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Schubert L, Nenninger C, Nöth M, Belthle T, de Lange RD, Pich A, Schwaneberg U, Wöll D. Nanoscopic visualization of microgel-immobilized cytochrome P450 enzymes and their local activity. NANOSCALE 2024; 16:20194-20201. [PMID: 39387810 DOI: 10.1039/d4nr03435j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/15/2024]
Abstract
Microgels provide a controlled microenvironment for enzymes, protecting them from degradation while enhancing stability and activity. Their customizable and biocompatible structure allows for targeted delivery and controlled release, making them ideal for transporting and preserving enzyme function in various applications. For such applications, detailed knowledge of the distribution of enzymes and their activity within the microgels is essential. We present a combination of different localization-based super-resolution fluorescence microscopy measurements to localise single Cytochrome P450 BM3 enzymes and compare their local catalytic activity.
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Affiliation(s)
- Lukas Schubert
- Institute of Physical Chemistry, RWTH Aachen University, Landoltweg 2, 52074 Aachen, Germany.
| | - Chiara Nenninger
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Maximilian Nöth
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Thomke Belthle
- DWI - Leibniz-Institute for Interactive Materials, Forckenbeckstraße 50, 52074 Aachen, Germany
- Functional and Interactive Polymers, Institute of Technical and Macromolecular Chemistry, RWTH Aachen University, Worringerweg 2, 52074 Aachen, Germany
| | - Robert Dirk de Lange
- Institute of Physical Chemistry, RWTH Aachen University, Landoltweg 2, 52074 Aachen, Germany.
| | - Andrij Pich
- DWI - Leibniz-Institute for Interactive Materials, Forckenbeckstraße 50, 52074 Aachen, Germany
- Functional and Interactive Polymers, Institute of Technical and Macromolecular Chemistry, RWTH Aachen University, Worringerweg 2, 52074 Aachen, Germany
- Aachen Maastricht Institute for Biobased Materials (AMIBM), Maastricht University, Brightlands Chemelot Campus, Urmonderbaan 22, 6167 RD Geleen, The Netherlands
| | - Ulrich Schwaneberg
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
- DWI - Leibniz-Institute for Interactive Materials, Forckenbeckstraße 50, 52074 Aachen, Germany
| | - Dominik Wöll
- Institute of Physical Chemistry, RWTH Aachen University, Landoltweg 2, 52074 Aachen, Germany.
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2
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Huijben TA, Mahajan S, Fahim M, Zijlstra P, Marie R, Mortensen KI. Point-Spread Function Deformations Unlock 3D Localization Microscopy on Spherical Nanoparticles. ACS NANO 2024; 18:29832-29845. [PMID: 39411831 PMCID: PMC11526427 DOI: 10.1021/acsnano.4c09719] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Revised: 10/03/2024] [Accepted: 10/08/2024] [Indexed: 10/30/2024]
Abstract
Nanoparticles (NPs) have proven their applicability in biosensing, drug delivery, and photothermal therapy, but their performance depends critically on the distribution and number of functional groups on their surface. When studying surface functionalization using super-resolution microscopy, the NP modifies the fluorophore's point-spread function (PSF). This leads to systematic mislocalizations in conventional analyses employing Gaussian PSFs. Here, we address this shortcoming by deriving the analytical PSF model for a fluorophore near a spherical NP. Its calculation is four orders of magnitude faster than numerical approaches and thus feasible for direct use in localization algorithms. We fit this model to individual 2D images from DNA-PAINT experiments on DNA-coated gold NPs and demonstrate extraction of the 3D positions of functional groups with <5 nm precision, revealing inhomogeneous surface coverage. Our method is exact, fast, accessible, and poised to become the standard in super-resolution imaging of NPs for biosensing and drug delivery applications.
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Affiliation(s)
- Teun A.P.M. Huijben
- Department
of Health Technology, Technical University
of Denmark (DTU), Kongens
Lyngby 2800, Denmark
| | - Sarojini Mahajan
- Department
of Applied Physics and Science Education, Eindhoven University of Technology (TU/e), Eindhoven 5600 MB, The Netherlands
| | - Masih Fahim
- Department
of Health Technology, Technical University
of Denmark (DTU), Kongens
Lyngby 2800, Denmark
| | - Peter Zijlstra
- Department
of Applied Physics and Science Education, Eindhoven University of Technology (TU/e), Eindhoven 5600 MB, The Netherlands
| | - Rodolphe Marie
- Department
of Health Technology, Technical University
of Denmark (DTU), Kongens
Lyngby 2800, Denmark
| | - Kim I. Mortensen
- Department
of Health Technology, Technical University
of Denmark (DTU), Kongens
Lyngby 2800, Denmark
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3
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Ezendam S, Gargiulo J, Sousa-Castillo A, Lee JB, Nam YS, Maier SA, Cortés E. Spatial Distributions of Single-Molecule Reactivity in Plasmonic Catalysis. ACS NANO 2024; 18:451-460. [PMID: 37971988 PMCID: PMC10786159 DOI: 10.1021/acsnano.3c07833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2023] [Revised: 10/24/2023] [Accepted: 10/25/2023] [Indexed: 11/19/2023]
Abstract
Plasmonic catalysts have the potential to accelerate and control chemical reactions with light by exploiting localized surface plasmon resonances. However, the mechanisms governing plasmonic catalysis are not simple to decouple. Several plasmon-derived phenomena, such as electromagnetic field enhancements, temperature, or the generation of charge carriers, can affect the reactivity of the system. These effects are convoluted with the inherent (nonplasmonic) catalytic properties of the metal surface. Disentangling these coexisting effects is challenging but is the key to rationally controlling reaction pathways and enhancing reaction rates. This study utilizes super-resolution fluorescence microscopy to examine the mechanisms of plasmonic catalysis at the single-particle level. The reduction reaction of resazurin to resorufin in the presence of Au nanorods coated with a porous silica shell is investigated in situ. This allows the determination of reaction rates with a single-molecule sensitivity and subparticle resolution. By variation of the irradiation wavelength, it is possible to examine two different regimes: photoexcitation of the reactant molecules and photoexcitation of the nanoparticle's plasmon resonance. In addition, the measured spatial distribution of reactivity allows differentiation between superficial and far-field effects. Our results indicate that the reduction of resazurin can occur through more than one reaction pathway, being most efficient when the reactant is photoexcited and is in contact with the Au surface. In addition, it was found that the spatial distribution of enhancements varies, depending on the underlying mechanism. These findings contribute to the fundamental understanding of plasmonic catalysis and the rational design of future plasmonic nanocatalysts.
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Affiliation(s)
- Simone Ezendam
- Nanoinstitute
Munich, Faculty of Physics, Ludwig-Maximilians-Universität, 80539 München, Germany
| | - Julian Gargiulo
- Nanoinstitute
Munich, Faculty of Physics, Ludwig-Maximilians-Universität, 80539 München, Germany
| | - Ana Sousa-Castillo
- Nanoinstitute
Munich, Faculty of Physics, Ludwig-Maximilians-Universität, 80539 München, Germany
| | - Joong Bum Lee
- Department
of Materials Science and Engineering, Korea
Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
| | - Yoon Sung Nam
- Department
of Materials Science and Engineering, Korea
Advanced Institute of Science and Technology, Daejeon 34141, Republic of Korea
| | - Stefan A. Maier
- Nanoinstitute
Munich, Faculty of Physics, Ludwig-Maximilians-Universität, 80539 München, Germany
- Department
of Physics, Imperial College London, London SW7 2AZ, United Kingdom
- School
of Physics and Astronomy, Monash University, Clayton, Victoria 3800, Australia
| | - Emiliano Cortés
- Nanoinstitute
Munich, Faculty of Physics, Ludwig-Maximilians-Universität, 80539 München, Germany
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4
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Dery S, Friedman B, Shema H, Gross E. Mechanistic Insights Gained by High Spatial Resolution Reactivity Mapping of Homogeneous and Heterogeneous (Electro)Catalysts. Chem Rev 2023; 123:6003-6038. [PMID: 37037476 PMCID: PMC10176474 DOI: 10.1021/acs.chemrev.2c00867] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/12/2023]
Abstract
The recent development of high spatial resolution microscopy and spectroscopy tools enabled reactivity analysis of homogeneous and heterogeneous (electro)catalysts at previously unattainable resolution and sensitivity. These techniques revealed that catalytic entities are more heterogeneous than expected and local variations in reaction mechanism due to divergences in the nature of active sites, such as their atomic properties, distribution, and accessibility, occur both in homogeneous and heterogeneous (electro)catalysts. In this review, we highlight recent insights in catalysis research that were attained by conducting high spatial resolution studies. The discussed case studies range from reactivity detection of single particles or single molecular catalysts, inter- and intraparticle communication analysis, and probing the influence of catalysts distribution and accessibility on the resulting reactivity. It is demonstrated that multiparticle and multisite reactivity analyses provide unique knowledge about reaction mechanism that could not have been attained by conducting ensemble-based, averaging, spectroscopy measurements. It is highlighted that the integration of spectroscopy and microscopy measurements under realistic reaction conditions will be essential to bridge the gap between model-system studies and real-world high spatial resolution reactivity analysis.
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Affiliation(s)
- Shahar Dery
- Institute of Chemistry and The Center for Nanoscience and Nanotechnology, The Hebrew University, Jerusalem 91904, Israel
| | - Barak Friedman
- Institute of Chemistry and The Center for Nanoscience and Nanotechnology, The Hebrew University, Jerusalem 91904, Israel
| | - Hadar Shema
- Institute of Chemistry and The Center for Nanoscience and Nanotechnology, The Hebrew University, Jerusalem 91904, Israel
| | - Elad Gross
- Institute of Chemistry and The Center for Nanoscience and Nanotechnology, The Hebrew University, Jerusalem 91904, Israel
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5
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Elias RC, Linic S. Elucidating the Roles of Local and Nonlocal Rate Enhancement Mechanisms in Plasmonic Catalysis. J Am Chem Soc 2022; 144:19990-19998. [DOI: 10.1021/jacs.2c08561] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Rachel C. Elias
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States
- Catalysis Science and Technology Institute, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Suljo Linic
- Department of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States
- Catalysis Science and Technology Institute, University of Michigan, Ann Arbor, Michigan 48109, United States
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Joshi G, Mir AQ, Layek A, Ali A, Aziz ST, Khatua S, Dutta A. Plasmon-Based Small-Molecule Activation: A New Dawn in the Field of Solar-Driven Chemical Transformation. ACS Catal 2022. [DOI: 10.1021/acscatal.1c05245] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Gayatri Joshi
- Chemistry Discipline, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India
| | - Ab Qayoom Mir
- Chemistry Discipline, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India
| | - Arkaprava Layek
- Chemistry Department, Indian Institute of Technology Bombay, Powai, Maharashtra 400076, India
| | - Afsar Ali
- Chemistry Discipline, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India
| | - Sk. Tarik Aziz
- Chemistry Department, Indian Institute of Technology Bombay, Powai, Maharashtra 400076, India
| | - Saumyakanti Khatua
- Chemistry Discipline, Indian Institute of Technology Gandhinagar, Palaj, Gujarat 382355, India
| | - Arnab Dutta
- Chemistry Department, Indian Institute of Technology Bombay, Powai, Maharashtra 400076, India
- Interdisciplinary Program in Climate Studies, Indian Institute of Technology Bombay, Powai, Maharashtra 400076, India
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7
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Koenderink AF, Tsukanov R, Enderlein J, Izeddin I, Krachmalnicoff V. Super-resolution imaging: when biophysics meets nanophotonics. NANOPHOTONICS (BERLIN, GERMANY) 2022; 11:169-202. [PMID: 39633878 PMCID: PMC11501358 DOI: 10.1515/nanoph-2021-0551] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Revised: 11/26/2021] [Accepted: 11/29/2021] [Indexed: 12/07/2024]
Abstract
Probing light-matter interaction at the nanometer scale is one of the most fascinating topics of modern optics. Its importance is underlined by the large span of fields in which such accurate knowledge of light-matter interaction is needed, namely nanophotonics, quantum electrodynamics, atomic physics, biosensing, quantum computing and many more. Increasing innovations in the field of microscopy in the last decade have pushed the ability of observing such phenomena across multiple length scales, from micrometers to nanometers. In bioimaging, the advent of super-resolution single-molecule localization microscopy (SMLM) has opened a completely new perspective for the study and understanding of molecular mechanisms, with unprecedented resolution, which take place inside the cell. Since then, the field of SMLM has been continuously improving, shifting from an initial drive for pushing technological limitations to the acquisition of new knowledge. Interestingly, such developments have become also of great interest for the study of light-matter interaction in nanostructured materials, either dielectric, metallic, or hybrid metallic-dielectric. The purpose of this review is to summarize the recent advances in the field of nanophotonics that have leveraged SMLM, and conversely to show how some concepts commonly used in nanophotonics can benefit the development of new microscopy techniques for biophysics. To this aim, we will first introduce the basic concepts of SMLM and the observables that can be measured. Then, we will link them with their corresponding physical quantities of interest in biophysics and nanophotonics and we will describe state-of-the-art experiments that apply SMLM to nanophotonics. The problem of localization artifacts due to the interaction of the fluorescent emitter with a resonant medium and possible solutions will be also discussed. Then, we will show how the interaction of fluorescent emitters with plasmonic structures can be successfully employed in biology for cell profiling and membrane organization studies. We present an outlook on emerging research directions enabled by the synergy of localization microscopy and nanophotonics.
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Affiliation(s)
- A. Femius Koenderink
- Center for Nanophotonics, AMOLF, Science Park 104, 1098 XGAmsterdam, The Netherlands
| | - Roman Tsukanov
- III. Institute of Physics – Biophysics, Georg August University, Friedrich-Hund-Platz 1,37077Göttingen, Germany
| | - Jörg Enderlein
- III. Institute of Physics – Biophysics, Georg August University, Friedrich-Hund-Platz 1,37077Göttingen, Germany
- Cluster of Excellence “Multiscale Bioimaging: from Molecular Machines to Networks of Excitable Cells” (MBExC), Georg August University, 37077Göttingen, Germany
| | - Ignacio Izeddin
- Institut Langevin - Ondes et Images, ESPCI Paris, Université PSL, CNRS, 1, rue Jussieu, 75005Paris, France
| | - Valentina Krachmalnicoff
- Institut Langevin - Ondes et Images, ESPCI Paris, Université PSL, CNRS, 1, rue Jussieu, 75005Paris, France
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8
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Qian ZH, Cui JM, Luo XW, Zheng YX, Huang YF, Ai MZ, He R, Li CF, Guo GC. Super-resolved Imaging of a Single Cold Atom on a Nanosecond Timescale. PHYSICAL REVIEW LETTERS 2021; 127:263603. [PMID: 35029497 DOI: 10.1103/physrevlett.127.263603] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2021] [Revised: 10/03/2021] [Accepted: 11/29/2021] [Indexed: 06/14/2023]
Abstract
In cold atomic systems, fast and high-resolution microscopy of individual atoms is crucial, since it can provide direct information on the dynamics and correlations of the system. Here, we demonstrate nanosecond-scale two-dimensional stroboscopic pictures of a single trapped ion beyond the optical diffraction limit, by combining the main idea of ground-state depletion microscopy with quantum-state transition control in cold atoms. We achieve a spatial resolution up to 175 nm using a NA=0.1 objective in the experiment, which represents a more than tenfold improvement compared with direct fluorescence imaging. To show the potential of this method, we apply it to observe the secular motion of the trapped ion; we demonstrate a temporal resolution up to 50 ns with a displacement detection sensitivity of 10 nm. Our method provides a powerful tool for probing particle positions, momenta, and correlations, as well as their dynamics in cold atomic systems.
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Affiliation(s)
- Zhong-Hua Qian
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, 230026, China
- CAS Center For Excellence in Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Jin-Ming Cui
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, 230026, China
- CAS Center For Excellence in Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Xi-Wang Luo
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, 230026, China
- CAS Center For Excellence in Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Yong-Xiang Zheng
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, 230026, China
- CAS Center For Excellence in Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Yun-Feng Huang
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, 230026, China
- CAS Center For Excellence in Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Ming-Zhong Ai
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, 230026, China
- CAS Center For Excellence in Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Ran He
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, 230026, China
- CAS Center For Excellence in Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Chuan-Feng Li
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, 230026, China
- CAS Center For Excellence in Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, 230026, China
| | - Guang-Can Guo
- CAS Key Laboratory of Quantum Information, University of Science and Technology of China, Hefei, 230026, China
- CAS Center For Excellence in Quantum Information and Quantum Physics, University of Science and Technology of China, Hefei, 230026, China
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9
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Bloksma F, Zijlstra P. Imaging and Localization of Single Emitters near Plasmonic Particles of Different Size, Shape, and Material. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2021; 125:22084-22092. [PMID: 34676018 PMCID: PMC8521989 DOI: 10.1021/acs.jpcc.1c06665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 09/20/2021] [Indexed: 06/13/2023]
Abstract
Colloidal plasmonic materials are increasingly used in biosensing and catalysis, which has sparked the use of super-resolution localization microscopy to visualize processes at the interface of the particles. We quantify the effect of particle-emitter coupling on super-resolution localization accuracy by simulating the point spread function (PSF) of single emitters near a plasmonic nanoparticle. Using a computationally inexpensive boundary element method, we investigate a broad range of conditions allowing us to compare the simulated localization accuracy to reported experimental results. We identify regimes where the PSF is not Gaussian anymore, resulting in large mislocalizations due to the appearance of multilobed PSFs. Such exotic PSFs occur when near-field excitation of quadrupole plasmons is efficient but unexpectedly also occur for large particle-emitter spacing where the coherent emission from the particle and emitter results in anisotropic emission patterns. We provide guidelines to enable faithful localization microscopy near colloidal plasmonic materials, which indicate that simply decreasing the coupling between particle and molecule is not sufficient for faithful super-resolution imaging.
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