Unexpected Huge Dimerization Ratio in One-Dimensional Carbon Atomic Chains

The Formation and Transformation of Low-Dimensional Carbon Nanomaterials by Electron Irradiation

Low-dimensional materials based on graphene or graphite show a large variety of phenomena when they are subjected to irradiation with energetic electrons. Since the 1990s, electron microscopy studies, where a certain irradiation dose is unavoidable, have witnessed unexpected structural transformations of graphitic nanoparticles. It is recognized that electron irradiation is not only detrimental but also bears considerable potential in the formation of new graphitic structures. With the availability of aberration-corrected electron microscopes and the discovery of techniques to produce monolayers of graphene, detailed insight into the atomic processes occurring during electron irradiation became possible. Threshold energies for atom displacements are determined and models of different types of lattice vacancies are confirmed experimentally. However, experimental evidence for the configuration of interstitial atoms in graphite or adatoms on graphene remained indirect, and the understanding of defect dynamics still depends on theoretical concepts. This article reviews irradiation phenomena in graphene- or graphite-based nanomaterials from the scale of single atoms to tens of nanometers. Observations from the 1990s can now be explained on the basis of new results. The evolution of the understanding during three decades of research is presented, and the remaining problems are pointed out.

The Synthescope: A Vision for Combining Synthesis with Atomic Fabrication

The scanning transmission electron microscope, a workhorse instrument in materials characterization, is being transformed into an atomic-scale material-manipulation platform. With an eye on the trajectory of recent developments and the obstacles toward progress in this field, a vision for a path toward an expanded set of capabilities and applications is provided. The microscope is reconceptualized as an instrument for fabrication and synthesis with the capability to image and characterize atomic-scale structural formation as it occurs. Further development and refinement of this approach may have substantial impact on research in microelectronics, quantum information science, and catalysis, where precise control over atomic-scale structure and chemistry of a few "active sites" can have a dramatic impact on larger-scale functionality and where developing a better understanding of atomic-scale processes can help point the way to larger-scale synthesis approaches.

A Platform for Atomic Fabrication and In Situ Synthesis in a Scanning Transmission Electron Microscope

The engineering of quantum materials requires the development of tools able to address various synthesis and characterization challenges. These include the establishment and refinement of growth methods, material manipulation, and defect engineering. Atomic-scale modification will be a key enabling factor for engineering quantum materials where desired phenomena are critically determined by atomic structures. Successful use of scanning transmission electron microscopes (STEMs) for atomic scale material manipulation has opened the door for a transformed view of what can be accomplished using electron-beam-based strategies. However, serious obstacles exist on the pathway from possibility to practical reality. One such obstacle is the in situ delivery of atomized material in the STEM to the region of interest for further fabrication processes. Here, progress on this front is presented with a view toward performing synthesis (deposition and growth) processes in a scanning transmission electron microscope in combination with top-down control over the reaction region. An in situ thermal deposition platform is presented, tested, and deposition and growth processes are demonstrated. In particular, it is shown that isolated Sn atoms can be evaporated from a filament and caught on the nearby sample, demonstrating atomized material delivery. This platform is envisioned to facilitate real-time atomic resolution imaging of growth processes and open new pathways toward atomic fabrication.

Probing Electron Beam Induced Transformations on a Single-Defect Level via Automated Scanning Transmission Electron Microscopy

A robust approach for real-time analysis of the scanning transmission electron microscopy (STEM) data streams, based on ensemble learning and iterative training (ELIT) of deep convolutional neural networks, is implemented on an operational microscope, enabling the exploration of the dynamics of specific atomic configurations under electron beam irradiation via an automated experiment in STEM. Combined with beam control, this approach allows studying beam effects on selected atomic groups and chemical bonds in a fully automated mode. Here, we demonstrate atomically precise engineering of single vacancy lines in transition metal dichalcogenides and the creation and identification of topological defects in graphene. The ELIT-based approach facilitates direct on-the-fly analysis of the STEM data and engenders real-time feedback schemes for probing electron beam chemistry, atomic manipulation, and atom by atom assembly.

Dominant Role of Quantum Anharmonicity in the Stability and Optical Properties of Infinite Linear Acetylenic Carbon Chains

Carbyne, an infinite-length straight chain of carbon atoms, is supposed to undergo a second order phase transition from the metallic bond-symmetric cumulene (═C═C═)_∞ toward the distorted insulating polyyne chain (-C≡C-)_∞ displaying bond-length alternation. However, recent synthesis of ultra long carbon chains (∼6000 atoms, [Nat. Mater., 2016, 15, 634]) did not show any phase transition and detected only the polyyne phase, in agreement with previous experiments on capped finite carbon chains. Here, by performing first-principles calculations, we show that quantum-anharmonicity reduces the energy gain of the polyyne phase with respect to the cumulene one by 71%. The magnitude of the bond-length alternation increases by increasing temperature, in stark contrast with a second order phase transition, confining the cumulene-to-polyyne transition to extremely high and unphysical temperatures. Finally, we predict that a high temperature insulator-to-metal transition occurs in the polyyne phase confined in insulating nanotubes with sufficiently large dielectric constant due to a giant quantum-anharmonic bandgap renormalization.

Peculiar Atomic Bond Nature in Platinum Monatomic Chains

Metal atomic chains have been reported to change their electronic or magnetic properties by slight mechanical stimulus. However, the mechanical response has been veiled because of lack of information on the bond nature. Here, we clarify the bond nature in platinum (Pt) monatomic chains by our in situ transmission electron microscope method. The stiffness is measured with sub-N/m precision by quartz length-extension resonator. The bond stiffnesses at the middle of the chain and at the connection to the base are estimated to be 25 and 23 N/m, respectively, which are higher than the bulk counterpart. Interestingly, the bond length of 0.25 nm is found to be elastically stretched to 0.31 nm, corresponding to a 24% strain. Such peculiar bond nature could be explained by a novel concept of "string tension". This study is a milestone that will significantly change the way we think about atomic bonds in one-dimension.

Electron beam triggered single-atom dynamics in two-dimensional materials

Controlling atomic structure and dynamics with single-atom precision is the ultimate goal in nanoscience and nanotechnology. Despite great successes being achieved by scanning tunneling microscopy (STM) over the past a few decades, fundamental limitations, such as ultralow temperature, and low throughput, significantly hinder the fabrication of a large array of atomically defined structures by STM. The advent of aberration correction in scanning transmission electron microscopy (STEM) revolutionized the field of nanomaterials characterization pushing the detection limit down to single-atom sensitivity. The sub-angstrom focused electron beam (e-beam) of STEM is capable of interacting with an individual atom, thereby it is the ideal platform to direct and control matter at the level of a single atom or a small cluster. In this article, we discuss the transfer of energy and momentum from the incident e-beam to atoms and their subsequent potential dynamics under different e-beam conditions in 2D materials, particularly transition metal dichalcogenides (TMDs). Next, we systematically discuss the e-beam triggered structural evolutions of atomic defects, line defects, grain boundaries, and stacking faults in a few representative 2D materials. Their formation mechanisms, kinetic paths, and practical applications are comprehensively discussed. We show that desired structural evolution or atom-by-atom assembly can be precisely manipulated by e-beam irradiation which could introduce intriguing functionalities to 2D materials. In particular, we highlight the recent progress on controlling single Si atom migration in real-time on monolayer graphene along an extended path with high throughput in automated STEM. These results unprecedentedly demonstrate that single-atom dynamics can be realized by an atomically focused e-beam. With the burgeoning of artificial intelligence and big data, we can expect that fully automated microscopes with real-time data analysis and feedback could readily design and fabricate large scale nanostructures with unique functionalities in the near future.

Bond-Scission-Induced Structural Transformation from Cumulene to Diyne Moiety and Formation of Semiconducting Organometallic Polyyne

The structural transformation from symmetric cumulene to broken-symmetry polyyne within a one-dimensional (1-D) atomic carbon chain is a signature of Peierls distortion. Direct observation of such a structural transformation with single-bond resolution is, however, still challenging. Herein, we design a molecule with a cumulene moiety (Br₂C═C═C═CBr₂) and employ STM tip manipulation to achieve the molecular skeleton rearrangement from a cumulene to a diyne moiety (Br-C≡C-C≡C-Br). Furthermore, by an on-surface reaction strategy, thermally induced entire debromination (:C═C═C═C:) leads to the formation of a 1-D organometallic polyyne (-C≡C-C≡C-Au-) with a semiconducting characteristic, which implies that a Peierls-like transition may occur in a rationally designed molecular system with limited length.

Atomic Scale Imaging of Reversible Ring Cyclization in Graphene Nanoconstrictions

We present an atomic level study of reversible cyclization processes in suspended nanoconstricted regions of graphene that form linear carbon chains (LCCs). Before the nanoconstricted region reaches a single linear carbon chain (SLCC), we observe that a double linear carbon chain (DLCC) structure often reverts back to a ribbon of sp² hybridized oligoacene rings, in a process akin to the Bergman rearrangement. When the length of the DLCC system only consists of ∼5 atoms in each LCC, full recyclization occurs for all atoms present, but for longer DLCCs we find that only single sections of the chain are modified in their bonding hybridization and no full ring closure occurs along the entire DLCCs. This process is observed in real time using aberration-corrected transmission electron microscopy and simulated using density functional theory and tight binding molecular dynamics calculations. These results show that DLCCs are highly sensitive to the adsorption of local gas molecules or surface diffusion impurities and undergo structural modifications.

Defect Engineering in 2D Materials: Precise Manipulation and Improved Functionalities

Two-dimensional (2D) materials have attracted increasing interests in the last decade. The ultrathin feature of 2D materials makes them promising building blocks for next-generation electronic and optoelectronic devices. With reducing dimensionality from 3D to 2D, the inevitable defects will play more important roles in determining the properties of materials. In order to maximize the functionality of 2D materials, deep understanding and precise manipulation of the defects are indispensable. In the recent years, increasing research efforts have been made on the observation, understanding, manipulation, and control of defects in 2D materials. Here, we summarize the recent research progress of defect engineering on 2D materials. The defect engineering triggered by electron beam (e-beam), plasma, chemical treatment, and so forth is comprehensively reviewed. Firstly, e-beam irradiation-induced defect evolution, structural transformation, and novel structure fabrication are introduced. With the assistance of a high-resolution electron microscope, the dynamics of defect engineering can be visualized in situ. Subsequently, defect engineering employed to improve the performance of 2D devices by means of other methods of plasma, chemical, and ozone treatments is reviewed. At last, the challenges and opportunities of defect engineering on promoting the development of 2D materials are discussed. Through this review, we aim to build a correlation between defects and properties of 2D materials to support the design and optimization of high-performance electronic and optoelectronic devices.

Driving interference control by side carbon chains in molecular and two-dimensional nano-constrictions

Interference pattern modulation by side carbon chains is a general phenomenon, which is demonstrated in a benzene molecular device, a zigzag graphene nanoribbon device and a SiC nanoribbon device.

The Sub-Nanometer Scale as a New Focus in Nanoscience

Size is one of the central issues in nanoscience. The practical meaning of the term "sub-nanometric material (SNM)" requires two aspects: (1) its size should be at the atomic level; (2) it shows unique (size-related) properties compared to its nano-counterparts with larger sizes. Here, SNMs in the form of wires (SNWs) and the unique properties arising from their special size are reviewed. First, their polymer-like behavior, including rheological behavior and self-assembly, is dicussed. Their origins may stem from the special size and the ligands around the wire. Even a slight increase in diameter would risk the polymer-like behavior. Meanwhile, the ligands on SNWs are proportional to the inorganic entity at this scale. Consequently, surface ligands should have a profound impact on the properties, like catalysis, self-assembly, optics, etc. To reveal more potential applications, their applications in energy conversion are comprehensively reviewed. To some extent, characterization can greatly influence the way things are observed. Thus, some appropriate characterization techniques are briefly introduced. Finally, another emerging part of SNWs (atomic chain material) is briefly introduced. It is hoped that this review can provide new insights to this special scale.

A single-molecule porphyrin-based switch for graphene nano-gaps

Stable single-molecule switches with high on-off ratios are an essential component for future molecular-scale circuitry. Unfortunately, devices using gold electrodes are neither complementary metal-oxide-semiconductor (CMOS) compatible nor stable at room temperature. To overcome these limitations, several groups have been developing electroburnt graphene electrodes for single molecule electronics. Here, in anticipation of these developments, we examine how the electrical switching properties of a series of porphyrin molecules with pendant dipoles can be tuned by systematically increasing the number of spacer units between the porphyrin core and graphene electrodes. The porphyrin is sandwiched between a graphene source and drain and gated by a third electrode. It is found that the system has two stable states with high and low conductances, which can be controlled by coupling the dipole of the functionalised porphyrin to an external electric field. The associated rotation leads to the breaking of conjugation and a decrease in electrical conductances. As the number of spacers is increased, the conductance ratio can increase from 100 with one spacer to 200 with four spacers. This switching ratio is further enhanced by decreasing the temperature, reaching approximately 2200 at 100 K. This design for a molecular switch using graphene electrodes could be extended to other aromatic systems.

Robust Molecular Anchoring to Graphene Electrodes

Recent advances in the engineering of picoscale gaps between electroburnt graphene electrodes provide new opportunities for studying electron transport through electrostatically gated single molecules. But first we need to understand and develop strategies for anchoring single molecules to such electrodes. Here, for the first time we present a systematic theoretical study of transport properties using four different modes of anchoring zinc-porphyrin monomer, dimer, and trimer molecular wires to graphene electrodes. These involve either amine anchor groups, covalent C-C bonds to the edges of the graphene, or coupling via π-π stacking of planar polyaromatic hydrocarbons formed from pyrene or tetrabenzofluorene (TBF). π-π stacked pyrene anchors are particularly stable, which may be advantageous for forming robust single-molecule transistors. Despite their planar, multiatom coupling to the electrodes, pyrene anchors can exhibit both destructive interference and different degrees of constructive interference, depending on their connectivity to the porphyrin wire, which makes them attractive also for thermoelectricity. TBF anchors are more weakly coupled to both the graphene and the porphyrin wires and induce negative differential conductance at finite source-drain voltages. Furthermore, although direct C-C covalent bonding to the edges of graphene electrodes yields the highest electrical conductance, electron transport is significantly affected by the shape and size of the graphene electrodes because the local density of states at the carbon atoms connecting the electrode edges to the molecule is sensitive to the electrode surface shape. This sensitivity suggests that direct C-C bonding may be the most desirable for sensing applications. The ordering of the low-bias electrical conductances with different anchors is as follows: direct C-C coupling > π-π stacking with the pyrene anchors > direct coupling via amine anchors > π-π stacking with TBF anchors. Despite this dependency of conductances on the mode of anchoring, the decay of conductance with the length of the zinc-porphyrin wires is relatively insensitive with the associated attenuation factor β lying between 0.9 and 0.11 Å^-1.

Structural Distortions and Charge Density Waves in Iodine Chains Encapsulated inside Carbon Nanotubes

Atomic chains are perfect systems for getting fundamental insights into the electron dynamics and coupling between the electronic and ionic degrees of freedom in one-dimensional metals. Depending on the band filling, they can exhibit Peierls instabilities (or charge density waves), where equally spaced chain of atoms with partially filled band is inherently unstable, exhibiting spontaneous distortion of the lattice that further leads to metal-insulator transition in the system. Here, using high-resolution scanning transmission electron microscopy, we directly image the atomic structures of a chain of iodine atoms confined inside carbon nanotubes. In addition to long equidistant chains, the ones consisting of iodine dimers and trimers were also observed, as well as transitions between them. First-principles calculations reproduce the experimentally observed bond lengths and lattice constants, showing that the ionic movement is largely unconstrained in the longitudinal direction, while naturally confined by the nanotube in the lateral directions. Moreover, the trimerized chain bears the hallmarks of a charge density wave. The transition is driven by changes in the charge transfer between the chain and the nanotube and is enabled by the charge compensation and additional screening provided by the nanotube.