1
|
Ren Q, Osawa T, Tatsuno M, Obika S. THF peroxide as a factor in generating desulphurised products from the solid-phase synthesis of phosphorothioate-modified oligonucleotides. RSC Adv 2024; 14:21590-21596. [PMID: 38979452 PMCID: PMC11229082 DOI: 10.1039/d4ra03592e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Accepted: 07/01/2024] [Indexed: 07/10/2024] Open
Abstract
Antisense oligonucleotides (ASOs) are generally obtained via chemical synthesis on a solid support and phosphorothioate (PS) modification with a phosphate backbone to increase their in vivo stability and activity. However, desulphurised products, in which PS is partially replaced by phosphodiesters, are generally formed during the chemical synthesis of ASO and are difficult to separate from the desired PS-modified ASO by chromatography. Therefore, revealing the unknown factors that cause the formation of desulphurised products and proposing methods to inhibit their formation are highly desirable. In this study, it was found that peroxides in THF, which is used as a solvent for the acetyl capping agent, oxidise phosphite triesters to produce desulphurisation products. The use of THF with antioxidants effectively suppresses the oxidation caused by THF peroxides. Moreover, THF peroxide was found to oxidise phosphoramidites, which are the building blocks of oligonucleotide chemical syntheses, indicating that caution should be taken with the organic solvents used during the synthesis and purification of phosphoramidites.
Collapse
Affiliation(s)
- Qin Ren
- Graduate School of Pharmaceutical Sciences, Osaka University 1-6 Yamadaoka Suita Osaka 565-0871 Japan
| | - Takashi Osawa
- Graduate School of Pharmaceutical Sciences, Osaka University 1-6 Yamadaoka Suita Osaka 565-0871 Japan
| | - Michiaki Tatsuno
- Graduate School of Pharmaceutical Sciences, Osaka University 1-6 Yamadaoka Suita Osaka 565-0871 Japan
| | - Satoshi Obika
- Graduate School of Pharmaceutical Sciences, Osaka University 1-6 Yamadaoka Suita Osaka 565-0871 Japan
- Institute for Open and Transdisciplinary Research Initiatives, Osaka University 1-3 Yamadaoka Suita Osaka 565-0871 Japan
| |
Collapse
|
2
|
Rubel CZ, Cao Y, El-Hayek Ewing T, Laudadio G, Beutner GL, Wisniewski SR, Wu X, Baran PS, Vantourout JC, Engle KM. Electroreductive Synthesis of Nickel(0) Complexes. Angew Chem Int Ed Engl 2024; 63:e202311557. [PMID: 37984444 DOI: 10.1002/anie.202311557] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 11/09/2023] [Accepted: 11/17/2023] [Indexed: 11/22/2023]
Abstract
Over the last fifty years, the use of nickel catalysts for facilitating organic transformations has skyrocketed. Nickel(0) sources act as useful precatalysts because they can enter a catalytic cycle through ligand exchange, without needing to undergo additional elementary steps. However, most Ni(0) precatalysts are synthesized with stoichiometric aluminum-hydride reductants, pyrophoric reagents that are not atom-economical and must be used at cryogenic temperatures. Here, we demonstrate that Ni(II) salts can be reduced on preparative scale using electrolysis to yield a variety of Ni(0) and Ni(II) complexes that are widely used as precatalysts in organic synthesis, including bis(1,5-cyclooctadiene)nickel(0) [Ni(COD)2 ]. This method overcomes the reproducibility issues of previously reported methods by standardizing the procedure, such that it can be performed anywhere in a robust manner. It can be transitioned to large scale through an electrochemical recirculating flow process and extended to an in situ reduction protocol to generate catalytic amounts of Ni(0) for organic transformations. We anticipate that this work will accelerate adoption of preparative electrochemistry for the synthesis of low-valent organometallic complexes in academia and industry.
Collapse
Affiliation(s)
- Camille Z Rubel
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICMBS, UMR 5246 du CNRS), Université Lyon, Université Lyon 1, 1 rue Victor Grignard, 69100, Villeurbanne, France
| | - Yilin Cao
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
| | - Tamara El-Hayek Ewing
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
| | - Gabriele Laudadio
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
| | - Gregory L Beutner
- Chemical Process Development, Bristol Myers Squibb, 1 Squibb Drive, New Brunswick, NJ 08903, USA
| | - Steven R Wisniewski
- Chemical Process Development, Bristol Myers Squibb, 1 Squibb Drive, New Brunswick, NJ 08903, USA
| | - Xiangyu Wu
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853, USA
| | - Phil S Baran
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
| | - Julien C Vantourout
- Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICMBS, UMR 5246 du CNRS), Université Lyon, Université Lyon 1, 1 rue Victor Grignard, 69100, Villeurbanne, France
- Syngenta Crop Protection AG, Schaffauserstrasse, 4332, Stein, Switzerland
| | - Keary M Engle
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA 92037, USA
| |
Collapse
|
3
|
2D Nanomaterial—Based Electrocatalyst for Water Soluble Hydroperoxide Reduction. Catalysts 2022. [DOI: 10.3390/catal12080807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022] Open
Abstract
Hydroperoxides generated on lipid peroxidation are highly reactive compounds, tend to form free radicals, and their elevated levels indicate the deterioration of lipid samples. A good alternative to the classical methods for hydroperoxide monitoring are the electroanalytical methods (e.g., a catalytic electrode for their redox-transformation). For this purpose, a series of metal oxides—doped graphitic carbon nitride 2D nanomaterials—have been examined under mild conditions (pH = 7, room temperature) as catalysts for the electrochemical reduction of two water-soluble hydroperoxides: hydrogen peroxide and tert-butyl hydroperoxide. Composition of the electrode modifying phase has been optimized with respect to the catalyst load and binding polymer concentration. The resulting catalytic electrode has been characterized by impedance studies, cyclic voltammetry and chronoamperometry. Electrocatalytic effect of the Co-g-C3N4/Nafion modified electrode on the electrochemical reduction of both hydroperoxides has been proved by comparative studies. An optimal range of operating potentials from −0.215 V to −0.415 V (vs. RHE) was selected with the highest sensitivity achieved at −0.415 V (vs. RHE). At this operating potential, a linear dynamic range from 0.4 to 14 mM has been established by means of constant-potential chronoamperometry with a sensitivity, which is two orders of magnitude higher than that obtained with polymer-covered electrode.
Collapse
|
4
|
Cismesia MA, Vásquez Céspedes S. Reconsidering the Safety Hazards Associated with Peroxide Formation in 2-Propanol. Org Process Res Dev 2022. [DOI: 10.1021/acs.oprd.2c00112] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Megan A. Cismesia
- Small Molecule Discovery and Development, Corteva Agriscience, 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
| | - Suhelen Vásquez Céspedes
- Small Molecule Discovery and Development, Corteva Agriscience, 9330 Zionsville Road, Indianapolis, Indiana 46268, United States
| |
Collapse
|