1
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Li J, Chandgude AL, Zheng Q, Dömling A. Innovative synthesis of drug-like molecules using tetrazole as core building blocks. Beilstein J Org Chem 2024; 20:950-958. [PMID: 38711589 PMCID: PMC11070966 DOI: 10.3762/bjoc.20.85] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Accepted: 04/12/2024] [Indexed: 05/08/2024] Open
Abstract
Tetrazole is widely utilized as a bioisostere for carboxylic acid in the field of medicinal chemistry and drug development, enhancing the drug-like characteristics of various molecules. Typically, tetrazoles are introduced from their nitrile precursors through late-stage functionalization. In this work, we propose a novel strategy involving the use of diversely protected, unprecedented tetrazole aldehydes as building blocks. This approach facilitates the incorporation of the tetrazole group into multicomponent reactions or other chemistries, aiding in the creation of a variety of complex, drug-like molecules. These innovative tetrazole building blocks are efficiently and directly synthesized using a Passerini three-component reaction (PT-3CR), employing cost-effective and readily available materials. We further showcase the versatility of these new tetrazole building blocks by integrating the tetrazole moiety into various multicomponent reactions (MCRs), which are already significantly employed in drug discovery. This technique represents a unique and complementary method to existing tetrazole synthesis processes. It aims to meet the growing demand for tetrazole-based compound libraries and novel scaffolds, which are challenging to synthesize through other methods.
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Affiliation(s)
- Jingyao Li
- Department of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Ajay L Chandgude
- Department of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Qiang Zheng
- Department of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Alexander Dömling
- Department of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
- Institute of Molecular and Translational Medicine, Faculty of Medicine and Dentistry and Czech Advanced Technology and Research Institute, Palackӯ University in Olomouc, Olomouc, Czech Republic
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2
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Singh M, Vaishali, Jamra R, Deepika, Kumar S, Singh V. Iodine‐Catalysed Synthesis of β‐Carboline Tethered α‐Amino Amidines Through Ugi‐Type Multicomponent Reaction. ChemistrySelect 2022. [DOI: 10.1002/slct.202202392] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Manpreet Singh
- Department of Chemistry Baba Farid Group of Institutions Bathinda Punjab 151001 India
| | - Vaishali
- Department of Chemistry Dr B. R. Ambedkar National Institute of Technology (NIT) Jalandhar Punjab India 144011
| | - Rahul Jamra
- Department of Chemistry Dr B. R. Ambedkar National Institute of Technology (NIT) Jalandhar Punjab India 144011
- Department of Chemistry Central University of Punjab Bathinda Punjab India 151401
| | - Deepika
- Department of Chemistry Dr B. R. Ambedkar National Institute of Technology (NIT) Jalandhar Punjab India 144011
| | - Sunit Kumar
- Department of Chemistry Dr B. R. Ambedkar National Institute of Technology (NIT) Jalandhar Punjab India 144011
| | - Virender Singh
- Department of Chemistry Dr B. R. Ambedkar National Institute of Technology (NIT) Jalandhar Punjab India 144011
- Department of Chemistry Central University of Punjab Bathinda Punjab India 151401
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3
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A Versatile Class of 1,4,4-Trisubstituted Piperidines Block Coronavirus Replication In Vitro. Pharmaceuticals (Basel) 2022; 15:ph15081021. [PMID: 36015168 PMCID: PMC9416004 DOI: 10.3390/ph15081021] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 08/15/2022] [Accepted: 08/16/2022] [Indexed: 12/03/2022] Open
Abstract
There is a clear need for novel antiviral concepts to control SARS-CoV-2 infection. Based on the promising anti-coronavirus activity observed for a class of 1,4,4-trisubstituted piperidines, we here conducted a detailed analysis of the structure–activity relationship of these structurally unique inhibitors. Despite the presence of five points of diversity, the synthesis of an extensive series of analogues was readily achieved by Ugi four-component reaction from commercially available reagents. After evaluating 63 analogues against human coronavirus 229E, four of the best molecules were selected and shown to have micromolar activity against SARS-CoV-2. Since the action point was situated post virus entry and lying at the stage of viral polyprotein processing and the start of RNA synthesis, enzymatic assays were performed with CoV proteins involved in these processes. While no inhibition was observed for SARS-CoV-2 nsp12-nsp7-nsp8 polymerase, nsp14 N7-methyltransferase and nsp16/nsp10 2’-O-methyltransferase, nor the nsp3 papain-like protease, the compounds clearly inhibited the nsp5 main protease (Mpro). Although the inhibitory activity was quite modest, the plausibility of binding to the catalytic site of Mpro was established by in silico studies. Therefore, the 1,4,4-trisubstituted piperidines appear to represent a novel class of non-covalent CoV Mpro inhibitors that warrants further optimization and development.
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4
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Abdelraheem E, Lubberink M, Wang W, Li J, Reyes Romero A, van der Straat R, Du X, Groves M, Dömling A. Multicomponent Macrocyclic IL-17a Modifier. ACS Med Chem Lett 2022; 13:1468-1471. [PMID: 36105327 PMCID: PMC9465830 DOI: 10.1021/acsmedchemlett.2c00257] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Accepted: 08/10/2022] [Indexed: 11/28/2022] Open
Abstract
![]()
IL-17a is a major inflammation target, with several approved
antibodies
in clinical use. Small-molecule IL-17a antagonists are an emerging
hot topic, with the recent advancement of three compounds into clinical
trials. Here, we describe the design, discovery, synthesis, and screening
of macrocyclic compounds that bind to IL-17a. We found that all currently
described IL-17a modifiers belong to the same pharmacophore model,
likely resulting in a similar receptor binding mode on IL-17a. A pipeline
of pharmacophore analysis, virtual screening, resynthesis, and protein
biophysics resulted in a potent IL-17a macrocyclic modifier.
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Affiliation(s)
- Eman Abdelraheem
- Department of Pharmacy, Drug Design Group, University of Groningen, A. Deusinglaan 1, Groningen 9700 AV, The Netherlands
- Chemistry Department, Faculty of Science, Sohag University, Sohag 82524, Egypt
| | - Max Lubberink
- Department of Pharmacy, Drug Design Group, University of Groningen, A. Deusinglaan 1, Groningen 9700 AV, The Netherlands
| | - Wenja Wang
- Department of Pharmacy, Drug Design Group, University of Groningen, A. Deusinglaan 1, Groningen 9700 AV, The Netherlands
| | - Jingyao Li
- Department of Pharmacy, Drug Design Group, University of Groningen, A. Deusinglaan 1, Groningen 9700 AV, The Netherlands
| | - Atilio Reyes Romero
- Department of Pharmacy, Drug Design Group, University of Groningen, A. Deusinglaan 1, Groningen 9700 AV, The Netherlands
| | - Robin van der Straat
- Department of Pharmacy, Drug Design Group, University of Groningen, A. Deusinglaan 1, Groningen 9700 AV, The Netherlands
| | - Xiaochen Du
- Department of Pharmacy, Drug Design Group, University of Groningen, A. Deusinglaan 1, Groningen 9700 AV, The Netherlands
| | - Matthew Groves
- Department of Pharmacy, Drug Design Group, University of Groningen, A. Deusinglaan 1, Groningen 9700 AV, The Netherlands
| | - Alexander Dömling
- Department of Pharmacy, Drug Design Group, University of Groningen, A. Deusinglaan 1, Groningen 9700 AV, The Netherlands
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5
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Nikoofar K, Yielzoleh FM. High-component reactions (HCRs): An overview of MCRs containing seven or more components as versatile tools in organic synthesis. Curr Org Synth 2021; 19:115-147. [PMID: 34515008 DOI: 10.2174/1570179418666210910111208] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 06/28/2021] [Accepted: 07/07/2021] [Indexed: 11/22/2022]
Abstract
Recently, multi-component reactions (MCRs) have gained special attention due to their versatility for the synthesis of polycyclic heterocycles. Moreover, their applicability can become more widespread as they can be combined together as a union of MCRs. In this overview, the authors have tried to collect the MCRs containing more than seven components that can lead to effectual heterocycles in organic and/or pharmaceutical chemistry. The review contains papers published up to the end of 2020. The subject is classified based on the number of substrates, such as seven-, eight-, nine-, ten-, and more components. The authors expect their report to be helpful for researchers to clarify their route to significant MCRs.
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Affiliation(s)
- Kobra Nikoofar
- Department of Chemistry, Faculty of Physics and Chemistry, Alzahra University, Tehran. Iran
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6
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Kharchenko SH, Iampolska AD, Radchenko DS, Vashchenko BV, Voitenko ZV, Grygorenko OO. A Diversity‐Oriented Approach to Large Libraries of Artificial Macrocycles. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100195] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
| | - Anna D. Iampolska
- Enamine Ltd. Chervonotkatska Street 78 Kyiv 02094 Ukraine
- Taras Shevchenko National University of Kyiv Volodymyrska Street 60 Kyiv 01601 Ukraine
| | - Dmytro S. Radchenko
- Enamine Ltd. Chervonotkatska Street 78 Kyiv 02094 Ukraine
- Taras Shevchenko National University of Kyiv Volodymyrska Street 60 Kyiv 01601 Ukraine
| | - Bohdan V. Vashchenko
- Enamine Ltd. Chervonotkatska Street 78 Kyiv 02094 Ukraine
- Taras Shevchenko National University of Kyiv Volodymyrska Street 60 Kyiv 01601 Ukraine
| | - Zoia V. Voitenko
- Taras Shevchenko National University of Kyiv Volodymyrska Street 60 Kyiv 01601 Ukraine
| | - Oleksandr O. Grygorenko
- Enamine Ltd. Chervonotkatska Street 78 Kyiv 02094 Ukraine
- Taras Shevchenko National University of Kyiv Volodymyrska Street 60 Kyiv 01601 Ukraine
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7
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Flores-Reyes JC, Islas-Jácome A, González-Zamora E. The Ugi three-component reaction and its variants. Org Chem Front 2021. [DOI: 10.1039/d1qo00313e] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A broad variety of α-aminoamide-based compounds have been synthesized via the three-component version of the Ugi reaction (U-3CR) or by any of its variants (Ugi-Zhu-3CR, Orru-3CR, Ugi-4C-3CR, Ugi-Joullié-3CR, GBB-3CR, Ugi-Reissert-3CR, and so on).
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Affiliation(s)
- Julio César Flores-Reyes
- Departamento de Química, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, C.P. 09340, Ciudad de Mexico
| | - Alejandro Islas-Jácome
- Departamento de Química, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, C.P. 09340, Ciudad de Mexico
| | - Eduardo González-Zamora
- Departamento de Química, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, C.P. 09340, Ciudad de Mexico
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8
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Reyes Romero A, Ruiz-Moreno AJ, Groves MR, Velasco-Velázquez M, Dömling A. Benchmark of Generic Shapes for Macrocycles. J Chem Inf Model 2020; 60:6298-6313. [PMID: 33270455 PMCID: PMC7768607 DOI: 10.1021/acs.jcim.0c01038] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
![]()
Macrocycles
target proteins that are otherwise considered undruggable
because of a lack of hydrophobic cavities and the presence of extended
featureless surfaces. Increasing efforts by computational chemists
have developed effective software to overcome the restrictions of
torsional and conformational freedom that arise as a consequence of
macrocyclization. Moloc is an efficient algorithm, with an emphasis
on high interactivity, and has been constantly updated since 1986
by drug designers and crystallographers of the Roche biostructural
community. In this work, we have benchmarked the shape-guided algorithm
using a dataset of 208 macrocycles, carefully selected on the basis
of structural complexity. We have quantified the accuracy, diversity,
speed, exhaustiveness, and sampling efficiency in an automated fashion
and we compared them with four commercial (Prime, MacroModel, molecular
operating environment, and molecular dynamics) and four open-access
(experimental-torsion distance geometry with additional “basic
knowledge” alone and with Merck molecular force field minimization
or universal force field minimization, Cambridge Crystallographic
Data Centre conformer generator, and conformator) packages. With three-quarters
of the database processed below the threshold of high ring accuracy,
Moloc was identified as having the highest sampling efficiency and
exhaustiveness without producing thousands of conformations, random
ring splitting into two half-loops, and possibility to interactively
produce globular or flat conformations with diversity similar to Prime,
MacroModel, and molecular dynamics. The algorithm and the Python scripts
for full automatization of these parameters are freely available for
academic use.
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Affiliation(s)
- Atilio Reyes Romero
- Drug Design, Department of Pharmacy, University of Groningen, Antonius Deusinglaan 1, XB20, 9713 AV Groningen, The Netherlands
| | - Angel Jonathan Ruiz-Moreno
- Drug Design, Department of Pharmacy, University of Groningen, Antonius Deusinglaan 1, XB20, 9713 AV Groningen, The Netherlands.,Departamento de Farmacología y Unidad Periférica de Investigación en Biomedicina Trasnacional, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Av. Universidad 3000, Circuito Exterior S/N, Delegación Coyoacán, Ciudad Universitaria, 04510 Ciudad de México, Mexico.,Programa de Doctorado en Ciencias Biomédicas, UNAM, Av. Universidad 3000, Circuito Exterior S/N. Delegación Coyoacán, Ciudad Universitaria, 04510 Ciudad de México, Mexico
| | - Matthew R Groves
- Drug Design, Department of Pharmacy, University of Groningen, Antonius Deusinglaan 1, XB20, 9713 AV Groningen, The Netherlands
| | - Marco Velasco-Velázquez
- Departamento de Farmacología y Unidad Periférica de Investigación en Biomedicina Trasnacional, Facultad de Medicina, Universidad Nacional Autónoma de México (UNAM), Av. Universidad 3000, Circuito Exterior S/N, Delegación Coyoacán, Ciudad Universitaria, 04510 Ciudad de México, Mexico
| | - Alexander Dömling
- Drug Design, Department of Pharmacy, University of Groningen, Antonius Deusinglaan 1, XB20, 9713 AV Groningen, The Netherlands
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9
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Song G, Qu C, Lei J, Yan W, Tang D, Li H, Chen Z, Xu Z. A Decarboxylative C(
sp
3
)−N Bond Forming Reaction to Construct 4‐Imidazolidinones
via
Post‐Ugi Cascade Sequence in One Pot. Adv Synth Catal 2020. [DOI: 10.1002/adsc.202000736] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Gui‐Ting Song
- National & Local Joint Engineering Research Center of Targeted and Innovative Therapeutics Chongqing Engineering Laboratory of Targeted and Innovative Therapeutics Chongqing Key Laboratory of Kinase Modulators as Innovative Medicine Chongqing Collaborative Innovation Center of Targeted and Innovative Therapeutics College of Pharmacy & International Academy of Targeted Therapeutics and Innovation Chongqing University of Arts and Sciences Chongqing 402160 People's Republic of China
| | - Chuan‐Hua Qu
- National & Local Joint Engineering Research Center of Targeted and Innovative Therapeutics Chongqing Engineering Laboratory of Targeted and Innovative Therapeutics Chongqing Key Laboratory of Kinase Modulators as Innovative Medicine Chongqing Collaborative Innovation Center of Targeted and Innovative Therapeutics College of Pharmacy & International Academy of Targeted Therapeutics and Innovation Chongqing University of Arts and Sciences Chongqing 402160 People's Republic of China
| | - Jie Lei
- National & Local Joint Engineering Research Center of Targeted and Innovative Therapeutics Chongqing Engineering Laboratory of Targeted and Innovative Therapeutics Chongqing Key Laboratory of Kinase Modulators as Innovative Medicine Chongqing Collaborative Innovation Center of Targeted and Innovative Therapeutics College of Pharmacy & International Academy of Targeted Therapeutics and Innovation Chongqing University of Arts and Sciences Chongqing 402160 People's Republic of China
- Department of Pharmaceutical Sciences College of Pharmacy University of Arkansas for Medical Sciences Little Rock AR 72205 United States
| | - Wei Yan
- Department of Pharmaceutical Sciences College of Pharmacy University of Arkansas for Medical Sciences Little Rock AR 72205 United States
| | - Dian‐Yong Tang
- National & Local Joint Engineering Research Center of Targeted and Innovative Therapeutics Chongqing Engineering Laboratory of Targeted and Innovative Therapeutics Chongqing Key Laboratory of Kinase Modulators as Innovative Medicine Chongqing Collaborative Innovation Center of Targeted and Innovative Therapeutics College of Pharmacy & International Academy of Targeted Therapeutics and Innovation Chongqing University of Arts and Sciences Chongqing 402160 People's Republic of China
| | - Hong‐yu Li
- Department of Pharmaceutical Sciences College of Pharmacy University of Arkansas for Medical Sciences Little Rock AR 72205 United States
| | - Zhong‐Zhu Chen
- National & Local Joint Engineering Research Center of Targeted and Innovative Therapeutics Chongqing Engineering Laboratory of Targeted and Innovative Therapeutics Chongqing Key Laboratory of Kinase Modulators as Innovative Medicine Chongqing Collaborative Innovation Center of Targeted and Innovative Therapeutics College of Pharmacy & International Academy of Targeted Therapeutics and Innovation Chongqing University of Arts and Sciences Chongqing 402160 People's Republic of China
| | - Zhi‐Gang Xu
- National & Local Joint Engineering Research Center of Targeted and Innovative Therapeutics Chongqing Engineering Laboratory of Targeted and Innovative Therapeutics Chongqing Key Laboratory of Kinase Modulators as Innovative Medicine Chongqing Collaborative Innovation Center of Targeted and Innovative Therapeutics College of Pharmacy & International Academy of Targeted Therapeutics and Innovation Chongqing University of Arts and Sciences Chongqing 402160 People's Republic of China
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10
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Four-component 1,4-addition Ugi reaction catalyzed by the Schiff base derived from Tröger's base and BINOL. Tetrahedron Lett 2020. [DOI: 10.1016/j.tetlet.2020.152388] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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11
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Kumar G, Mogha NK, Kumar M, Subodh, Masram DT. NiO nanocomposites/rGO as a heterogeneous catalyst for imidazole scaffolds with applications in inhibiting the DNA binding activity. Dalton Trans 2020; 49:1963-1974. [PMID: 31984397 DOI: 10.1039/c9dt04416g] [Citation(s) in RCA: 32] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Herein, we report a facile approach to synthesize a new highly versatile heterogeneous catalyst by spontaneous aerial oxidation based on nickel oxide nanocomposites immobilized on surface-functionalized reduced graphene oxide sheets. NiO nanocomposite/reduced graphene oxide (rGO-NiO-NC) is a highly efficient, cost-effective, reusable, selective, and eco-friendly nano-catalyst that does not lose any activity even after five reaction cycles. Nickel loading on the rGO-NiO nanocomposite was found to be 3.3 at%, which contributes to the effective and efficient use of rGO-NiO-NCs as a nano-catalyst for the synthesis of imidazole derivatives. Consequently, a series of imidazole derivatives were synthesized, catalyzed by rGO-NiO-NCs, in 60 min with high yields (86% to 96%) under green conditions. Furthermore, the present synthetic methodology was used for the synthesis of highly aromatic imidazole derivatives (B1-B3) whose calf thymus-DNA binding affinities suggest their superior inhibition ability to displace ethidium bromide (EB), which was further confirmed by molecular docking studies. Additionally, the green chemistry matrix of the synthesis reaction was found to be very close to ideal values, such as carbon efficiency (82.32%), E-factor (0.51), atom economy (77.86%), process mass intensity (1.51), and reaction mass efficiency (66.14%).
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Affiliation(s)
- Gyanendra Kumar
- Department of Chemistry, University of Delhi, Delhi-110007, India. dhanraj_masram27@rediff mail.com
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12
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Shaabani A, Mohammadian R, Afshari R, Hooshmand SE, Nazeri MT, Javanbakht S. The status of isocyanide-based multi-component reactions in Iran (2010-2018). Mol Divers 2020; 25:1145-1210. [PMID: 32072381 DOI: 10.1007/s11030-020-10049-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Accepted: 02/06/2020] [Indexed: 11/30/2022]
Abstract
Isocyanides as key intermediates and magic reactants have been widely applied in organic reactions for direct access to a broad spectrum of remarkable organic compounds. Although the history of these magical compounds dates back more than 100 years, it still has been drawing widespread attention of chemists who confirmed their versatility and effectiveness. Because of their wide spectrum of pharmacological, industrial and synthetic applications, many reactions with the utilization of isocyanides are reported in the literature. In this context, Iranian scientist played a significant role in the growth of isocyanides chemistry. The present review article covers literature from the period starting from 2010 onward and encompasses new synthetic routes and organic transformation involving isocyanides by Iranian researchers. During this period, a diverse range of isocyanide-based multi-component reactions (I-MCRs) has been reported such as a new modification of Ugi, post-Ugi, Passerini and Groebke-Blackburn-Bienayme condensation reactions, isocyanide-based [1 + 4] cycloaddition reactions, isocyanide-acetylene-based MCRs, isocyanide and Meldrum's acid-based MCRs, several unexpected reactions besides green mediums and novel catalytic systems for the synthesis of diverse kinds of pharmaceutically and industrially remarkable heterocyclic and linear organic compounds. This review also emphasizes the neoteric applications of I-MCR for the synthesis of valuable peptide and pseudopeptide scaffolds, enzyme immobilization and functionalization of materials with tailorable properties that can play important roles in the plethora of applications.
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Affiliation(s)
- Ahmad Shaabani
- Faculty of Chemistry, Shahid Beheshti University, Daneshjou Boulevard, Tehran, 19396-4716, Iran.
| | - Reza Mohammadian
- Faculty of Chemistry, Shahid Beheshti University, Daneshjou Boulevard, Tehran, 19396-4716, Iran
| | - Ronak Afshari
- Faculty of Chemistry, Shahid Beheshti University, Daneshjou Boulevard, Tehran, 19396-4716, Iran
| | - Seyyed Emad Hooshmand
- Faculty of Chemistry, Shahid Beheshti University, Daneshjou Boulevard, Tehran, 19396-4716, Iran
| | - Mohammad Taghi Nazeri
- Faculty of Chemistry, Shahid Beheshti University, Daneshjou Boulevard, Tehran, 19396-4716, Iran
| | - Siamak Javanbakht
- Faculty of Chemistry, Shahid Beheshti University, Daneshjou Boulevard, Tehran, 19396-4716, Iran
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13
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Feng QY, Zhu J, Wang MX, Tong S. Organocatalytic Double Ugi Reaction with Statistical Amplification of Product Enantiopurity: A Linker Cleavage Approach To Access Highly Enantiopure Ugi Products. Org Lett 2019; 22:483-487. [DOI: 10.1021/acs.orglett.9b04239] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Qi-Yun Feng
- Key Laboratory of Bioorganic Phosphorous and Chemical Biology (Ministry of Education), Tsinghua University, 100084 Beijing, P. R. China
| | - Jieping Zhu
- Laboratory of Synthesis and Natural Products, Institute of Chemical Sciences and Engineering, Ecole Poltechnique Fédérale de Lausanne EPFL-SB-ISIC-LSPN, BCH 5304, 1015 Lausanne, Switzerland
| | - Mei-Xiang Wang
- Key Laboratory of Bioorganic Phosphorous and Chemical Biology (Ministry of Education), Tsinghua University, 100084 Beijing, P. R. China
| | - Shuo Tong
- Key Laboratory of Bioorganic Phosphorous and Chemical Biology (Ministry of Education), Tsinghua University, 100084 Beijing, P. R. China
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14
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Amador-Sánchez YA, Aguilar-Granda A, Flores-Cruz R, González-Calderón D, Orta C, Rodríguez-Molina B, Jiménez-Sánchez A, Miranda LD. Diversity-Oriented Synthesis of Highly Fluorescent Fused Isoquinolines for Specific Subcellular Localization. J Org Chem 2019; 85:633-649. [PMID: 31830777 DOI: 10.1021/acs.joc.9b02712] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A multicomponent diversity-oriented synthesis of new highly emissive tetracyclic isoquinolines that target specific organelles is described. The title compounds were prepared via a three-step protocol starting with an Ugi four-component reaction, followed by either an intramolecular alkyne hydroarylation and subsequent alkene isomerization or through a Pomeranz-Fritsch-type cyclization with a final intramolecular Heck reaction. Subcellular localization studies of these compounds using green channel confocal microscopy revealed remarkable and distinctive distribution patterns in live cells, showing an unprecedented high selectivity and imaging contrast. The differentiated organelle visualization-including localizers for mitochondria, lysosomes, Golgi apparatus, endoplasmic reticulum, and plasma membrane-was achieved by varying the nature of the tetracyclic system and substituent pattern, changing the original four-component set in the starting Ugi reaction.
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Affiliation(s)
- Yoarhy A Amador-Sánchez
- Instituto de Química , Universidad Nacional Autónoma de México , Circuito Exterior , Ciudad Universitaria, Coyoacán , Ciudad de México 04510 , Mexico
| | - Andrés Aguilar-Granda
- Instituto de Química , Universidad Nacional Autónoma de México , Circuito Exterior , Ciudad Universitaria, Coyoacán , Ciudad de México 04510 , Mexico
| | - Ricardo Flores-Cruz
- Instituto de Química , Universidad Nacional Autónoma de México , Circuito Exterior , Ciudad Universitaria, Coyoacán , Ciudad de México 04510 , Mexico
| | - Davir González-Calderón
- Instituto de Química , Universidad Nacional Autónoma de México , Circuito Exterior , Ciudad Universitaria, Coyoacán , Ciudad de México 04510 , Mexico
| | - Cynthia Orta
- Instituto de Química , Universidad Nacional Autónoma de México , Circuito Exterior , Ciudad Universitaria, Coyoacán , Ciudad de México 04510 , Mexico
| | - Braulio Rodríguez-Molina
- Instituto de Química , Universidad Nacional Autónoma de México , Circuito Exterior , Ciudad Universitaria, Coyoacán , Ciudad de México 04510 , Mexico
| | - Arturo Jiménez-Sánchez
- Instituto de Química , Universidad Nacional Autónoma de México , Circuito Exterior , Ciudad Universitaria, Coyoacán , Ciudad de México 04510 , Mexico
| | - Luis D Miranda
- Instituto de Química , Universidad Nacional Autónoma de México , Circuito Exterior , Ciudad Universitaria, Coyoacán , Ciudad de México 04510 , Mexico
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15
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Kutovaya IV, Zakharova EA, Shmatova OI, Nenajdenko VG. Macrocyclic Pseudopeptides Having Proline or Pipecolic Acid Residues. Efficient Synthesis via Ugi-Click Strategy. European J Org Chem 2019. [DOI: 10.1002/ejoc.201900780] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Irina V. Kutovaya
- Department of Chemistry; Lomonosov Moscow State University; 119991 Moscow Russia
| | - Elena A. Zakharova
- Department of Chemistry; Lomonosov Moscow State University; 119991 Moscow Russia
| | - Olga I. Shmatova
- Department of Chemistry; Lomonosov Moscow State University; 119991 Moscow Russia
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16
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Abstract
This Review is devoted to the chemistry of macrocyclic peptides having heterocyclic fragments in their structure. These motifs are present in many natural products and synthetic macrocycles designed against a particular biochemical target. Thiazole and oxazole are particularly common constituents of naturally occurring macrocyclic peptide molecules. This frequency of occurrence is because the thiazole and oxazole rings originate from cysteine, serine, and threonine residues. Whereas other heteroaryl groups are found less frequently, they offer many insightful lessons that range from conformational control to receptor/ligand interactions. Many options to develop new and improved technologies to prepare natural products have appeared in recent years, and the synthetic community has been pursuing synthetic macrocycles that have no precedent in nature. This Review attempts to summarize progress in this area.
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Affiliation(s)
- Ivan V Smolyar
- Department of Chemistry , Moscow State University , Leninskije Gory , 199991 Moscow , Russia
| | - Andrei K Yudin
- Davenport Research Laboratories, Department of Chemistry , University of Toronto , 80 St. George Street , Toronto , Ontario M5S 3H6 , Canada
| | - Valentine G Nenajdenko
- Department of Chemistry , Moscow State University , Leninskije Gory , 199991 Moscow , Russia
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17
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Reguera L, Rivera DG. Multicomponent Reaction Toolbox for Peptide Macrocyclization and Stapling. Chem Rev 2019; 119:9836-9860. [PMID: 30990310 DOI: 10.1021/acs.chemrev.8b00744] [Citation(s) in RCA: 182] [Impact Index Per Article: 36.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
In the past decade, multicomponent reactions have experienced a renaissance as powerful peptide macrocyclization tools enabling the rapid creation of skeletal complexity and diversity with low synthetic cost. This review provides both a historical and modern overview of the development of the peptide multicomponent macrocyclization as a strategy capable to compete with the classic peptide cyclization methods in terms of chemical efficiency and synthetic scope. We prove that the utilization of multicomponent reactions for cyclizing peptides by either their termini or side chains provides a key advantage over those more established methods; that is, the possibility to explore the cyclic peptide chemotype space not only at the amino acid sequence but also at the ring-forming moiety. Owing to its multicomponent nature, this type of peptide cyclization process is well-suited to generate diversity at both the endo- and exo-cyclic fragments formed during the ring-closing step, which stands as a distinctive and useful characteristic for the creation and screening of cyclic peptide libraries. Examples of the novel multicomponent peptide stapling approach and heterocycle ring-forming macrocyclizations are included, along with multicomponent methods incorporating macrocyclization handles and the one-pot syntheses of macromulticyclic peptide cages. Interesting applications of this strategy in the field of drug discovery and chemical biology are provided.
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Affiliation(s)
- Leslie Reguera
- Center for Natural Product Research, Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba
| | - Daniel G Rivera
- Center for Natural Product Research, Faculty of Chemistry , University of Havana , Zapata y G , Havana 10400 , Cuba
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18
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Barreto ADFS, Andrade CKZ. Synthesis of (macro)heterocycles by consecutive/repetitive isocyanide-based multicomponent reactions. Beilstein J Org Chem 2019; 15:906-930. [PMID: 31164928 PMCID: PMC6541343 DOI: 10.3762/bjoc.15.88] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2019] [Accepted: 03/27/2019] [Indexed: 12/13/2022] Open
Abstract
Isocyanide-based multicomponent reactions are a versatile tool in the synthesis of heterocycles. This review describes recently developed approaches based on the combination of consecutive or repetitive isocyanide-based multicomponent reactions for the synthesis of structurally diverse heterocycles. These strategies have also allowed the synthesis of a plethora of macroheterocycles in a reduced number of steps.
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Affiliation(s)
- Angélica de Fátima S Barreto
- Universidade de Brasília, Instituto de Química, Laboratório de Química Metodológica e Orgânica Sintética (LaQMOS), 70910-970 Brasília-DF, Brazil
| | - Carlos Kleber Z Andrade
- Universidade de Brasília, Instituto de Química, Laboratório de Química Metodológica e Orgânica Sintética (LaQMOS), 70910-970 Brasília-DF, Brazil
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19
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Neochoritis CG, Kazemi Miraki M, Abdelraheem EMM, Surmiak E, Zarganes-Tzitzikas T, Łabuzek B, Holak TA, Dömling A. Design of indole- and MCR-based macrocycles as p53-MDM2 antagonists. Beilstein J Org Chem 2019; 15:513-520. [PMID: 30873235 PMCID: PMC6404402 DOI: 10.3762/bjoc.15.45] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Accepted: 02/14/2019] [Indexed: 01/02/2023] Open
Abstract
Macrocycles were designed to antagonize the protein–protein interaction p53-MDM2 based on the three-finger pharmacophore F19W23L25. The synthesis was accomplished by a rapid, one-pot synthesis of indole-based macrocycles based on Ugi macrocyclization. The reaction of 12 different α,ω-amino acids and different indole-3-carboxaldehyde derivatives afforded a unique library of macrocycles otherwise difficult to access. Screening of the library for p53-MDM2 inhibition by fluorescence polarization and 1H,15N HSQC NMR measurements confirm MDM2 binding.
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Affiliation(s)
- Constantinos G Neochoritis
- Department of Drug Design, University of Groningen, Antonius Deusinglaan 1, 9700 AD Groningen, The Netherlands
| | - Maryam Kazemi Miraki
- Chemistry Department, Tarbiat Modares University, P.O. Box 14155-4838, Tehran, Iran
| | - Eman M M Abdelraheem
- Department of Drug Design, University of Groningen, Antonius Deusinglaan 1, 9700 AD Groningen, The Netherlands
| | - Ewa Surmiak
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland
| | - Tryfon Zarganes-Tzitzikas
- Department of Drug Design, University of Groningen, Antonius Deusinglaan 1, 9700 AD Groningen, The Netherlands
| | - Beata Łabuzek
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland
| | - Tad A Holak
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland
| | - Alexander Dömling
- Department of Drug Design, University of Groningen, Antonius Deusinglaan 1, 9700 AD Groningen, The Netherlands
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20
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Abstract
Tetrazole derivatives are a prime class of heterocycles, very important to medicinal chemistry and drug design due to not only their bioisosterism to carboxylic acid and amide moieties but also to their metabolic stability and other beneficial physicochemical properties. Although more than 20 FDA-approved drugs contain 1 H- or 2 H-tetrazole substituents, their exact binding mode, structural biology, 3D conformations, and in general their chemical behavior is not fully understood. Importantly, multicomponent reaction (MCR) chemistry offers convergent access to multiple tetrazole scaffolds providing the three important elements of novelty, diversity, and complexity, yet MCR pathways to tetrazoles are far from completely explored. Here, we review the use of multicomponent reactions for the preparation of substituted tetrazole derivatives. We highlight specific applications and general trends holding therein and discuss synthetic approaches and their value by analyzing scope and limitations, and also enlighten their receptor binding mode. Finally, we estimated the prospects of further research in this field.
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Affiliation(s)
- Constantinos G. Neochoritis
- Drug Design Group, Department of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9700 AD Groningen, The Netherlands
| | - Ting Zhao
- Drug Design Group, Department of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9700 AD Groningen, The Netherlands
| | - Alexander Dömling
- Drug Design Group, Department of Pharmacy, University of Groningen, Antonius Deusinglaan 1, 9700 AD Groningen, The Netherlands
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21
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Zakharova EA, Shmatova OI, Kutovaya IV, Khrustalev VN, Nenajdenko VG. Synthesis of macrocyclic peptidomimetics via the Ugi-click-strategy. Org Biomol Chem 2019; 17:3433-3445. [DOI: 10.1039/c9ob00229d] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
The Ugi-click-strategy was employed for the synthesis of 12–28 membered 1,2,3-triazole derived macrocyclic peptidomimetics.
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Affiliation(s)
| | - Olga I. Shmatova
- Department of Chemistry
- Lomonosov Moscow State University
- Moscow
- Russia
| | - Irina V. Kutovaya
- Department of Chemistry
- Lomonosov Moscow State University
- Moscow
- Russia
| | - Victor N. Khrustalev
- Peoples’ Friendship University of Russia (RUDN University)
- Moscow 117198
- Russia
- National Research Center “Kurchatov Institute”
- 123182 Moscow
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22
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Méndez Y, De Armas G, Pérez I, Rojas T, Valdés-Tresanco ME, Izquierdo M, Alonso Del Rivero M, Álvarez-Ginarte YM, Valiente PA, Soto C, de León L, Vasco AV, Scott WL, Westermann B, González-Bacerio J, Rivera DG. Discovery of potent and selective inhibitors of the Escherichia coli M1-aminopeptidase via multicomponent solid-phase synthesis of tetrazole-peptidomimetics. Eur J Med Chem 2018; 163:481-499. [PMID: 30544037 DOI: 10.1016/j.ejmech.2018.11.074] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2018] [Revised: 11/12/2018] [Accepted: 11/30/2018] [Indexed: 12/14/2022]
Abstract
The Escherichia coli neutral M1-aminopeptidase (ePepN) is a novel target identified for the development of antimicrobials. Here we describe a solid-phase multicomponent approach which enabled the discovery of potent ePepN inhibitors. The on-resin protocol, developed in the frame of the Distributed Drug Discovery (D3) program, comprises the implementation of parallel Ugi-azide four-component reactions with resin-bound amino acids, thus leading to the rapid preparation of a focused library of tetrazole-peptidomimetics (TPMs) suitable for biological screening. By dose-response studies, three compounds were identified as potent and selective ePepN inhibitors, as little inhibitory effect was exhibited for the porcine ortholog aminopeptidase. The study allowed for the identification of the key structural features required for a high ePepN inhibitory activity. The most potent and selective inhibitor (TPM 11) showed a non-competitive inhibition profile of ePepN. We predicted that both diastereomers of compound TPM 11 bind to a site distinct from that occupied by the substrate. Theoretical models suggested that TPM 11 has an alternative inhibition mechanism that doesn't involve Zn coordination. On the other hand, the activity landscape analysis provided a rationale for our findings. Of note, compound TMP 2 showed in vitro antibacterial activity against Escherichia coli. Furthermore, none of the three identified inhibitors is a potent haemolytic agent, and only two compounds showed moderate cytotoxic activity toward the murine myeloma P3X63Ag cells. These results point to promising compounds for the future development of rationally designed TPMs as antibacterial agents.
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Affiliation(s)
- Yanira Méndez
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba; Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120, Halle/Saale, Germany
| | - German De Armas
- Center for Protein Studies, Faculty of Biology, University of Havana, 25 y J, 10400, La Habana, Cuba
| | - Idalia Pérez
- Center for Protein Studies, Faculty of Biology, University of Havana, 25 y J, 10400, La Habana, Cuba
| | - Tamara Rojas
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
| | - Mario E Valdés-Tresanco
- Center for Protein Studies, Faculty of Biology, University of Havana, 25 y J, 10400, La Habana, Cuba
| | - Maikel Izquierdo
- Center for Protein Studies, Faculty of Biology, University of Havana, 25 y J, 10400, La Habana, Cuba
| | - Maday Alonso Del Rivero
- Center for Protein Studies, Faculty of Biology, University of Havana, 25 y J, 10400, La Habana, Cuba
| | - Yoanna María Álvarez-Ginarte
- Laboratory of Theoretical and Computational Chemistry, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba
| | - Pedro A Valiente
- Center for Protein Studies, Faculty of Biology, University of Havana, 25 y J, 10400, La Habana, Cuba.
| | - Carmen Soto
- Center for Protein Studies, Faculty of Biology, University of Havana, 25 y J, 10400, La Habana, Cuba
| | - Lena de León
- Center for Protein Studies, Faculty of Biology, University of Havana, 25 y J, 10400, La Habana, Cuba
| | - Aldrin V Vasco
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120, Halle/Saale, Germany
| | - William L Scott
- Department of Chemistry and Chemical Biology, Indiana University Purdue University Indianapolis, Indianapolis, IN 46202, United States
| | - Bernhard Westermann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120, Halle/Saale, Germany
| | - Jorge González-Bacerio
- Center for Protein Studies, Faculty of Biology, University of Havana, 25 y J, 10400, La Habana, Cuba.
| | - Daniel G Rivera
- Center for Natural Products Research, Faculty of Chemistry, University of Havana, Zapata y G, 10400, La Habana, Cuba; Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, 06120, Halle/Saale, Germany.
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23
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Dannecker PK, Sehlinger A, Meier MAR. Polymacrocycles Derived via Ugi Multi-Component Reactions. Macromol Rapid Commun 2018; 40:e1800748. [PMID: 30457196 DOI: 10.1002/marc.201800748] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2018] [Revised: 11/08/2018] [Indexed: 12/26/2022]
Abstract
The synthesis of macrocycles based on the Ugi-4CR has been thoroughly explored by Wessjohann and coworkers, while polymerizations utilizing the Ugi-4CR are already patented by Ugi and recently studied more in detail, developing a new trend in polymer chemistry. Here, the combination of both, that is, the synthesis of polymacrocycles, is demonstrated. As diverse functional groups can be easily introduced in a macrocycle via Ugi-4CR, a straightforward design of polymacrocycles is achieved in a two-step procedure. First, the Ugi-4CR of 10-undecenoic acid, a diamine, a diisocyanide, and an aldehyde results in diversely substituted macrocycles having two terminal double bonds. Subsequently, these macrocycles are polymerized by ADMET (acyclic diene metathesis) or thiol-ene polymerization to generate polymacrocycles with potential application in coordination chemistry as, for example, sensors, filters, or phase-transfer catalysts. Moreover, the setup of the literature-known Ugi macrocyclization is simplified by systematic reaction screening.
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Affiliation(s)
| | - Ansgar Sehlinger
- Karlsruhe Institute of Technology, Straße am Forum 7, 76131, Karlsruhe, Germany
| | - Michael A R Meier
- Karlsruhe Institute of Technology, Straße am Forum 7, 76131, Karlsruhe, Germany
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24
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Kong HH, Pan HL, Ding MW. Synthesis of 2-Tetrazolyl-Substituted 3-Acylpyrroles via a Sequential Ugi-Azide/Ag-Catalyzed Oxidative Cycloisomerization Reaction. J Org Chem 2018; 83:12921-12930. [DOI: 10.1021/acs.joc.8b01984] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Han-Han Kong
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Hubei International Scientific and Technological Cooperation Base of Pesticide and Green Synthesis, Central China Normal University, Wuhan 430079, People’s Republic of China
| | - Hong-Ling Pan
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Hubei International Scientific and Technological Cooperation Base of Pesticide and Green Synthesis, Central China Normal University, Wuhan 430079, People’s Republic of China
| | - Ming-Wu Ding
- Key Laboratory of Pesticide & Chemical Biology of Ministry of Education, Hubei International Scientific and Technological Cooperation Base of Pesticide and Green Synthesis, Central China Normal University, Wuhan 430079, People’s Republic of China
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25
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Zhang J, Wu YH, Wang JC, Du FS, Li ZC. Functional Poly(ester–amide)s with Tertiary Ester Linkages via the Passerini Multicomponent Polymerization of a Dicarboxylic Acid and a Diisocyanide with Different Electron-Deficient Ketones. Macromolecules 2018. [DOI: 10.1021/acs.macromol.8b01168] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Jian Zhang
- Beijing National Laboratory for Molecular Sciences (BNLMS), Key Laboratory of Polymer Chemistry & Physics of Ministry of Education, Department of Polymer Science & Engineering, College of Chemistry and Molecular Engineering, Center for Soft Matter Science and Engineering, Peking University, Beijing 100871, China
| | - Yu-Huan Wu
- Beijing National Laboratory for Molecular Sciences (BNLMS), Key Laboratory of Polymer Chemistry & Physics of Ministry of Education, Department of Polymer Science & Engineering, College of Chemistry and Molecular Engineering, Center for Soft Matter Science and Engineering, Peking University, Beijing 100871, China
| | - Jia-Chen Wang
- Beijing National Laboratory for Molecular Sciences (BNLMS), Key Laboratory of Polymer Chemistry & Physics of Ministry of Education, Department of Polymer Science & Engineering, College of Chemistry and Molecular Engineering, Center for Soft Matter Science and Engineering, Peking University, Beijing 100871, China
| | - Fu-Sheng Du
- Beijing National Laboratory for Molecular Sciences (BNLMS), Key Laboratory of Polymer Chemistry & Physics of Ministry of Education, Department of Polymer Science & Engineering, College of Chemistry and Molecular Engineering, Center for Soft Matter Science and Engineering, Peking University, Beijing 100871, China
| | - Zi-Chen Li
- Beijing National Laboratory for Molecular Sciences (BNLMS), Key Laboratory of Polymer Chemistry & Physics of Ministry of Education, Department of Polymer Science & Engineering, College of Chemistry and Molecular Engineering, Center for Soft Matter Science and Engineering, Peking University, Beijing 100871, China
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26
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Abstract
Artificial macrocycles recently became popular as a novel research field in drug discovery. As opposed to their natural twins, artificial macrocycles promise to have better control on synthesizability and control over their physicochemical properties resulting in druglike properties. Very few synthetic methods allow for the convergent, fast but diverse access to large macrocycles chemical space. One synthetic technology to access artificial macrocycles with potential biological activity, multicomponent reactions, is reviewed here, with a focus on our own work. We believe that synthetic chemists have to acquaint themselves more with structure and activity to leverage the design aspect of their daily work.
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Affiliation(s)
- Eman M M Abdelraheem
- University of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands,
- Chemistry Department, Faculty of Science, Sohag University, Sohag, 82524, Egypt
| | - Shabnam Shaabani
- University of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands,
| | - Alexander Dömling
- University of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands,
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27
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Hernández-Vázquez E, Chávez-Riveros A, Romo-Pérez A, Ramírez-Apán MT, Chávez-Blanco AD, Morales-Bárcenas R, Dueñas-González A, Miranda LD. Cytotoxic Activity and Structure-Activity Relationship of Triazole-Containing Bis(Aryl Ether) Macrocycles. ChemMedChem 2018; 13:1193-1209. [DOI: 10.1002/cmdc.201800075] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2018] [Revised: 03/12/2018] [Indexed: 11/08/2022]
Affiliation(s)
- Eduardo Hernández-Vázquez
- Department of Organic Chemistry; Instituto de Química; UNAM, Circuito Exterior S.N.; Ciudad Universitaria; Coyoacán México, DF 04510 México
| | - Alejandra Chávez-Riveros
- Department of Organic Chemistry; Instituto de Química; UNAM, Circuito Exterior S.N.; Ciudad Universitaria; Coyoacán México, DF 04510 México
| | - Adriana Romo-Pérez
- Department of Organic Chemistry; Instituto de Química; UNAM, Circuito Exterior S.N.; Ciudad Universitaria; Coyoacán México, DF 04510 México
| | - María Teresa Ramírez-Apán
- Department of Organic Chemistry; Instituto de Química; UNAM, Circuito Exterior S.N.; Ciudad Universitaria; Coyoacán México, DF 04510 México
| | | | | | - Alfonso Dueñas-González
- Instituto de Investigaciones Biomédicas / Instituto Nacional de Cancerología, Tlalpan; Ciudad de México, CP 14080 Mexico
| | - Luis D. Miranda
- Department of Organic Chemistry; Instituto de Química; UNAM, Circuito Exterior S.N.; Ciudad Universitaria; Coyoacán México, DF 04510 México
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28
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Kaldas SJ, Rogova T, Nenajdenko VG, Yudin AK. Modular Synthesis of β-Amino Boronate Peptidomimetics. J Org Chem 2018; 83:7296-7302. [DOI: 10.1021/acs.joc.8b00325] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Sherif J. Kaldas
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada
| | - Tatiana Rogova
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada
| | | | - Andrei K. Yudin
- Davenport Research Laboratories, Department of Chemistry, University of Toronto, 80 Saint George Street, Toronto, Ontario M5S 3H6, Canada
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29
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Abdelraheem EMM, Khaksar S, Dömling A. Concise Synthesis of Macrocycles by Multicomponent Reactions. SYNTHESIS-STUTTGART 2018; 50:1027-1038. [PMID: 31439965 PMCID: PMC6706064 DOI: 10.1055/s-0036-1590946] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
A short reaction pathway was devised to synthesize a library of artificial 18-27-membered macrocycles. The five-step reaction sequence involves ring opening of a cyclic anhydride with a diamine, esterification, coupling with an amino acid isocyanide, saponification, and, finally, macro-ring closure using an Ugi or, alternatively, a Passerini multicomponent reaction. Three out of the five steps allow for the versatile introduction of linker elements, side chains, and substituents with aromatic, heteroaromatic, and aliphatic character. The versatile pathway is described for 15 different target macrocycles on a mmol scale. Artificial macrocycles have recently become of great interest due to their potential to bind to difficult post-genomic targets.
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Affiliation(s)
- Eman M. M. Abdelraheem
- Department of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
- Chemistry Department, Faculty of Science, Sohag University, Sohag, 82524, Egypt
| | - Samad Khaksar
- Department of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
- Chemistry Department, Ayatollah Amoli Branch, Islamic Azad University, Amol, Iran
| | - Alexander Dömling
- Department of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
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30
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Jobin S, Méjean A, Galindo SM, Liang X, Vézina-Dawod S, Biron E. Toward solid-phase peptide fragment ligation by a traceless-Ugi multicomponent reaction approach. Org Biomol Chem 2018; 14:11230-11237. [PMID: 27841889 DOI: 10.1039/c6ob02342h] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
A new methodology to couple peptide fragments on solid support using a traceless isocyanide-based multicomponent reaction is described. The approach uses a microwave-assisted on-resin Ugi four-component reaction to attach a carboxyl free peptide to a supported peptide bearing a free N-terminal amine via the formation of an N-protected amide bond at the ligation site. Afterward, the generated backbone amide protecting group can be efficiently removed by microwave-assisted acidolysis with trifluoroacetic acid to afford a fully deprotected peptide. This straightforward Ugi reaction/deprotection approach was applied to condense various fragment lengths and provided a variety of oligopeptides.
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Affiliation(s)
- Steve Jobin
- Faculty of Pharmacy, Université Laval and Laboratory of Medicinal Chemistry, Centre de recherche du Centre Hospitalier Universitaire de Québec, Québec (QC) G1V 4G2, Canada.
| | - Alexia Méjean
- Faculty of Pharmacy, Université Laval and Laboratory of Medicinal Chemistry, Centre de recherche du Centre Hospitalier Universitaire de Québec, Québec (QC) G1V 4G2, Canada.
| | - Sindy-Marcela Galindo
- Faculty of Pharmacy, Université Laval and Laboratory of Medicinal Chemistry, Centre de recherche du Centre Hospitalier Universitaire de Québec, Québec (QC) G1V 4G2, Canada.
| | - Xinxia Liang
- Faculty of Pharmacy, Université Laval and Laboratory of Medicinal Chemistry, Centre de recherche du Centre Hospitalier Universitaire de Québec, Québec (QC) G1V 4G2, Canada.
| | - Simon Vézina-Dawod
- Faculty of Pharmacy, Université Laval and Laboratory of Medicinal Chemistry, Centre de recherche du Centre Hospitalier Universitaire de Québec, Québec (QC) G1V 4G2, Canada.
| | - Eric Biron
- Faculty of Pharmacy, Université Laval and Laboratory of Medicinal Chemistry, Centre de recherche du Centre Hospitalier Universitaire de Québec, Québec (QC) G1V 4G2, Canada.
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31
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Patil P, Mishra B, Sheombarsing G, Kurpiewska K, Kalinowska-Tłuścik J, Dömling A. Library-to-Library Synthesis of Highly Substituted α-Aminomethyl Tetrazoles via Ugi Reaction. ACS COMBINATORIAL SCIENCE 2018; 20:70-74. [PMID: 29215263 PMCID: PMC5813278 DOI: 10.1021/acscombsci.7b00137] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/21/2017] [Revised: 11/21/2017] [Indexed: 12/26/2022]
Abstract
α-Aminomethyl tetrazoles, recently made accessible by an Ugi multicomponent reaction (MCR), were shown to be excellent starting materials for a further Ugi MCR, yielding substituted N-methyl-2-(((1-methyl-1H-tetrazol-5-yl)methyl)amino)acetamides having four points of diversity in a library-to-library approach. The scope and limitations of the two-step sequence was explored by conducting more than 50 reactions. Irrespective of electron-rich and electron-deficient oxo-components and the nature of the isocyanide component, the reactions give excellent yields. Sterically less hindered α-aminomethyl tetrazoles give better yields of in further Ugi MCR. The target scaffold has four points of diversity and is finding applications to fill screening decks for high-throughput screening (HTS) in the European Lead Factory and in structure-based drug design.
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Affiliation(s)
- Pravin Patil
- University
of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Bhupendra Mishra
- University
of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Gitanjali Sheombarsing
- University
of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Katarzyna Kurpiewska
- Jagiellonian
University, Faculty of Chemistry, Department
of Crystal Chemistry and Crystal Physics, Biocrystallography Group, Ingardena 3, 30-060 Kraków, Poland
| | - Justyna Kalinowska-Tłuścik
- Jagiellonian
University, Faculty of Chemistry, Department
of Crystal Chemistry and Crystal Physics, Biocrystallography Group, Ingardena 3, 30-060 Kraków, Poland
| | - Alexander Dömling
- University
of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
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32
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Abdelraheem EMM, Khaksar S, Kurpiewska K, Kalinowska-Tłuścik J, Shaabani S, Dömling A. Two-Step Macrocycle Synthesis by Classical Ugi Reaction. J Org Chem 2018. [PMID: 29327924 DOI: 10.1021/acs.joc.7b02984.] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The direct nonpeptidic macrocycle synthesis of α-isocyano-ω-amines via the classical Ugi four-component reaction (U-4CR) is introduced. Herein an efficient and flexible two-step procedure to complex macrocycles is reported. In the first step, the reaction between unprotected diamines and isocyanocarboxylic acids gives high diversity of unprecedented building blocks in high yield. In the next step, the α-isocyano-ω-amines undergo a U-4CR with high diversity of aldehydes and carboxylic acids in a one-pot procedure. This synthetic approach is short and efficient and leads to a wide range of macrocycles with different ring sizes.
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Affiliation(s)
- Eman M M Abdelraheem
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands.,Chemistry Department, Faculty of Science, Sohag University , Sohag, 82524, Egypt
| | - Samad Khaksar
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Katarzyna Kurpiewska
- Faculty of Chemistry, Jagiellonian University , Gronostajowa 2, 30-387 Krakow, Poland
| | | | - Shabnam Shaabani
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Alexander Dömling
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
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33
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Abdelraheem EMM, Khaksar S, Kurpiewska K, Kalinowska-Tłuścik J, Shaabani S, Dömling A. Two-Step Macrocycle Synthesis by Classical Ugi Reaction. J Org Chem 2018; 83:1441-1447. [PMID: 29327924 PMCID: PMC5799868 DOI: 10.1021/acs.joc.7b02984] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
![]()
The direct nonpeptidic
macrocycle synthesis of α-isocyano-ω-amines
via the classical Ugi four-component reaction (U-4CR) is introduced.
Herein an efficient and flexible two-step procedure to complex macrocycles
is reported. In the first step, the reaction between unprotected diamines
and isocyanocarboxylic acids gives high diversity of unprecedented
building blocks in high yield. In the next step, the α-isocyano-ω-amines
undergo a U-4CR with high diversity of aldehydes and carboxylic acids
in a one-pot procedure. This synthetic approach is short and efficient
and leads to a wide range of macrocycles with different ring sizes.
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Affiliation(s)
- Eman M M Abdelraheem
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands.,Chemistry Department, Faculty of Science, Sohag University , Sohag, 82524, Egypt
| | - Samad Khaksar
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Katarzyna Kurpiewska
- Faculty of Chemistry, Jagiellonian University , Gronostajowa 2, 30-387 Krakow, Poland
| | | | - Shabnam Shaabani
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Alexander Dömling
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
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34
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Abdelraheem EM, Madhavachary R, Rossetti A, Kurpiewska K, Kalinowska-Tłuścik J, Shaabani S, Dömling A. Ugi Multicomponent Reaction Based Synthesis of Medium-Sized Rings. Org Lett 2017; 19:6176-6179. [PMID: 29083197 PMCID: PMC5698880 DOI: 10.1021/acs.orglett.7b03094] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Indexed: 11/30/2022]
Abstract
An Ugi multicomponent reaction based two-step strategy was applied to generate medium-sized rings. In the first linear expansion phase, a series of diamines reacted with cyclic anhydrides to produce different lengths of terminal synthetic amino acids as the starting material for the second phase. The Ugi-4-center 3-component reaction was utilized to construct complex medium-sized rings (8-11) by the addition of isocyanides and oxo components. This method features mild conditions and a broad substrate scope.
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Affiliation(s)
- Eman M.
M. Abdelraheem
- Department
of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
- Chemistry
Department, Faculty of Science, Sohag University, Sohag 82524, Egypt
| | - Rudrakshula Madhavachary
- Department
of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Arianna Rossetti
- Department
of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Katarzyna Kurpiewska
- Jagiellonian
University, Faculty of Chemistry, Gronostajowa 2, 30-387 Krakow, Poland
| | | | - Shabnam Shaabani
- Department
of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Alexander Dömling
- Department
of Drug Design, University of Groningen, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
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35
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Abdelraheem EMM, de Haan MP, Patil P, Kurpiewska K, Kalinowska-Tłuścik J, Shaabani S, Dömling A. Concise Synthesis of Tetrazole Macrocycle. Org Lett 2017; 19:5078-5081. [PMID: 28901777 PMCID: PMC5633831 DOI: 10.1021/acs.orglett.7b02319] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
A concise two step synthesis of tetrazole
containing macrocycles
from readily accessible starting materials is presented. The first
step comprises a chemoselective amidation of amino acid derived isocyanocarboxylicacid
esters with unprotected symmetrical diamines to afford diverse α-isocyano-ω-amines.
In the second step, the α-isocyano-ω-amines undergo an
Ugi tetrazole reaction to close the macrocycle. Advantageously, this
strategy allows short access to 11–19-membered macrocycles
in which substituents can be independently varied at three different
positions.
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Affiliation(s)
- Eman M M Abdelraheem
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands.,Chemistry Department, Faculty of Science, Sohag University , Sohag 82524, Egypt
| | - Michel P de Haan
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Pravin Patil
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Katarzyna Kurpiewska
- Faculty of Chemistry, Jagiellonian University , 3 Ingardena Street, 30-060 Krakow, Poland
| | | | - Shabnam Shaabani
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Alexander Dömling
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
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36
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Schütznerová E, Oliver AG, Slough GA, Krchňák V. Traceless Solid-Phase Synthesis of Fused Chiral Macrocycles via Conformational Constraint-Assisted Cyclic Iminium Formation. Chemistry 2017; 23:12876-12885. [DOI: 10.1002/chem.201702461] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Eva Schütznerová
- Institute of Molecular and Translation Medicine; Hněvotínská 5 Olomouc 779 00 Czech Republic
| | - Allen G. Oliver
- Department of Organic Chemistry and Biochemistry; University of Notre Dame; Notre Dame IN 46556 USA
| | - Greg A. Slough
- Chemistry Department; Kalamazoo College; 1200 Academy St. Kalamazoo MI 49006 USA
| | - Viktor Krchňák
- Department of Organic Chemistry; Palacký University; 17. listopadu 12 771 46 Olomouc Czech Republic
- Department of Organic Chemistry and Biochemistry; University of Notre Dame; Notre Dame IN 46556 USA
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37
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Madhavachary R, Abdelraheem EMM, Rossetti A, Twarda-Clapa A, Musielak B, Kurpiewska K, Kalinowska-Tłuścik J, Holak TA, Dömling A. Two-Step Synthesis of Complex Artificial Macrocyclic Compounds. Angew Chem Int Ed Engl 2017; 56:10725-10729. [PMID: 28691783 DOI: 10.1002/anie.201704426] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2017] [Revised: 06/23/2017] [Indexed: 11/08/2022]
Abstract
The design and synthesis of head-to-tail linked artificial macrocycles using the Ugi-reaction has been developed. This synthetic approach of just two steps is unprecedented, short, efficient and works over a wide range of medium (8-11) and macrocyclic (≥12) loop sizes. The substrate scope and functional group tolerance is exceptional. Using this approach, we have synthesized 39 novel macrocycles by two or even one single synthetic operation. The properties of our macrocycles are discussed with respect to their potential to bind to biological targets that are not druggable by conventional, drug-like compounds. As an application of these artificial macrocycles we highlight potent p53-MDM2 antagonism.
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Affiliation(s)
- Rudrakshula Madhavachary
- Drug Design, University of Groningen, Address Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | - Eman M M Abdelraheem
- Drug Design, University of Groningen, Address Deusinglaan 1, 9713 AV, Groningen, The Netherlands.,Chemistry Department, Faculty of Science, Sohag University, Sohag, 82524, Egypt
| | - Arianna Rossetti
- Drug Design, University of Groningen, Address Deusinglaan 1, 9713 AV, Groningen, The Netherlands
| | | | - Bogdan Musielak
- Faculty of Chemistry, Jagiellonian University, 3 Ingardena Street, 30-060, Krakow, Poland
| | - Katarzyna Kurpiewska
- Faculty of Chemistry, Jagiellonian University, 3 Ingardena Street, 30-060, Krakow, Poland
| | | | - Tad A Holak
- Faculty of Chemistry, Jagiellonian University, 3 Ingardena Street, 30-060, Krakow, Poland
| | - Alexander Dömling
- Drug Design, University of Groningen, Address Deusinglaan 1, 9713 AV, Groningen, The Netherlands
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38
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Madhavachary R, Abdelraheem EMM, Rossetti A, Twarda-Clapa A, Musielak B, Kurpiewska K, Kalinowska-Tłuścik J, Holak TA, Dömling A. Two-Step Synthesis of Complex Artificial Macrocyclic Compounds. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201704426] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
| | - Eman M. M. Abdelraheem
- Drug Design; University of Groningen; Address Deusinglaan 1 9713 AV Groningen The Netherlands
- Chemistry Department; Faculty of Science; Sohag University; Sohag 82524 Egypt
| | - Arianna Rossetti
- Drug Design; University of Groningen; Address Deusinglaan 1 9713 AV Groningen The Netherlands
| | | | - Bogdan Musielak
- Faculty of Chemistry; Jagiellonian University; 3 Ingardena Street 30-060 Krakow Poland
| | - Katarzyna Kurpiewska
- Faculty of Chemistry; Jagiellonian University; 3 Ingardena Street 30-060 Krakow Poland
| | | | - Tad A. Holak
- Faculty of Chemistry; Jagiellonian University; 3 Ingardena Street 30-060 Krakow Poland
| | - Alexander Dömling
- Drug Design; University of Groningen; Address Deusinglaan 1 9713 AV Groningen The Netherlands
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39
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Santhosh L, Nagamangala SR, Thimmalapura VM, Vommina SV. Synthesis of 1, 5- Disubstituted TetrazoleviaUgi Azide Reaction: An Asymmetric Induction Approach. ChemistrySelect 2017. [DOI: 10.1002/slct.201701032] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- L. Santhosh
- Department of Studies in Chemistry, Central College Campus; Bangalore University; Dr. B. R. AmbedkarVeedhi Bangalore 560001 India
| | - Sagar R. Nagamangala
- Department of Studies in Chemistry, Central College Campus; Bangalore University; Dr. B. R. AmbedkarVeedhi Bangalore 560001 India
| | - Vishwanatha M. Thimmalapura
- Department of Studies in Chemistry, Central College Campus; Bangalore University; Dr. B. R. AmbedkarVeedhi Bangalore 560001 India
| | - Sureshbabu V. Vommina
- Department of Studies in Chemistry, Central College Campus; Bangalore University; Dr. B. R. AmbedkarVeedhi Bangalore 560001 India
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40
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Shaabani A, Afshari R. Synthesis of Carboxamide-Functionalized Multiwall Carbon Nanotubes via
Ugi Multicomponent Reaction: Water-Dispersible Peptidomimetic Nanohybrid as Controlled Drug Delivery Vehicle. ChemistrySelect 2017. [DOI: 10.1002/slct.201700615] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Ahmad Shaabani
- Department of Chemistry (Organic section); Shahid Beheshti University, G. C., P. O. Box 19396-4716; Tehran Iran
| | - Ronak Afshari
- Department of Chemistry (Organic section); Shahid Beheshti University, G. C., P. O. Box 19396-4716; Tehran Iran
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41
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Vishwanatha TM, Bergamaschi E, Dömling A. Sulfur-Switch Ugi Reaction for Macrocyclic Disulfide-Bridged Peptidomimetics. Org Lett 2017; 19:3195-3198. [PMID: 28581763 PMCID: PMC5477004 DOI: 10.1021/acs.orglett.7b01324] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
![]()
A general
strategy is introduced for the efficient synthetic access
of disulfide linked artificial macrocycles via a Ugi four-component
reaction (U4CR) followed by oxidative cyclization. The double-mercapto
input is proposed for use in the Ugi reaction, thereby yielding all
six topologically possible combinations. The protocol is convergent
and short and enables the production of novel disulfide peptidomimetics
in a highly general fashion.
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Affiliation(s)
- Thimmalapura M Vishwanatha
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Enrico Bergamaschi
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Alexander Dömling
- Department of Drug Design, University of Groningen , A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
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42
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Wessjohann LA, Kreye O, Rivera DG. One‐Pot Assembly of Amino Acid Bridged Hybrid Macromulticyclic Cages through Multiple Multicomponent Macrocyclizations. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201610801] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Ludger A. Wessjohann
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Oliver Kreye
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Daniel G. Rivera
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
- Center for Natural Products Research Faculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
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43
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Wessjohann LA, Kreye O, Rivera DG. One‐Pot Assembly of Amino Acid Bridged Hybrid Macromulticyclic Cages through Multiple Multicomponent Macrocyclizations. Angew Chem Int Ed Engl 2017; 56:3501-3505. [DOI: 10.1002/anie.201610801] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Revised: 01/24/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Ludger A. Wessjohann
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Oliver Kreye
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Daniel G. Rivera
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
- Center for Natural Products Research Faculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
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44
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Abdelraheem EM, Shaabani S, Dömling A. Artificial Macrocycles by Ugi Reaction and Passerini Ring Closure. J Org Chem 2016; 81:8789-8795. [PMID: 27598302 PMCID: PMC6280654 DOI: 10.1021/acs.joc.6b01430] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Artificial macrocycles can be convergently synthesized by a sequence of an Ugi multicomponent reaction (MCR) followed by an intramolecular Passerini MCR used to close the macrocycle. Significantly, in this work, the first intramolecular macrocyclization through a Passerini reaction is described. We describe 21 macrocycles of a size of 15-20. The resulting macrocyclic depsipeptides are model compounds for natural products and could find applications in drug discovery.
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Affiliation(s)
- Eman M.M. Abdelraheem
- University of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
- Chemistry Department, Faculty of Science, Sohag University, Sohag, 82524, Egypt
| | - Shabnam Shaabani
- University of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Alexander Dömling
- University of Groningen, Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| |
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45
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Kroon E, Kurpiewska K, Kalinowska-Tłuścik J, Dömling A. Cleavable β-Cyanoethyl Isocyanide in the Ugi Tetrazole Reaction. Org Lett 2016; 18:4762-4765. [PMID: 27610711 DOI: 10.1021/acs.orglett.6b01826] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
β-Cyanoethyl isocyanide is introduced as a cleavable isocyanide in the Ugi tetrazole reaction. Eleven examples are described that exhibit a broad scope and are obtained in good overall yields. The obtained 1H-tetrazole scaffold is an important bioisostere for carboxylic acids, and the method described here is a valuable alternative route to known procedures.
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Affiliation(s)
- Edwin Kroon
- University of Groningen , Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
| | - Katarzyna Kurpiewska
- Jagiellonian University , Department of Crystal Chemistry and Crystal Physics, Ingardena 3, 30-060 Krakow, Poland
| | - Justyna Kalinowska-Tłuścik
- Jagiellonian University , Department of Crystal Chemistry and Crystal Physics, Ingardena 3, 30-060 Krakow, Poland
| | - Alexander Dömling
- University of Groningen , Department of Drug Design, A. Deusinglaan 1, 9713 AV Groningen, The Netherlands
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46
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Morejón MC, Laub A, Westermann B, Rivera DG, Wessjohann LA. Solution- and Solid-Phase Macrocyclization of Peptides by the Ugi-Smiles Multicomponent Reaction: Synthesis of N-Aryl-Bridged Cyclic Lipopeptides. Org Lett 2016; 18:4096-9. [PMID: 27505031 DOI: 10.1021/acs.orglett.6b02001] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A new multicomponent methodology for the solution- and solid-phase macrocyclization of peptides is described. The approach comprises the utilization of the Ugi-Smiles reaction for the cyclization of 3-nitrotyrosine-containing peptides either by the N-terminus or the lysine side-chain amino groups. Both the on-resin and solution cyclizations took place with good to excellent efficiency in the presence of an aldehyde and a lipidic isocyanide, while the use of paraformaldehyde required an aminocatalysis-mediated imine formation prior to the on-resin Ugi-Smiles ring closure. The introduction of a turn motif in the peptide sequence facilitated the cyclization step, shortened the reaction time, and delivered crude products with >90% purity. This powerful method provided a variety of structurally novel N-aryl-bridged cyclic lipopeptides occurring as single atropisomers.
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Affiliation(s)
- Micjel C Morejón
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400 Havana, Cuba
| | - Annegret Laub
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
| | - Bernhard Westermann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
| | - Daniel G Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany.,Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400 Havana, Cuba
| | - Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120 Halle/Saale, Germany
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47
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Neochoritis CG, Livadiotou D, Tsiaras V, Zarganes-Tzitzikas T, Samatidou E. The indoleacetic acids in IMCRs: a three-component Ugi reaction involving TosMIC. Tetrahedron 2016. [DOI: 10.1016/j.tet.2016.07.013] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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48
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Sun L, Gao P, Zhan P, Liu X. Pyrazolo[1,5-a]pyrimidine-based macrocycles as novel HIV-1 inhibitors: a patent evaluation of WO2015123182. Expert Opin Ther Pat 2016; 26:979-86. [PMID: 27398994 DOI: 10.1080/13543776.2016.1210127] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
The emergence of drug resistance in Combination Antiretroviral Therapy (cART) confirms a continuing need to investigate novel HIV-1 inhibitors with unexplored mechanisms of action. Recently, a series of pyrazolopyrimidine-based macrocyclic compounds were reported as inhibitors of HIV-1 replication disclosed in the patent WO2015123182. Most of the disclosed compounds possessed in vitro antiviral potency in single-digit nanomolar range, which were determined by MT-2 cell assay. Then, the structural diversity, pharmacophore similarity of HIV-1 IN-LEDGF/p75 inhibitors, and implications for drug design were analyzed. In the end of this article, a glimpse of some macrocycles as potent antiviral agents (drug candidates) was provided. Some strategies and technologies enabling macrocycle design were also described. We expect that further development of these macrocyclic compounds will offer new anti-HIV-1 drug candidates.
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Affiliation(s)
- Lin Sun
- a Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), School of Pharmaceutical Sciences , Shandong University , Jinan , P. R. China
| | - Ping Gao
- a Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), School of Pharmaceutical Sciences , Shandong University , Jinan , P. R. China
| | - Peng Zhan
- a Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), School of Pharmaceutical Sciences , Shandong University , Jinan , P. R. China
| | - Xinyong Liu
- a Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), School of Pharmaceutical Sciences , Shandong University , Jinan , P. R. China
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Wessjohann LA, Morejón MC, Ojeda GM, Rhoden CRB, Rivera DG. Applications of Convertible Isonitriles in the Ligation and Macrocyclization of Multicomponent Reaction-Derived Peptides and Depsipeptides. J Org Chem 2016; 81:6535-45. [PMID: 27390908 DOI: 10.1021/acs.joc.6b01150] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Peptide ligation and macrocyclization are among the most relevant approaches in the field of peptide chemistry. Whereas a variety of strategies relying on coupling reagents and native chemical ligation are available, there is a continuous need for efficient peptide ligation and cyclization methods. Herein we report on the utilization of convertible isonitriles as effective synthetic tools for the ligation and macrocyclization of peptides arising from isocyanide-based multicomponent reactions. The strategy relies on the use of convertible isonitriles-derived from Fukuyama amines-and peptide carboxylic acids in Ugi and Passerini reactions to afford N-alkylated peptides and depsipeptides, respectively, followed by conversion of the C-terminal amide onto either N-peptidoacyl indoles or pyrroles. Such activated peptides proved efficient in the ligation to peptidic, lipidic and fluorescently labeled amines and in macrocyclization protocols. As a result, a wide set of N-substituted peptides (with methyl, glycosyl and amino acids as N-substituents), cyclic N-methylated peptides and a depsipeptide were produced in good yields using conditions that involve either classical heating or microwave irradiation. This report improves the repertoire of peptide covalent modification methods by exploiting the synthetic potential of multicomponent reactions and convertible isonitriles.
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Affiliation(s)
- Ludger A Wessjohann
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
| | - Micjel C Morejón
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
| | - Gerardo M Ojeda
- Center for Natural Products Research, Faculty of Chemistry, University of Havana , Zapata y G, 10400, La Habana, Cuba
| | - Cristiano R B Rhoden
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
| | - Daniel G Rivera
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry , Weinberg 3, 06120, Halle/Saale, Germany
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