1
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Kumar P, Nalli Y, Singh S, Wakchaure PD, Gor R, Ghadge VA, Kim E, Ramalingam S, Azger Dusthackeer VN, Yoon YJ, Ganguly B, Shinde PB. Dactylides A-C, three new bioactive 22-membered macrolides produced by Dactylosporangium aurantiacum. J Antibiot (Tokyo) 2023; 76:503-510. [PMID: 37208457 DOI: 10.1038/s41429-023-00632-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Revised: 04/15/2023] [Accepted: 05/02/2023] [Indexed: 05/21/2023]
Abstract
Three new 22-membered polyol macrolides, dactylides A-C (1-3), were isolated from Dactylosporangium aurantiacum ATCC 23491 employing repeated chromatographic separations, and their structures were established based on detailed analysis of NMR and MS data. The relative configurations at the stereocenters were established via vicinal 1H-1H coupling constants, NOE correlations, and by application of Kishi's universal NMR database. In order to get insights into the biosynthetic pathway of 1-3, the genome sequence of the producer strain D. aurantiacum was obtained and the putative biosynthetic gene cluster encoding their biosynthesis was identified through bioinformatic analysis using antiSMASH. Compounds 1-3 showed significant in-vitro antimycobacterial and cytotoxic activity.
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Affiliation(s)
- Pankaj Kumar
- Natural Products & Green Chemistry Division, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Council of Scientific and Industrial Research (CSIR), Bhavnagar, Gujarat, 364002, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Yedukondalu Nalli
- Natural Products & Green Chemistry Division, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Council of Scientific and Industrial Research (CSIR), Bhavnagar, Gujarat, 364002, India
| | - Sanju Singh
- Natural Products & Green Chemistry Division, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Council of Scientific and Industrial Research (CSIR), Bhavnagar, Gujarat, 364002, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Padmaja D Wakchaure
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
- Computation and Simulation Unit, Analytical and Environmental Science Division and Centralized Instrument Facility, CSIR-Central Salt and Marine Chemicals Research Institute, Bhavnagar, Gujarat, 364002, India
| | - Ravi Gor
- Department of Genetic Engineering, School of Bio-Engineering, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, 603203, India
| | - Vishal A Ghadge
- Natural Products & Green Chemistry Division, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Council of Scientific and Industrial Research (CSIR), Bhavnagar, Gujarat, 364002, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Eunji Kim
- Natural Products Research Institute, College of Pharmacy, Seoul National University, Seoul, 08826, Republic of Korea
| | - Satish Ramalingam
- Department of Genetic Engineering, School of Bio-Engineering, SRM Institute of Science and Technology, Kattankulathur, Tamil Nadu, 603203, India
| | - V N Azger Dusthackeer
- Department of Bacteriology, National Institute for Research in Tuberculosis, ICMR, Sathyamoorty road, Chetpet, Chennai, 600031, Tamil Nadu, India
| | - Yeo Joon Yoon
- Natural Products Research Institute, College of Pharmacy, Seoul National University, Seoul, 08826, Republic of Korea
| | - Bishwajit Ganguly
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
- Computation and Simulation Unit, Analytical and Environmental Science Division and Centralized Instrument Facility, CSIR-Central Salt and Marine Chemicals Research Institute, Bhavnagar, Gujarat, 364002, India
| | - Pramod B Shinde
- Natural Products & Green Chemistry Division, CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI), Council of Scientific and Industrial Research (CSIR), Bhavnagar, Gujarat, 364002, India.
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India.
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2
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Caradec T, Trivelli X, Desmecht E, Peucelle V, Khalife J, Hartkoorn RC. Dactylosporolides: Glycosylated Macrolides from Dactylosporangium fulvum. JOURNAL OF NATURAL PRODUCTS 2022; 85:2714-2722. [PMID: 36512509 PMCID: PMC9791991 DOI: 10.1021/acs.jnatprod.2c00484] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Indexed: 05/30/2023]
Abstract
A series of novel macrolides were discovered from the culture supernatant of the rare soil actinobacteria Dactylosporangium fulvum and named dactylosporolides A-C. The structure and absolute configuration of these dactylosporolides were defined using a combination of NMR structural elucidation and analysis of the dactylosporolide biosynthetic gene cluster. Together these data revealed dactylosporolides to be composed of a central 22-membered macrolactone with an internal hemiketal ring and a protruding ketide tail that were (poly)glycosylated at two distal parts. While bearing no antibiotic activity, these dactylosporolides displayed activity against Plasmodium falciparum 3D7.
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Affiliation(s)
- Thibault Caradec
- Univ.
Lille, CNRS, Inserm, CHU Lille, Institut Pasteur Lille, U1019—UMR
9017—CIIL—Center for Infection and Immunity of Lille, F-59000 Lille, France
| | - Xavier Trivelli
- Univ.
Lille, CNRS, INRAE, Centrale Lille, Univ. Artois, FR 2638—IMEC—Institut
Michel-Eugène Chevreul, Lille 59000, France
| | - Eva Desmecht
- Univ.
Lille, CNRS, Inserm, CHU Lille, Institut Pasteur Lille, U1019—UMR
9017—CIIL—Center for Infection and Immunity of Lille, F-59000 Lille, France
| | - Veronique Peucelle
- Univ.
Lille, CNRS, Inserm, CHU Lille, Institut Pasteur Lille, U1019—UMR
9017—CIIL—Center for Infection and Immunity of Lille, F-59000 Lille, France
| | - Jamal Khalife
- Univ.
Lille, CNRS, Inserm, CHU Lille, Institut Pasteur Lille, U1019—UMR
9017—CIIL—Center for Infection and Immunity of Lille, F-59000 Lille, France
| | - Ruben C. Hartkoorn
- Univ.
Lille, CNRS, Inserm, CHU Lille, Institut Pasteur Lille, U1019—UMR
9017—CIIL—Center for Infection and Immunity of Lille, F-59000 Lille, France
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3
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Liu C, Yamamura H, Hayakawa M, Zhang Z, Oku N, Igarashi Y. Plant growth-promoting and antimicrobial chloropyrroles from a rare actinomycete of the genus Catellatospora. J Antibiot (Tokyo) 2022; 75:655-661. [PMID: 36195750 DOI: 10.1038/s41429-022-00567-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2022] [Revised: 09/08/2022] [Accepted: 09/11/2022] [Indexed: 11/08/2022]
Abstract
Two new chloropyrroles, designated catellatopyrroles A (1) and B (2), along with 2-(2'-hydroxybenzoyl)pyrrole (3), were isolated from a culture extract of an actinomycete of the genus Catellatospora. The structures of 1-3 were elucidated through interpretation of NMR and MS data. Compounds 1 and 2 are the first chloropyrroles substituted by an aliphatic acyl group at the 5-position. Compounds 1-3 promoted root elongation of germinated lettuce seeds at 1-10 μM. While all compounds inhibited the growth of Gram-positive bacteria, activity against Gram-negative bacterium Rhizobium radiobacter and yeasts Candida albicans and Saccharomyces cerevisiae was varied. Compounds 1 and 2 were moderately cytotoxic against P388 cells.
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Affiliation(s)
- Chang Liu
- Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, 5180 Kurokawa, Imizu, Toyama, 939-0398, Japan
| | - Hideki Yamamura
- Department of Biotechnology, Faculty of Life and Environmental Sciences, University of Yamanashi, 4-4-37 Takeda, Kofu, 400-8510, Yamanashi, Japan
| | - Masayuki Hayakawa
- Department of Biotechnology, Faculty of Life and Environmental Sciences, University of Yamanashi, 4-4-37 Takeda, Kofu, 400-8510, Yamanashi, Japan
- Yamanashi Prefectural University, Iida 5-11-1, Kofu, Yamanashi, 400-0035, Japan
| | - Zhiwei Zhang
- Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, 5180 Kurokawa, Imizu, Toyama, 939-0398, Japan
| | - Naoya Oku
- Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, 5180 Kurokawa, Imizu, Toyama, 939-0398, Japan
| | - Yasuhiro Igarashi
- Biotechnology Research Center and Department of Biotechnology, Toyama Prefectural University, 5180 Kurokawa, Imizu, Toyama, 939-0398, Japan.
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4
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Al-Fadhli AA, Threadgill MD, Mohammed F, Sibley P, Al-Ariqi W, Parveen I. Macrolides from rare actinomycetes: Structures and bioactivities. Int J Antimicrob Agents 2022; 59:106523. [PMID: 35041941 DOI: 10.1016/j.ijantimicag.2022.106523] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 01/06/2022] [Accepted: 01/10/2022] [Indexed: 11/19/2022]
Abstract
Rare actinomycetes are the sources of numerous biologically active secondary metabolites with diverse structures. Among them are macrolides, which have been shown to display several antibiotic activities. In this review, twenty-six groups of macrolides from rare actinomycetes are presented, with their bioactivities and structures of representatives from each group. It has been divided according to the classes of macrolides. The most interesting groups with a wide range of biological activities are ammocidins, bafilomycins, neomaclafungins, rosaramicins, spinosyns, and tiacumicins. Most macrolides are obtained from the genus, Micromonospora, with smaller contributions from genera such as Saccharothrix, Amycolatopsis, Nocardiopsis and Catenulispora. These macrolides display unique cytotoxic, antibacterial, antifungal, antimicrobial, insecticidal, anti-trypanosomal, antimalarial, antiprotozoal, antimycobacterial and anti-herpetic activity. Based on their noticeable bioactivities and diverse structures, macrolides from rare actinomycetes deserve to be investigated further for future applications in medicine. This work highlights the bioactivities and structures of important classes of macrolides from rare actinomycetes, which could be used in medicine in the future or which are already in the market.
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Affiliation(s)
- Ammar A Al-Fadhli
- Department of Chemistry, Faculty of Science, Sana'a University, Sana'a, Republic of Yemen; Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Aberystwyth SY23 3DA, United Kingdom.
| | - Michael D Threadgill
- Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Aberystwyth SY23 3DA, United Kingdom; Department of Pharmacy & Pharmacology, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom
| | - Faez Mohammed
- School of Environmental Sciences, University of Guelph, 50 Stone Road E, Guelph, ON, N1G 2W1, Canada; Faculty of Applied Science-Arhab, Sana'a University, Sana'a, Yemen.
| | - Paul Sibley
- School of Environmental Sciences, University of Guelph, 50 Stone Road E, Guelph, ON, N1G 2W1, Canada
| | - Wadie Al-Ariqi
- Department of Chemistry, Faculty of Science, Sana'a University, Sana'a, Republic of Yemen
| | - Ifat Parveen
- Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Aberystwyth SY23 3DA, United Kingdom
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5
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Liu CY, Li YL, Lu JH, Qian LL, Xu K, Wang NN, Chang WQ, Lou HX. Steffimycin F, a new steffimycin-type derivative from the lichen-derived actinomycetes steptomyces sp. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2020.129352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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6
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Son S, Jang M, Lee B, Lee JS, Hong YS, Kim BY, Ko SK, Jang JH, Ahn JS. Catenulisporidins A and B, 16-membered macrolides of the hygrolidin family produced by the chemically underexplored actinobacterium Catenulispora species. Bioorg Med Chem Lett 2020; 30:127005. [PMID: 32046902 DOI: 10.1016/j.bmcl.2020.127005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Accepted: 02/02/2020] [Indexed: 10/25/2022]
Abstract
Two new macrolide metabolites of the hygrolidin family, catenulisporidins A and B (1 and 2), together with a known compound hygrolidin (3), were isolated from the culture broth of the rare actinobacterium Catenulispora sp. KCB13F192. Their structures were elucidated on the basis of HRESIMS spectrometric and NMR spectroscopic analyses. Catenulisporidins A and B are the first example of natural hygrolidin and bafilomycin derivatives featuring a modified macrolide ring, and catenulisporidin A possesses a tetrahydrofuran ring through an ether linkage between C-7 and C-10. In cell-based fluorescent imaging and immunoblot assays, the three compounds were shown to inhibit autophagic flux in HeLa cells.
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Affiliation(s)
- Sangkeun Son
- Anticancer Agent Research Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju 28116, Republic of Korea
| | - Mina Jang
- Anticancer Agent Research Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju 28116, Republic of Korea; Department of Biomolecular Science, KRIBB School of Bioscience, Korea University of Science and Technology (UST), Daejeon 34113, Republic of Korea
| | - Byeongsan Lee
- Anticancer Agent Research Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju 28116, Republic of Korea
| | - Jung-Sook Lee
- Korean Collection for Type Cultures, Korea Research Institute of Bioscience and Biotechnology, Jeongeup 56212, Republic of Korea
| | - Young-Soo Hong
- Anticancer Agent Research Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju 28116, Republic of Korea; Department of Biomolecular Science, KRIBB School of Bioscience, Korea University of Science and Technology (UST), Daejeon 34113, Republic of Korea
| | - Bo Yeon Kim
- Anticancer Agent Research Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju 28116, Republic of Korea; Department of Biomolecular Science, KRIBB School of Bioscience, Korea University of Science and Technology (UST), Daejeon 34113, Republic of Korea
| | - Sung-Kyun Ko
- Natural Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju 28116, Republic of Korea.
| | - Jae-Hyuk Jang
- Department of Biomolecular Science, KRIBB School of Bioscience, Korea University of Science and Technology (UST), Daejeon 34113, Republic of Korea; Natural Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju 28116, Republic of Korea.
| | - Jong Seog Ahn
- Anticancer Agent Research Center, Korea Research Institute of Bioscience and Biotechnology, Cheongju 28116, Republic of Korea; Department of Biomolecular Science, KRIBB School of Bioscience, Korea University of Science and Technology (UST), Daejeon 34113, Republic of Korea.
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7
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Rodríguez JPG, Bernardi DI, Gubiani JR, Magalhães de Oliveira J, Morais-Urano RP, Bertonha AF, Bandeira KF, Bulla JIQ, Sette LD, Ferreira AG, Batista JM, Silva TDS, Santos RAD, Martins CHG, Lira SP, Cunha MGD, Trivella DBB, Grazzia N, Gomes NES, Gadelha F, Miguel DC, Cauz ACG, Brocchi M, Berlinck RGS. Water-Soluble Glutamic Acid Derivatives Produced in Culture by Penicillium solitum IS1-A from King George Island, Maritime Antarctica. JOURNAL OF NATURAL PRODUCTS 2020; 83:55-65. [PMID: 31895573 DOI: 10.1021/acs.jnatprod.9b00635] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A new method of screening was developed to generate 770 organic and water-soluble fractions from extracts of nine species of marine sponges, from the growth media of 18 species of marine-derived fungi, and from the growth media of 13 species of endophytic fungi. The screening results indicated that water-soluble fractions displayed significant bioactivity in cytotoxic, antibiotic, anti-Leishmania, anti-Trypanosoma cruzi, and inhibition of proteasome assays. Purification of water-soluble fractions from the growth medium of Penicillium solitum IS1-A provided the new glutamic acid derivatives solitumine A (1), solitumine B (2), and solitumidines A-D (3-6). The structures of compounds 1-6 have been established by analysis of spectroscopic data, chemical derivatizations, and vibrational circular dichroism calculations. Although no biological activity could be observed for compounds 1-6, the new structures reported for 1-6 indicate that the investigation of water-soluble natural products represents a relevant strategy in finding new secondary metabolites.
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Affiliation(s)
- Julie P G Rodríguez
- Instituto de Química de São Carlos , Universidade de São Paulo , CP 780, CEP 13560-970 , São Carlos , SP , Brazil
| | - Darlon I Bernardi
- Instituto de Química de São Carlos , Universidade de São Paulo , CP 780, CEP 13560-970 , São Carlos , SP , Brazil
| | - Juliana R Gubiani
- Instituto de Química de São Carlos , Universidade de São Paulo , CP 780, CEP 13560-970 , São Carlos , SP , Brazil
| | | | - Raquel P Morais-Urano
- Instituto de Química de São Carlos , Universidade de São Paulo , CP 780, CEP 13560-970 , São Carlos , SP , Brazil
| | - Ariane F Bertonha
- Instituto de Química de São Carlos , Universidade de São Paulo , CP 780, CEP 13560-970 , São Carlos , SP , Brazil
| | - Karin F Bandeira
- Instituto de Química de São Carlos , Universidade de São Paulo , CP 780, CEP 13560-970 , São Carlos , SP , Brazil
| | - Jairo I Q Bulla
- Instituto de Química de São Carlos , Universidade de São Paulo , CP 780, CEP 13560-970 , São Carlos , SP , Brazil
| | - Lara D Sette
- Departamento de Bioquímica e Microbiologia, Instituto de Biociências , Universidade Estadual Paulista "Júlio de Mesquita Filho" , Campus Rio Claro, Avenida 24-A , 1515 , Rio Claro , SP , Brazil
| | - Antonio G Ferreira
- Departamento de Química , Universidade Federal de São Carlos , 13565-905 , São Carlos , SP , Brazil
| | - João M Batista
- Instituto de Ciência e Tecnologia , Universidade Federal de São Paulo , 12231-280 , São José dos Campos , SP , Brazil
| | - Thayná de Souza Silva
- Núcleo de Pesquisa em Ciência e Tecnologia , Universidade de Franca , Avenida Dr. Armando Salles Oliveira, 201. Pq. Universitário , 14404-600 , Franca , SP , Brazil
| | - Raquel Alves Dos Santos
- Núcleo de Pesquisa em Ciência e Tecnologia , Universidade de Franca , Avenida Dr. Armando Salles Oliveira, 201. Pq. Universitário , 14404-600 , Franca , SP , Brazil
| | - Carlos H G Martins
- Núcleo de Pesquisa em Ciência e Tecnologia , Universidade de Franca , Avenida Dr. Armando Salles Oliveira, 201. Pq. Universitário , 14404-600 , Franca , SP , Brazil
| | - Simone P Lira
- Departamento de Ciências Exatas, Escola Superior de Agricultura Luiz de Queiroz , Universidade de São Paulo , Avenida Pádua Dias, 11, CP 9, Agronomia, CEP 13418-900 , Piracicaba , SP , Brazil
| | - Marcos G da Cunha
- Brazilian Biosciences National Laboratory, National Center for Research in Energy and Material, Giuseppe Maximo Scolfaro , 10000, Pólo II de Alta Tecnologia de Campinas , 13083-970 Campinas , SP , Brazil
| | - Daniela B B Trivella
- Brazilian Biosciences National Laboratory, National Center for Research in Energy and Material, Giuseppe Maximo Scolfaro , 10000, Pólo II de Alta Tecnologia de Campinas , 13083-970 Campinas , SP , Brazil
| | - Nathalia Grazzia
- Instituto de Biologia , Universidade Estadual de Campinas , CEP 13083-862 , Campinas , SP , Brazil
| | - Natália E S Gomes
- Instituto de Biologia , Universidade Estadual de Campinas , CEP 13083-862 , Campinas , SP , Brazil
| | - Fernanda Gadelha
- Instituto de Biologia , Universidade Estadual de Campinas , CEP 13083-862 , Campinas , SP , Brazil
| | - Danilo C Miguel
- Instituto de Biologia , Universidade Estadual de Campinas , CEP 13083-862 , Campinas , SP , Brazil
| | - Ana Carolina G Cauz
- Instituto de Biologia , Universidade Estadual de Campinas , CEP 13083-862 , Campinas , SP , Brazil
| | - Marcelo Brocchi
- Instituto de Biologia , Universidade Estadual de Campinas , CEP 13083-862 , Campinas , SP , Brazil
| | - Roberto G S Berlinck
- Instituto de Química de São Carlos , Universidade de São Paulo , CP 780, CEP 13560-970 , São Carlos , SP , Brazil
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8
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Liu YF, Yu SS. Survey of natural products reported by Asian research groups in 2018. JOURNAL OF ASIAN NATURAL PRODUCTS RESEARCH 2019; 21:1129-1150. [PMID: 31736363 DOI: 10.1080/10286020.2019.1684474] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2019] [Revised: 10/18/2019] [Accepted: 10/20/2019] [Indexed: 06/10/2023]
Abstract
The new natural products reported in 2018 in peer-reviewed articles in journals with good reputations were reviewed and analyzed. The advances made by Asian research groups in the field of natural products chemistry in 2018 were summarized. Compounds with unique structural features and/or promising bioactivities originating from Asian natural sources were discussed based on their structural classification.
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Affiliation(s)
- Yan Fei Liu
- State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China
| | - Shi-Shan Yu
- State Key Laboratory of Bioactive Substance and Function of Natural Medicines, Institute of Materia Medica, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100050, China
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9
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Abstract
A personal selection of 32 recent papers is presented covering various aspects of current developments in bioorganic chemistry and novel natural products such as vlasoulamine A from Vladimiria souliei.
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