics and Soft Matter Group, Department of Physics, King's College London, London, WC2R 2LS, UK.
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Ebe M, Soga A, Fujiwara K, Ree BJ, Marubayashi H, Hagita K, Imasaki A, Baba M, Yamamoto T, Tajima K, Deguchi T, Jinnai H, Isono T, Satoh T. Rotaxane Formation of Multicyclic Polydimethylsiloxane in a Silicone Network: A Step toward Constructing "Macro-Rotaxanes" from High-Molecular-Weight Axle and Wheel Components. Angew Chem Int Ed Engl 2023; 62:e202304493. [PMID: 37458573 DOI: 10.1002/anie.202304493] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2023] [Indexed: 08/24/2023]
Abstract
Rotaxanes consisting of a high-molecular-weight axle and wheel components (macro-rotaxanes) have high structural freedom, and are attractive for soft-material applications. However, their synthesis remains underexplored. Here, we investigated macro-rotaxane formation by the topological trapping of multicyclic polydimethylsiloxanes (mc-PDMSs) in silicone networks. mc-PDMS with different numbers of cyclic units and ring sizes was synthesized by cyclopolymerization of a α,ω-norbornenyl-functionalized PDMS. Silicone networks were prepared in the presence of 10-60 wt % mc-PDMS, and the trapping efficiency of mc-PDMS was determined. In contrast to monocyclic PDMS, mc-PDMSs with more cyclic units and larger ring sizes can be quantitatively trapped in the network as macro-rotaxanes. The damping performance of a 60 wt % mc-PDMS-blended silicone network was evaluated, revealing a higher tan δ value than the bare PDMS network. Thus, macro-rotaxanes are promising as non-leaching additives for network polymers.
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Affiliation(s)
- Minami Ebe
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-8628, Japan
| | - Asuka Soga
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-8628, Japan
| | - Kaiyu Fujiwara
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo, 060-8628, Japan
| | - Brian J Ree
- Division of Applied Chemistry, Faculty of Engineering, Hokkaido University, Sapporo, 060-8628, Japan
| | - Hironori Marubayashi
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, 980-8577, Japan
| | - Katsumi Hagita
- Department of Applied Physics, National Defense Academy, Yokosuka, 239-8686, Japan
| | - Atsushi Imasaki
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, 980-8577, Japan
| | - Miru Baba
- Division of Applied Chemistry, Faculty of Engineering, Hokkaido University, Sapporo, 060-8628, Japan
| | - Takuya Yamamoto
- Division of Applied Chemistry, Faculty of Engineering, Hokkaido University, Sapporo, 060-8628, Japan
| | - Kenji Tajima
- Division of Applied Chemistry, Faculty of Engineering, Hokkaido University, Sapporo, 060-8628, Japan
| | - Tetsuo Deguchi
- Department of Physics, Faculty of Core Research, Ochanomizu University, Tokyo, 112-8610, Japan
| | - Hiroshi Jinnai
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, 980-8577, Japan
| | - Takuya Isono
- Division of Applied Chemistry, Faculty of Engineering, Hokkaido University, Sapporo, 060-8628, Japan
| | - Toshifumi Satoh
- Division of Applied Chemistry, Faculty of Engineering, Hokkaido University, Sapporo, 060-8628, Japan
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Sarkar D, Kulke M, Vermaas JV. LongBondEliminator: A Molecular Simulation Tool to Remove Ring Penetrations in Biomolecular Simulation Systems. Biomolecules 2023; 13:biom13010107. [PMID: 36671493 PMCID: PMC9856086 DOI: 10.3390/biom13010107] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 12/30/2022] [Accepted: 01/01/2023] [Indexed: 01/07/2023] Open
Abstract
We develop a workflow, implemented as a plugin to the molecular visualization program VMD, that can fix ring penetrations with minimal user input. LongBondEliminator, detects ring piercing artifacts by the long, strained bonds that are the local minimum energy conformation during minimization for some assembled simulation system. The LongBondEliminator tool then automatically treats regions near these long bonds using multiple biases applied through NAMD. By combining biases implemented through the collective variables module, density-based forces, and alchemical techniques in NAMD, LongBondEliminator will iteratively alleviate long bonds found within molecular simulation systems. Through three concrete examples with increasing complexity, a lignin polymer, an viral capsid assembly, and a large, highly glycosylated protein aggrecan, we demonstrate the utility for this method in eliminating ring penetrations from classical MD simulation systems. The tool is available via gitlab as a VMD plugin, and has been developed to be generically useful across a variety of biomolecular simulations.
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Effects of macromonomer chain length, solvent and concentration on the cyclization kinetics during AB-type step-growth polymerization. POLYMER 2023. [DOI: 10.1016/j.polymer.2023.125730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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Hagita K, Murashima T, Sakata N, Shimokawa K, Deguchi T, Uehara E, Fujiwara S. Molecular Dynamics of Topological Barriers on the Crystallization Behavior of Ring Polyethylene Melts with Trefoil Knots. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01843] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Katsumi Hagita
- Department of Applied Physics, National Defense Academy, 1-10-20, Hashirimizu, Yokosuka239-8686, Japan
| | - Takahiro Murashima
- Department of Physics, Tohoku University, 6-3, Aramaki-aza-Aoba, Aoba-ku, Sendai980-8578, Japan
| | - Naoki Sakata
- Department of Mathematics, Saitama University, 255, Shimo-Okubo, Sakura-ku, Saitama338-8570, Japan
- Department of Physics, Ochanomizu University, 2-1-1, Otsuka, Bunkyo-ku, Tokyo112-8610, Japan
| | - Koya Shimokawa
- Department of Mathematics, Saitama University, 255, Shimo-Okubo, Sakura-ku, Saitama338-8570, Japan
- Department of Mathematics, Ochanomizu University, 2-1-1, Otsuka, Bunkyo-ku, Tokyo112-8610, Japan
| | - Tetsuo Deguchi
- Department of Physics, Ochanomizu University, 2-1-1, Otsuka, Bunkyo-ku, Tokyo112-8610, Japan
| | - Erica Uehara
- Department of Physics, Ochanomizu University, 2-1-1, Otsuka, Bunkyo-ku, Tokyo112-8610, Japan
| | - Susumu Fujiwara
- Faculty of Materials Science and Engineering, Kyoto Institute of Technology, Matsugasaki,
Sakyo-ku, Kyoto606-8585, Japan
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Murashima T, Hagita K, Kawakatsu T. Topological Transition in Multicyclic Chains with Structural Symmetry Inducing Stress-Overshoot Phenomena in Multicyclic/Linear Blends under Biaxial Elongational Flow. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Takahiro Murashima
- Department of Physics, Tohoku University, 6-3 Aramaki-aza-Aoba, Aoba-ku, Sendai980-8578, Japan
| | - Katsumi Hagita
- Department of Applied Physics, National Defense Academy, 1-10-20 Hashirimizu, Yokosuka239-8686, Japan
| | - Toshihiro Kawakatsu
- Department of Physics, Tohoku University, 6-3 Aramaki-aza-Aoba, Aoba-ku, Sendai980-8578, Japan
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Guo F, Wu J, Yang Z, Li K, Zhang L. Penetration of linear chains into semiflexible knotted rings in linear-ring blends. POLYMER 2022. [DOI: 10.1016/j.polymer.2022.125248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/15/2022]
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Hagita K, Murashima T, Ohkuma T, Jinnai H. Ring-Filling Effect on Stress–Strain Curves of Randomly End-Linked Tetra-Arm Prepolymers. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c00451] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Katsumi Hagita
- Department of Applied Physics, National Defense Academy, 1-10-20, Hashirimizu, Yokosuka 239-8686, Japan
| | - Takahiro Murashima
- Department of Physics, Tohoku University, 6-3, Aramaki-aza-Aoba, Aoba-ku, Sendai 980-8578, Japan
| | - Takahiro Ohkuma
- Digital Engineering Division, Bridgestone Corporation, 3-1-1, Ogawahigashi, Kodaira, Tokyo 187-8531, Japan
| | - Hiroshi Jinnai
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1, Katahira, Aoba-ku, Sendai 980-8577, Japan
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Hagita K, Murashima T, Ebe M, Isono T, Satoh T. Trapping probabilities of multiple rings in end-linked gels. POLYMER 2022. [DOI: 10.1016/j.polymer.2022.124683] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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10
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Demonstration of reinforcement in polymer composite with rings penetrating the diamond-lattice network. POLYMER 2022. [DOI: 10.1016/j.polymer.2022.124637] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Choi JH, Kwon T, Sung BJ. Relative Chain Flexibility Determines the Spatial Arrangement and the Diffusion of a Single Ring Chain in Linear Chain Films. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c01937] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Jong Ho Choi
- Department of Chemistry, Sogang University, Seoul 04107, Republic of Korea
| | - Taejin Kwon
- Department of Chemistry, Sogang University, Seoul 04107, Republic of Korea
| | - Bong June Sung
- Department of Chemistry, Sogang University, Seoul 04107, Republic of Korea
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