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Batista PR, Ducati LC, Autschbach J. Dynamic and relativistic effects on Pt-Pt indirect spin-spin coupling in aqueous solution studied by ab initio molecular dynamics and two- vs four-component density functional NMR calculations. J Chem Phys 2024; 160:114307. [PMID: 38497474 DOI: 10.1063/5.0196853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 02/22/2024] [Indexed: 03/19/2024] Open
Abstract
Treating 195Pt nuclear magnetic resonance parameters in solution remains a considerable challenge from a quantum chemistry point of view, requiring a high level of theory that simultaneously takes into account the relativistic effects, the dynamic treatment of the solvent-solute system, and the dynamic electron correlation. A combination of Car-Parrinello molecular dynamics (CPMD) and relativistic calculations based on two-component zeroth order regular approximation spin-orbit Kohn-Sham (2c-ZKS) and four-component Dirac-Kohn-Sham (4c-DKS) Hamiltonians is performed to address the solvent effect (water) on the conformational changes and JPtPt1 coupling. A series of bridged PtIII dinuclear complexes [L1-Pt2(NH3)4(Am)2-L2]n+ (Am = α-pyrrolidonate and pivalamidate; L = H2O, Cl-, and Br-) are studied. The computed Pt-Pt coupling is strongly dependent on the conformational dynamics of the complexes, which, in turn, is correlated with the trans influence among axial ligands and with the angle N-C-O from the bridging ligands. The J-coupling is decomposed in terms of dynamic contributions. The decomposition reveals that the vibrational and explicit solvation contributions reduce JPtPt1 of diaquo complexes (L1 = L2 = H2O) in comparison to the static gas-phase magnitude, whereas the implicit solvation and bulk contributions correspond to an increase in JPtPt1 in dihalo (L1 = L2 = X-) and aquahalo (L1 = H2O; L2 = X-) complexes. Relativistic treatment combined with CPMD shows that the 2c-ZKS Hamiltonian performs as well as 4c-DKS for the JPtPt1 coupling.
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Affiliation(s)
- Patrick R Batista
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, 05508-000 São Paulo, SP, Brazil
| | - Lucas C Ducati
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, 05508-000 São Paulo, SP, Brazil
| | - Jochen Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260-3000, USA
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Shephard ACG, Daniels DP, Deacon GB, Guo Z, Jaroschik F, Junk PC. Selective carbon-phosphorus bond cleavage: expanding the toolbox for accessing bulky divalent lanthanoid sandwich complexes. Chem Commun (Camb) 2022; 58:4344-4347. [PMID: 35293913 DOI: 10.1039/d2cc00698g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthesis of two new tetra- and penta-phenycyclopentadienyldiphenylphosphine pro-ligands which readily undergo selective C-P bond cleavage has allowed for the facile synthesis of bulky divalent octa- and deca-phenylmetallocenes of europium, ytterbium and samarium.
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Affiliation(s)
- Angus C G Shephard
- College of Science & Engineering, James Cook University, Townsville, QLD, 4811, Australia.
| | - Daisy P Daniels
- School of Chemistry, Monash University, Clayton, VIC, 3800, Australia
| | - Glen B Deacon
- School of Chemistry, Monash University, Clayton, VIC, 3800, Australia
| | - Zhifang Guo
- College of Science & Engineering, James Cook University, Townsville, QLD, 4811, Australia.
| | | | - Peter C Junk
- College of Science & Engineering, James Cook University, Townsville, QLD, 4811, Australia.
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Predicting Pt-195 NMR Chemical Shift and 1J(195Pt-31P) Coupling Constant for Pt(0) Complexes Using the NMR-DKH Basis Sets. MAGNETOCHEMISTRY 2021. [DOI: 10.3390/magnetochemistry7110148] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Pt(0) complexes have been widely used as catalysts for important reactions, such as the hydrosilylation of olefins. In this context, nuclear magnetic resonance (NMR) spectroscopy plays an important role in characterising of new structures and elucidating reaction mechanisms. In particular, the Pt-195 NMR is fundamental, as it is very sensitive to the ligand type and the oxidation state of the metal. In the present study, quantum mechanics computational schemes are proposed for the theoretical prediction of the Pt-195 NMR chemical shift and 1J(195Pt–31P) in Pt(0) complexes. The protocols were constructed using the B3LYP/LANL2DZ/def2-SVP/IEF-PCM(UFF) level for geometry optimization and the GIAO-PBE/NMR-DKH/IEF-PCM(UFF) level for NMR calculation. The NMR fundamental quantities were then scaled by empirical procedures using linear correlations. For a set of 30 Pt(0) complexes, the results showed a mean absolute deviation (MAD) and mean relative deviation (MRD) of only 107 ppm and 2.3%, respectively, for the Pt-195 NMR chemical shift. When the coupling constant is taken into account, the MAD and MRD for a set of 33 coupling constants in 26 Pt(0) complexes were of 127 Hz and 3.3%, respectively. In addition, the models were validated for a group of 17 Pt(0) complexes not included in the original group that had MAD/MRD of 92 ppm/1.7% for the Pt-195 NMR chemical shift and 146 Hz/3.6% for the 1J(195Pt–31P).
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Usui R, Sunada Y. Triangular Palladium Cluster from Activation of the Si-Si Bond in a Disilane with Phosphine Pendants. Inorg Chem 2021; 60:15101-15105. [PMID: 34558907 DOI: 10.1021/acs.inorgchem.1c02043] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A disilane that contains two diphenylphosphino moieties, (Ph2PCH2)Ph2Si-SiPh2(CH2PPh), was readily synthesized from the reaction of ClPh2Si-SiPh2Cl with (tmeda)Li(CH2PPh2). Treatment of the thus-obtained disilane with the palladium(0) precursor [Pd(CNtBu)2]3 led to the exclusive formation of a trinuclear palladium cluster in which three palladium atoms are arranged in a triangular fashion. Single-crystal X-ray diffraction analysis of the obtained triangular cluster revealed that novel silylphosphido chelating ligands were formed via a skeletal rearrangement of the ligand framework.
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Affiliation(s)
| | - Yusuke Sunada
- JST PRESTO, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012 Japan
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Sabater S, Schmidt D, Schmidt H(S, Kuntze‐Fechner MW, Zell T, Isaac CJ, Rajabi NA, Grieve H, Blackaby WJM, Lowe JP, Macgregor SA, Mahon MF, Radius U, Whittlesey MK. [Ni(NHC) 2 ] as a Scaffold for Structurally Characterized trans [H-Ni-PR 2 ] and trans [R 2 P-Ni-PR 2 ] Complexes. Chemistry 2021; 27:13221-13234. [PMID: 34190374 PMCID: PMC8518396 DOI: 10.1002/chem.202101484] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Indexed: 11/06/2022]
Abstract
The addition of PPh2 H, PPhMeH, PPhH2 , P(para-Tol)H2 , PMesH2 and PH3 to the two-coordinate Ni0 N-heterocyclic carbene species [Ni(NHC)2 ] (NHC=IiPr2 , IMe4 , IEt2 Me2 ) affords a series of mononuclear, terminal phosphido nickel complexes. Structural characterisation of nine of these compounds shows that they have unusual trans [H-Ni-PR2 ] or novel trans [R2 P-Ni-PR2 ] geometries. The bis-phosphido complexes are more accessible when smaller NHCs (IMe4 >IEt2 Me2 >IiPr2 ) and phosphines are employed. P-P activation of the diphosphines R2 P-PR2 (R2 =Ph2 , PhMe) provides an alternative route to some of the [Ni(NHC)2 (PR2 )2 ] complexes. DFT calculations capture these trends with P-H bond activation proceeding from unconventional phosphine adducts in which the H substituent bridges the Ni-P bond. P-P bond activation from [Ni(NHC)2 (Ph2 P-PPh2 )] adducts proceeds with computed barriers below 10 kcal mol-1 . The ability of the [Ni(NHC)2 ] moiety to afford isolable terminal phosphido products reflects the stability of the Ni-NHC bond that prevents ligand dissociation and onward reaction.
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Affiliation(s)
- Sara Sabater
- Department of ChemistryUniversity of Bath Claverton DownBathBA2 7AYUK
| | - David Schmidt
- Institut für Anorganische ChemieJulius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | | | | | - Thomas Zell
- Institut für Anorganische ChemieJulius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
| | - Connie J. Isaac
- Department of ChemistryUniversity of Bath Claverton DownBathBA2 7AYUK
| | - Nasir A. Rajabi
- Institute of Chemical SciencesHeriot-Watt UniversityEdinburghEH14 4ASUK
| | - Harry Grieve
- Department of ChemistryUniversity of Bath Claverton DownBathBA2 7AYUK
| | | | - John P. Lowe
- Department of ChemistryUniversity of Bath Claverton DownBathBA2 7AYUK
| | | | - Mary F. Mahon
- Department of ChemistryUniversity of Bath Claverton DownBathBA2 7AYUK
| | - Udo Radius
- Institut für Anorganische ChemieJulius-Maximilians-Universität WürzburgAm Hubland97074WürzburgGermany
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Mild intramolecular P–C(sp3) bond cleavage in bridging diphosphine complexes of RuII RhIII and IrIII. J Organomet Chem 2021. [DOI: 10.1016/j.jorganchem.2021.121704] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Berkefeld A, Roemelt M, Römelt C, Schubert H, Jeschke G. Modulating Effect of Ligand Charge on the Electronic Properties of 2Ni-2S Structures and Implications for Biological 2M-2S Sites. Inorg Chem 2020; 59:17234-17243. [PMID: 33202137 DOI: 10.1021/acs.inorgchem.0c02467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Sulfur-bridged bimetallic 2M-2S type structures are essential cofactors that participate in biological long-range electron transport and metabolism. Metal-sulfur bond covalency is a decisive property for inner sphere (through-bond) type electron transfer that dominates in buried or hydrophobic protein environments. This work reports on a combined experimental and computational study of the effect of ligand charge on the electronic structure of a 2Ni-2S model site that adopts the biologically relevant S = 1/2 redox state. Starting out from an isostructural dinickel(1.5+)-dithiophenolate platform with sulfur-bridged tetrahedral Ni sites, η2:η2-μ-coordination of the S = 1/2 [2Ni-2S]+ core to either a neutral π-system or strongly σ-donating cyclohexadienido renders its electronic structure substantially different. Density functional theory analysis corroborates pulse and continuous wave electron paramagnetic resonance data that associate co-ligand charge with the significant change in the mechanism and size of electron-31P nuclear spin hyperfine coupling to a phosphine reporter ligand at each nickel center. An increasing level of charge donation attenuates direct and through-bridge electronic coupling of the metal sites, resulting in a stronger electronic coupling of the 2Ni-2S core to its terminal phosphine donors. Drawing a connection to biological 2M-2S sites, our 2Ni-2S system indicates that a fine balance of intracore and core-protein electronic coupling is key to biological function for which the degree of charge donation by peripheral donors appears to be a significant parameter.
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Affiliation(s)
- Andreas Berkefeld
- Institut für Anorganische Chemie, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 18, 72076 Tübingen, Germany
| | - Michael Roemelt
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, 44780 Bochum, Germany
| | - Christina Römelt
- Max-Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Hartmut Schubert
- Institut für Anorganische Chemie, Eberhard Karls Universität Tübingen, Auf der Morgenstelle 18, 72076 Tübingen, Germany
| | - Gunnar Jeschke
- Department of Chemistry and Applied Biosciences, Laboratory of Physical Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, 8093 Zurich, Switzerland
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