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Saha J, Banerjee S, Malo S, Das AK, Das I. A Torquoselective Thermal 6π-Electrocyclization Approach to 1,4-Cyclohexadienes via Solvent-Aided Proton Transfer: Experimental and Theoretical Studies. Chemistry 2024; 30:e202304009. [PMID: 38179806 DOI: 10.1002/chem.202304009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 12/26/2023] [Accepted: 01/05/2024] [Indexed: 01/06/2024]
Abstract
The thermal 6π-electrocyclization of hexatriene typically delivers 1,3-cyclohexadiene (1,3-CHD). However, there is only limited success in directly synthesizing 1,4-cyclohexadiene (1,4-CHD) using such an approach, probably due to the difficulty in realizing thermally-forbidden 1,3-hydride shift after electrocyclic ring closure. The present study shows that by heating (2E,4E,6E)-hexatrienes bearing ester or ketone substituents at the C1-position in a mixture of toluene/MeOH or EtOH (2 : 1) solvents at 90-100 °C, 1,4-CHDs can be selectively synthesized. This is achieved through a torquoselective disrotatory 6π-electrocyclic ring closure followed by a proton-transfer process. The success of this method depends on the polar protic solvent-assisted intramolecular proton transfer from 1,3-CHD to 1,4-CHD, which has been confirmed by deuterium-labeling experiments. There are no reports to date for such a solvent-assisted isomerization. Density functional theory (DFT) studies have suggested that forming 1,3-CHD and subsequent isomerization is a thermodynamically feasible process, regardless of the functional groups involved. Two possible successive polar solvent-assisted proton-transfer pathways have been identified for isomerization.
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Affiliation(s)
- Jayanta Saha
- Organic and Medicinal Chemistry Division, CSIR-Indian Institute of Chemical BiologyJadavpur, Kolkata, 700032, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Soumadip Banerjee
- School of Mathematical and Computational Sciences, Indian Association for the Cultivation of Science Jadavpur, Kolkata, 700032, India
| | - Sidhartha Malo
- Organic and Medicinal Chemistry Division, CSIR-Indian Institute of Chemical BiologyJadavpur, Kolkata, 700032, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Abhijit Kumar Das
- School of Mathematical and Computational Sciences, Indian Association for the Cultivation of Science Jadavpur, Kolkata, 700032, India
| | - Indrajit Das
- Organic and Medicinal Chemistry Division, CSIR-Indian Institute of Chemical BiologyJadavpur, Kolkata, 700032, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
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Prasad VK, Pei Z, Edelmann S, Otero-de-la-Roza A, DiLabio GA. BH9, a New Comprehensive Benchmark Data Set for Barrier Heights and Reaction Energies: Assessment of Density Functional Approximations and Basis Set Incompleteness Potentials. J Chem Theory Comput 2021; 18:151-166. [PMID: 34911294 DOI: 10.1021/acs.jctc.1c00694] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The calculation of accurate reaction energies and barrier heights is essential in computational studies of reaction mechanisms and thermochemistry. To assess methods regarding their ability to predict these two properties, high-quality benchmark sets are required that comprise a reasonably large and diverse set of organic reactions. Due to the time-consuming nature of both locating transition states and computing accurate reference energies for reactions involving large molecules, previous benchmark sets have been limited in scope, the number of reactions considered, and the size of the reactant and product molecules. Recent advances in coupled-cluster theory, in particular local correlation methods like DLPNO-CCSD(T), now allow the calculation of reaction energies and barrier heights for relatively large systems. In this work, we present a comprehensive and diverse benchmark set of barrier heights and reaction energies based on DLPNO-CCSD(T)/CBS called BH9. BH9 comprises 449 chemical reactions belonging to nine types common in organic chemistry and biochemistry. We examine the accuracy of DLPNO-CCSD(T) vis-a-vis canonical CCSD(T) for a subset of BH9 and conclude that, although there is a penalty in using the DLPNO approximation, the reference data are accurate enough to serve as a benchmark for density functional theory (DFT) methods. We then present two applications of the BH9 set. First, we examine the performance of several density functional approximations commonly used in thermochemical and mechanistic studies. Second, we assess our basis set incompleteness potentials regarding their ability to mitigate basis set incompleteness errors. The number of data points, the diversity of the reactions considered, and the relatively large size of the reactant molecules make BH9 the most comprehensive thermochemical benchmark set to date and a useful tool for the development and assessment of computational methods.
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Affiliation(s)
- Viki Kumar Prasad
- Department of Chemistry, University of British Columbia, 3247 University Way, Kelowna, British Columbia, Canada V1V 1V7
| | - Zhipeng Pei
- Department of Chemistry, University of British Columbia, 3247 University Way, Kelowna, British Columbia, Canada V1V 1V7
| | - Simon Edelmann
- Department of Chemistry, University of British Columbia, 3247 University Way, Kelowna, British Columbia, Canada V1V 1V7
| | - Alberto Otero-de-la-Roza
- Departamento de Química Física y Analítica and MALTA Consolider Team, Facultad de Química, Universidad de Oviedo, 33006 Oviedo, Spain
| | - Gino A DiLabio
- Department of Chemistry, University of British Columbia, 3247 University Way, Kelowna, British Columbia, Canada V1V 1V7
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3
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Elgindy C, Ward JS, Sherburn MS. Tetravinylallene. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201908496] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Cecile Elgindy
- Research School of Chemistry Australian National University Canberra ACT 2601 Australia
| | - Jas S. Ward
- Research School of Chemistry Australian National University Canberra ACT 2601 Australia
| | - Michael S. Sherburn
- Research School of Chemistry Australian National University Canberra ACT 2601 Australia
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Abstract
The first chemical synthesis of tetravinylallene (3,5-divinylhepta-1,3,4,6-tetraene) is reported. The final, key step of the synthesis involves a palladium-catalyzed, Negishi-type cross-coupling involving 1,5-transposition of a penta-2-en-4-yn-1-ol methanesulfonate. The unprecedented fundamental hydrocarbon is sufficiently stable to be purified by flash chromatography. A similar synthetic pathway grants access to the first substituted tetravinylallenes, which provide insights into the influence of substitution upon stability and reactivity. Tetravinylallenes are shown to break new ground in swift structural complexity creation, with three novel sequences reported.
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Affiliation(s)
- Cecile Elgindy
- Research School of Chemistry, Australian National University, Canberra, ACT, 2601, Australia
| | - Jas S Ward
- Research School of Chemistry, Australian National University, Canberra, ACT, 2601, Australia
| | - Michael S Sherburn
- Research School of Chemistry, Australian National University, Canberra, ACT, 2601, Australia
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Vargas DF, Larghi EL, Kaufman TS. The 6π-azaelectrocyclization of azatrienes. Synthetic applications in natural products, bioactive heterocycles, and related fields. Nat Prod Rep 2019; 36:354-401. [PMID: 30090891 DOI: 10.1039/c8np00014j] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Covering: 2006 to 2018 The application of the 6π-azaelectrocyclization of azatrienes as a key strategy for the synthesis of natural products, their analogs and related bioactive or biomedically-relevant compounds (from 2006 to date) is comprehensively reviewed. Details about reaction optimization studies, relevant reaction mechanisms and conditions are also discussed.
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Affiliation(s)
- Didier F Vargas
- Instituto de Química Rosario (IQUIR, CONICET-UNR), Facultad de Ciencias Bioquímicas y Farmacéuticas - Universidad Nacional de Rosario, Suipacha 531, 2000 Rosario, Argentina.
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Wan Y, Zheng X, Ma C. Conjugated Dienyne-Imides as Robust Precursors of 1-Azatrienes for 6π Electrocyclizations to Furo[2,3-b
]dihydropyridine Cores. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201800303] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Yanjun Wan
- Department of Chemistry; Zhejiang University; Hangzhou 310027 China
| | - Xuchun Zheng
- Department of Chemistry; Zhejiang University; Hangzhou 310027 China
| | - Cheng Ma
- Department of Chemistry; Zhejiang University; Hangzhou 310027 China
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Wan Y, Zheng X, Ma C. Conjugated Dienyne-Imides as Robust Precursors of 1-Azatrienes for 6π Electrocyclizations to Furo[2,3-b
]dihydropyridine Cores. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/anie.201800303] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Yanjun Wan
- Department of Chemistry; Zhejiang University; Hangzhou 310027 China
| | - Xuchun Zheng
- Department of Chemistry; Zhejiang University; Hangzhou 310027 China
| | - Cheng Ma
- Department of Chemistry; Zhejiang University; Hangzhou 310027 China
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Qi C, Xiong Y, Eschenbrenner-Lux V, Cong H, Porco JA. Asymmetric Syntheses of the Flavonoid Diels-Alder Natural Products Sanggenons C and O. J Am Chem Soc 2016; 138:798-801. [PMID: 26735066 PMCID: PMC4863937 DOI: 10.1021/jacs.5b12778] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Metal-catalyzed, double Claisen rearrangement of a bis-allyloxyflavone has been utilized to enable a concise synthesis of the hydrobenzofuro[3,2-b]chromenone core structure of the natural products sanggenon A and sanggenol F. In addition, catalytic, enantioselective [4+2] cycloadditions of 2'-hydroxychalcones have been accomplished using B(OPh)3/BINOL complexes. Asymmetric syntheses of the flavonoid Diels-Alder natural products sanggenons C and O have been achieved employing a stereodivergent reaction of a racemic mixture (stereodivergent RRM) involving [4+2] cycloaddition.
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Affiliation(s)
| | | | - Vincent Eschenbrenner-Lux
- Department of Chemistry and Center for Molecular Discovery (BU-CMD), Boston University, Boston, Massachusetts 02215, United States
| | - Huan Cong
- Department of Chemistry and Center for Molecular Discovery (BU-CMD), Boston University, Boston, Massachusetts 02215, United States
| | - John A. Porco
- Department of Chemistry and Center for Molecular Discovery (BU-CMD), Boston University, Boston, Massachusetts 02215, United States
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Patel A, Vella JR, Ma ZX, Hsung RP, Houk KN. Transition State Gauche Effects Control the Torquoselectivities of the Electrocyclizations of Chiral 1-Azatrienes. J Org Chem 2015; 80:11888-94. [PMID: 26435446 PMCID: PMC5555587 DOI: 10.1021/acs.joc.5b02085] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Hsung et al. have reported a series of torquoselective electrocyclizations of chiral 1-azahexa-1E,3Z,5E-trienes that yield functionalized dihydropyridines. To understand the origins of the torquoselectivities of these azaelectrocyclizations, we modeled these electrocyclic ring closures using the M06-2X density functional. A new stereochemical model that rationalizes the observed 1,2 stereoinduction emerges from these computations. This model is an improvement and generalization of the "inside-alkoxy" model used to rationalize stereoselectivities of the 1,3-dipolar cycloaddition of chiral allyl ethers and emphasizes a stabilizing hyperconjugative effect, which we have termed a transition state gauche effect. This stereoelectronic effect controls the conformational preferences at the electrocyclization transition states, and only in one of the allowed disrotatory electrocyclization transition states is the ideal stereoelectronic arrangement achieved without the introduction of a steric clash. Computational experiments confirm the role of this effect as a stereodeterminant since substrates with electropositive groups and electronegative groups have different conformational preferences at the transition state and undergo ring closure with divergent stereochemical outcomes. This predicted reversal of stereoselectivity for the ring closures of several silyl substituted azatrienes have been demonstrated experimentally.
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Affiliation(s)
| | | | - Zhi-Xiong Ma
- Division of Pharmaceutical Sciences, School of Pharmacy, and Department of Chemistry, University of Wisconsin , Madison, Wisconsin 53705, United States
| | - R P Hsung
- Division of Pharmaceutical Sciences, School of Pharmacy, and Department of Chemistry, University of Wisconsin , Madison, Wisconsin 53705, United States
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Phillips EM, Mesganaw T, Patel A, Duttwyler S, Mercado BQ, Houk KN, Ellman JA. Synthesis of ent-ketorfanol via a C-H alkenylation/torquoselective 6π electrocyclization cascade. Angew Chem Int Ed Engl 2015; 54:12044-8. [PMID: 26385263 DOI: 10.1002/anie.201505604] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2015] [Indexed: 11/07/2022]
Abstract
The asymmetric synthesis of ent-ketorfanol from simple and commercially available precursors is reported. A Rh(I) -catalyzed intramolecular CH alkenylation/torquoselective 6π electrocyclization cascade provides a fused bicyclic 1,2-dihydropyridine as a key intermediate. Computational studies were performed to understand the high torquoselectivity of the key 6π electrocyclization. The computational results demonstrate that a conformational effect is responsible for the observed selectivity. The ketone functionality and final ring are introduced in a single step by a redox-neutral acid-catalyzed rearrangement of a vicinal diol to give the requisite carbonyl, followed by intramolecular Friedel-Crafts alkylation.
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Affiliation(s)
- Eric M Phillips
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, CT 06520 (USA)
| | - Tehetena Mesganaw
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, CT 06520 (USA)
| | - Ashay Patel
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA 90095-1569 (USA)
| | - Simon Duttwyler
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, CT 06520 (USA)
| | - Brandon Q Mercado
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, CT 06520 (USA)
| | - Kendall N Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, CA 90095-1569 (USA).
| | - Jonathan A Ellman
- Department of Chemistry, Yale University, 225 Prospect St., New Haven, CT 06520 (USA).
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11
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Phillips EM, Mesganaw T, Patel A, Duttwyler S, Mercado BQ, Houk KN, Ellman JA. Synthesis ofent-Ketorfanol via a C-H Alkenylation/Torquoselective 6π Electrocyclization Cascade. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201505604] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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