1
|
Kano T, Uozumi R, Maruyama T, Tada N, Itoh A. Modular Synthesis of Tripeptide Analogs with an Aminobitriazole Skeleton Using Diynyl Benziodoxolone as a Trivalent Platform. J Org Chem 2024; 89:11761-11765. [PMID: 39082689 DOI: 10.1021/acs.joc.4c00999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/17/2024]
Abstract
A new synthesis method of tripeptide analogs with an aminobitriazole skeleton was proposed. The method involves assembling three amino acid-derived modules at the amino group site and onto a triisopropylsilyl diynyl benziodoxolone by copper-catalyzed electrophilic diynylation of amino acid-derived sulfonamides, chemoselective azide-alkyne cycloadditions with amino acid-derived azides, and deprotection. Various complex aminobitriazoles substituted with pyrene, nucleoside, and N-acetylglucosamine were also synthesized. The produced aminobitriazoles have three sp3 chiral centers and a C-N axial chirality.
Collapse
Affiliation(s)
- Takashi Kano
- Laboratory of Pharmaceutical Synthetic Chemistry, Faculty of Pharmaceutical Science, Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | - Ryusei Uozumi
- Laboratory of Pharmaceutical Synthetic Chemistry, Faculty of Pharmaceutical Science, Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | | | - Norihiro Tada
- Laboratory of Pharmaceutical Synthetic Chemistry, Faculty of Pharmaceutical Science, Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | - Akichika Itoh
- Laboratory of Pharmaceutical Synthetic Chemistry, Faculty of Pharmaceutical Science, Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| |
Collapse
|
2
|
Le Du E, Ramirez NP, Nicolai S, Scopelliti R, Fadaei‐Tirani F, Wodrich MD, Hari DP, Waser J. X‐Ray and NMR Structural Data of Ethynylbenziodoxolones (EBXs) Reagents and Their Analogues. Helv Chim Acta 2023. [DOI: 10.1002/hlca.202200175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
Affiliation(s)
- Eliott Le Du
- Laboratory of Catalysis and Organic Synthesis Institut des Sciences et Ingénierie Chimique Ecole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO BCH 4306, CH-1015 Lausanne Switzerland
| | - Nieves P. Ramirez
- Laboratory of Catalysis and Organic Synthesis Institut des Sciences et Ingénierie Chimique Ecole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO BCH 4306, CH-1015 Lausanne Switzerland
| | - Stefano Nicolai
- Laboratory of Catalysis and Organic Synthesis Institut des Sciences et Ingénierie Chimique Ecole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO BCH 4306, CH-1015 Lausanne Switzerland
| | - Rosario Scopelliti
- Institut des Sciences et Ingénierie Chimique Ecole Polytechnique Fédérale de Lausanne EPFL SB ISIC GE BCH 2111, CH-1015 Lausanne Switzerland
| | - Farzaneh Fadaei‐Tirani
- Institut des Sciences et Ingénierie Chimique Ecole Polytechnique Fédérale de Lausanne EPFL SB ISIC GE BCH 2111, CH-1015 Lausanne Switzerland
| | - Matthew D. Wodrich
- Laboratory of Catalysis and Organic Synthesis Institut des Sciences et Ingénierie Chimique Ecole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO BCH 4306, CH-1015 Lausanne Switzerland
| | - Durga Prasad Hari
- Laboratory of Catalysis and Organic Synthesis Institut des Sciences et Ingénierie Chimique Ecole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO BCH 4306, CH-1015 Lausanne Switzerland
| | - Jerome Waser
- Laboratory of Catalysis and Organic Synthesis Institut des Sciences et Ingénierie Chimique Ecole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO BCH 4306, CH-1015 Lausanne Switzerland
| |
Collapse
|
3
|
Le Du E, Waser J. Recent progress in alkynylation with hypervalent iodine reagents. Chem Commun (Camb) 2023; 59:1589-1604. [PMID: 36656618 PMCID: PMC9904279 DOI: 10.1039/d2cc06168f] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 12/23/2022] [Indexed: 01/20/2023]
Abstract
Although alkynes are one of the smallest functional groups, they are among the most versatile building blocks for organic chemistry, with applications ranging from biochemistry to material sciences. Alkynylation reactions have traditionally relied on the use of acetylenes as nucleophiles. The discovery and development of ethynyl hypervalent iodine reagents have allowed to greatly expand the transfer of alkynes as electrophilic synthons. In this feature article the progress in the field since 2018 will be presented. After a short introduction on alkynylation reactions and hypervalent iodine reagents, the developments in the synthesis of alkynyl hypervalent iodine reagents will be discussed. Their recent use in base-mediated and transition-metal catalyzed alkynylations will be described. Progress in radical-based alkynylations and atom-economical transformations will then be presented.
Collapse
Affiliation(s)
- Eliott Le Du
- Laboratory of Catalysis and Organic Synthesis, Institute of Chemical Sciences and Engineering École Polytechnique Fédérale de Lausanne EPFL, SB ISIC, LCSO, BCH 4306, 1015, Lausanne, Switzerland.
| | - Jérôme Waser
- Laboratory of Catalysis and Organic Synthesis, Institute of Chemical Sciences and Engineering École Polytechnique Fédérale de Lausanne EPFL, SB ISIC, LCSO, BCH 4306, 1015, Lausanne, Switzerland.
| |
Collapse
|
4
|
Kawakami R, Usui S, Tada N, Itoh A. Late-stage diversification strategy for synthesizing ynamides through copper-catalyzed diynylation and azide-alkyne cycloaddition. Chem Commun (Camb) 2023; 59:450-453. [PMID: 36519388 DOI: 10.1039/d2cc05575a] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
A late-stage diversification strategy for synthesizing ynamides has been developed. This strategy was enabled by the copper-catalyzed direct electrophilic diynylation of sulfonamides with a novel triisopropylsilyl diynyl benziodoxolone, deprotection, and the late-stage chemoselective copper-catalyzed azide-alkyne cycloaddition sequence, which yields various complex molecule-derived ynamides with pyrene, amino acid, nucleoside, and N-acetylglucosamine as substituents.
Collapse
Affiliation(s)
- Ryohei Kawakami
- Laboratory of Pharmaceutical Synthetic Chemistry, Faculty of Pharmaceutical Science, Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu, 501-1196, Japan.
| | - Suguru Usui
- Laboratory of Pharmaceutical Synthetic Chemistry, Faculty of Pharmaceutical Science, Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu, 501-1196, Japan.
| | - Norihiro Tada
- Laboratory of Pharmaceutical Synthetic Chemistry, Faculty of Pharmaceutical Science, Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu, 501-1196, Japan.
| | - Akichika Itoh
- Laboratory of Pharmaceutical Synthetic Chemistry, Faculty of Pharmaceutical Science, Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu, 501-1196, Japan.
| |
Collapse
|
5
|
Shimizu A, Shibata A, Kano T, Kumai Y, Kawakami R, Esaki H, Fukushima K, Tada N, Itoh A. Synthesis of 4-Imidazolidinones from Diamides and Ethynyl Benziodoxolones via Double Michael-Type Addition: Ethynyl Benziodoxolones as Electrophilic Ynol Synthons. Org Lett 2022; 24:8859-8863. [DOI: 10.1021/acs.orglett.2c03648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Ayaka Shimizu
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | - Atsushi Shibata
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | - Takashi Kano
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | - Yuuichi Kumai
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | - Ryouhei Kawakami
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | - Hiroyoshi Esaki
- Hyogo Medical University, 1-1 Mukogawa-cho, Nishinomiya, Hyogo 663-8501, Japan
| | - Kazuaki Fukushima
- Hyogo Medical University, 1-1 Mukogawa-cho, Nishinomiya, Hyogo 663-8501, Japan
| | - Norihiro Tada
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | - Akichika Itoh
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| |
Collapse
|
6
|
Le Du E, Borrel J, Waser J. Copper-Catalyzed Alkynylation of Hydrazides: An Easy Access to Functionalized Azadipeptides. Org Lett 2022; 24:6614-6618. [PMID: 36066898 DOI: 10.1021/acs.orglett.2c02625] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We report a copper-catalyzed alkynylation of azadipeptides using ethynylbenziodoxolone (EBX) reagents. Nonsymmetrical ynehydrazides could be obtained in 25-97% yield using azaglycine derivatives as nucleophiles. The transformation is compatible with most functional groups naturally occurring on amino acid side chains and allows the transfer of silyl-, alkyl-, and aryl-substituted alkynes. The obtained α-alkynyl azaglycine products could be further functionalized by nucleophilic attack or cycloaddition on the triple bond.
Collapse
Affiliation(s)
- Eliott Le Du
- Laboratory of Catalysis and Organic Synthesis, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCSO, BCH 4306, 1015 Lausanne, Switzerland
| | - Julien Borrel
- Laboratory of Catalysis and Organic Synthesis, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCSO, BCH 4306, 1015 Lausanne, Switzerland
| | - Jerome Waser
- Laboratory of Catalysis and Organic Synthesis, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCSO, BCH 4306, 1015 Lausanne, Switzerland
| |
Collapse
|
7
|
Allouche EMD, Grinhagena E, Waser J. Hypervalent Iodine-Mediated Late-Stage Peptide and Protein Functionalization. Angew Chem Int Ed Engl 2022; 61:e202112287. [PMID: 34674359 PMCID: PMC9299824 DOI: 10.1002/anie.202112287] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Indexed: 12/20/2022]
Abstract
Hypervalent iodine compounds are powerful reagents for the development of novel transformations. As they exhibit low toxicity, high functional group tolerance, and stability in biocompatible media, they have been used for the functionalization of biomolecules. Herein, we report recent advances up to June 2021 in peptide and protein modification using hypervalent iodine reagents. Their use as group transfer or oxidizing reagents is discussed in this Minireview, including methods targeting polar, aromatic, or aliphatic amino acids and peptide termini.
Collapse
Affiliation(s)
- Emmanuelle M. D. Allouche
- Laboratory of Catalysis and Organic SynthesisInstitute of Chemical Sciences and EngineeringEcole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 14021015LausanneSwitzerland
| | - Elija Grinhagena
- Laboratory of Catalysis and Organic SynthesisInstitute of Chemical Sciences and EngineeringEcole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 14021015LausanneSwitzerland
| | - Jerome Waser
- Laboratory of Catalysis and Organic SynthesisInstitute of Chemical Sciences and EngineeringEcole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 14021015LausanneSwitzerland
| |
Collapse
|
8
|
Allouche EMD, Grinhagena E, Waser J. Hypervalent Iodine‐Mediated Late‐Stage Peptide and Protein Functionalization. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202112287] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Emmanuelle M. D. Allouche
- Laboratory of Catalysis and Organic Synthesis Institute of Chemical Sciences and Engineering Ecole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 1402 1015 Lausanne Switzerland
| | - Elija Grinhagena
- Laboratory of Catalysis and Organic Synthesis Institute of Chemical Sciences and Engineering Ecole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 1402 1015 Lausanne Switzerland
| | - Jerome Waser
- Laboratory of Catalysis and Organic Synthesis Institute of Chemical Sciences and Engineering Ecole Polytechnique Fédérale de Lausanne, EPFL, SB ISIC, LCSO, BCH 1402 1015 Lausanne Switzerland
| |
Collapse
|
9
|
|
10
|
Borrel J, Waser J. Tosyloxybenziodoxolone: A Platform for Performing the Umpolung of Alkynes in One-Pot Transformations. Org Lett 2021; 24:142-146. [PMID: 34898230 DOI: 10.1021/acs.orglett.1c03771] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Ethynylbenziodoxolones (EBXs) are commonly encountered reagents for the electrophilic alkynylation of nucleophiles. Herein, we report a one-pot, two-step process for EBX generation and their direct application in substrate functionalization. Our approach enables us to bypass the originally mandatory isolation and purification of the reagents, resulting in a more efficient synthesis. We could apply this process to seven different transformations involving both two- and one-electron nucleophiles to obtain a large variety of alkynylated products.
Collapse
Affiliation(s)
- Julien Borrel
- Laboratory of Catalysis and Organic Synthesis and NCCR Catalysis, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCSO, BCH 1402, 1015 Lausanne, Switzerland
| | - Jerome Waser
- Laboratory of Catalysis and Organic Synthesis and NCCR Catalysis, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCSO, BCH 1402, 1015 Lausanne, Switzerland
| |
Collapse
|
11
|
Shimbo D, Maruyama T, Tada N, Itoh A. N-Alkenylation of hydroxamic acid derivatives with ethynyl benziodoxolone to synthesize cis-enamides through vinyl benziodoxolones. Org Biomol Chem 2021; 19:2442-2447. [PMID: 33666207 DOI: 10.1039/d1ob00055a] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
The stereoselective synthesis of cis-β-N-alkoxyamidevinyl benziodoxolones (cis-β-N-RO-amide-VBXs) from O-alkyl hydroxamic acids in the presence of an ethynyl benziodoxolone-acetonitrile complex (EBX-MeCN) is reported herein. The reaction was performed under mild conditions including an aqueous solvent, a mild base, and room temperature. The reaction tolerated various O-alkyl hydroxamic acids derived from carboxylic acids, such as amino acids, pharmaceuticals, and natural products. Vinyl dideuterated cis-β-N-MeO-amide-VBXs were also synthesized using deuterium oxide as the deuterium source. Valine-derived cis-β-N-MeO-amide-VBX was stereospecifically derivatized to hydroxamic acid-derived cis-enamides without the loss of stereoselectivity or reduction in the deuterium/hydrogen ratio.
Collapse
Affiliation(s)
- Daisuke Shimbo
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan.
| | | | | | | |
Collapse
|
12
|
Takai R, Shimbo D, Tada N, Itoh A. Ligand-Enabled Copper-Catalyzed N-Alkynylation of Sulfonamide with Alkynyl Benziodoxolone: Synthesis of Amino Acid-Derived Ynamide. J Org Chem 2021; 86:4699-4713. [PMID: 33719425 DOI: 10.1021/acs.joc.1c00101] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ynamides are versatile building blocks in organic synthesis. However, the synthesis of amino acid-derived ynamides is difficult but in high demand. Herein, we disclose the copper-catalyzed Csp-N coupling of sulfonamide, including amino acid and peptide derivatives, to give ynamides by using alkynyl benziodoxolones with broad functional group tolerance under mild reaction conditions. The electron-rich bipyridine as a ligand and ethanol as solvent were used for the success of this reaction. The usefulness of the obtained amino acid-derived ynamide as building block was showcased by further derivatization to unique amino acid derivatives. A control experiment to elucidate the mechanistic insight was also described.
Collapse
Affiliation(s)
- Ryogo Takai
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | - Daisuke Shimbo
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | - Norihiro Tada
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| | - Akichika Itoh
- Gifu Pharmaceutical University, 1-25-4 Daigaku-nishi, Gifu 501-1196, Japan
| |
Collapse
|
13
|
Sun X, Guo XQ, Chen LM, Kang TR. Synthesis, Characterization of Spirocyclic λ 3 -Iodanes and Their Application to Prepare 4,1-Benzoxazepine-2,5-diones and 1,3-Diynes. Chemistry 2021; 27:4312-4316. [PMID: 33326645 DOI: 10.1002/chem.202005124] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Revised: 12/15/2020] [Indexed: 11/10/2022]
Abstract
Herein, a [3+2] cycloaddition of aza-oxyallylic cations with ethynylbenziodoxolones for synthesis of new λ3 -iodanes containing spirocyclic 4-oxazolidinone has been developed. This cyclic λ3 -iodanes display stability in air and excellent solubility in organic solvent. Using them as substrate, both the 4,1-benzoxazepine-2,5-diones and symmetrical 1,3-diynes derivatives were afforded in high yield under copper(I)-catalyzed conditions.
Collapse
Affiliation(s)
- Xu Sun
- School of Food and Biological Engineering, Chengdu University, Chengdu City, 610106, P. R. China.,Collaborative Innovation Center of Tissue Repair Material of, Sichuan Province, College of Chemistry & Chemical Engineering, China West Normal University, Nanchong City, Sichuan, 637002, P. R. China
| | - Xiao-Qiang Guo
- School of Food and Biological Engineering, Chengdu University, Chengdu City, 610106, P. R. China
| | - Lian-Mei Chen
- School of Food and Biological Engineering, Chengdu University, Chengdu City, 610106, P. R. China
| | - Tai-Ran Kang
- School of Food and Biological Engineering, Chengdu University, Chengdu City, 610106, P. R. China.,Collaborative Innovation Center of Tissue Repair Material of, Sichuan Province, College of Chemistry & Chemical Engineering, China West Normal University, Nanchong City, Sichuan, 637002, P. R. China
| |
Collapse
|
14
|
Zhao L, Yang H, Li R, Tao Y, Guo XF, Anderson EA, Whiting A, Wu N. Synthesis of Sulfonamide-Based Ynamides and Ynamines in Water. J Org Chem 2021; 86:1938-1947. [PMID: 33356269 DOI: 10.1021/acs.joc.0c02326] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Ynamides, though relatively more stable than ynamines, are still moisture-sensitive and prone to hydration especially under acidic and heating conditions. Here we report an environmentally benign, robust protocol to synthesize sulfonamide-based ynamides and arylynamines via Sonogashira coupling reactions in water, using a readily available quaternary ammonium salt as the surfactant.
Collapse
Affiliation(s)
- Lei Zhao
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Science, Guangxi Normal University, Guilin, Guangxi 541004, China
| | - Hongyi Yang
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Science, Guangxi Normal University, Guilin, Guangxi 541004, China
| | - Ruikun Li
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Science, Guangxi Normal University, Guilin, Guangxi 541004, China
| | - Ye Tao
- State Key Laboratory for the Chemistry and Molecular Engineering of Medicinal Resources, School of Chemistry and Pharmaceutical Science, Guangxi Normal University, Guilin, Guangxi 541004, China
| | - Xiao-Feng Guo
- College of Biomedical Engineering, Taiyuan University of Technology, Taiyuan, Shanxi 030024, China
| | - Edward A Anderson
- Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, U.K
| | - Andrew Whiting
- Department of Chemistry, Durham University, South Road, Durham DH1 3LE, U.K
| | - Na Wu
- School of Chemistry and Bioscience, University of Bradford, Bradford, West Yorkshire BD7 1DP, U.K
| |
Collapse
|
15
|
Ura T, Shimbo D, Yudasaka M, Tada N, Itoh A. Synthesis of Phenol-Derived cis-Vinyl Ethers Using Ethynyl Benziodoxolone. Chem Asian J 2020; 15:4000-4004. [PMID: 33058543 DOI: 10.1002/asia.202001102] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Revised: 10/07/2020] [Indexed: 12/19/2022]
Abstract
The stereoselective synthesis of cis-β-phenoxyvinyl benziodoxolones (cis-β-phenol-VBXs) from an ethynyl benziodoxolone-acetonitrile complex (EBX-MeCN) and various phenols is reported herein. The reaction tolerates different phenol derivatives, including complex natural products, and can be conducted under mild conditions. The synthesis was performed in an aqueous solvent in the absence and presence of a catalytic amount of a base. Selectively mono- and di-deuterated cis-β-phenol-VBXs were also prepared. cis-β-Phenol-VBXs were stereospecifically derivatized to cis-alkynylvinyl ethers and cis-iodovinyl ethers without loss of stereoselectivity or reduction in the deuterium/hydrogen ratio.
Collapse
Affiliation(s)
- Tomoki Ura
- Laboratory of Pharmaceutical Synthetic Chemistry, Gifu Pharmaceutical University, 1-25-4, Daigaku-nishi, Gifu, 501-1196, Japan
| | - Daisuke Shimbo
- Laboratory of Pharmaceutical Synthetic Chemistry, Gifu Pharmaceutical University, 1-25-4, Daigaku-nishi, Gifu, 501-1196, Japan
| | - Masaharu Yudasaka
- Laboratory of Pharmaceutical Synthetic Chemistry, Gifu Pharmaceutical University, 1-25-4, Daigaku-nishi, Gifu, 501-1196, Japan
| | - Norihiro Tada
- Laboratory of Pharmaceutical Synthetic Chemistry, Gifu Pharmaceutical University, 1-25-4, Daigaku-nishi, Gifu, 501-1196, Japan
| | - Akichika Itoh
- Laboratory of Pharmaceutical Synthetic Chemistry, Gifu Pharmaceutical University, 1-25-4, Daigaku-nishi, Gifu, 501-1196, Japan
| |
Collapse
|
16
|
Demoret RM, Baker MA, Ohtawa M, Chen S, Lam CC, Khom S, Roberto M, Forli S, Houk KN, Shenvi RA. Synthetic, Mechanistic, and Biological Interrogation of Ginkgo biloba Chemical Space En Route to (-)-Bilobalide. J Am Chem Soc 2020; 142:18599-18618. [PMID: 32991152 PMCID: PMC7727090 DOI: 10.1021/jacs.0c08231] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Here we interrogate the structurally dense (1.64 mcbits/Å3) GABAA receptor antagonist bilobalide, intermediates en route to its synthesis, and related mechanistic questions. 13C isotope labeling identifies an unexpected bromine migration en route to an α-selective, catalytic asymmetric Reformatsky reaction, ruling out an asymmetric allylation pathway. Experiment and computation converge on the driving forces behind two surprising observations. First, an oxetane acetal persists in concentrated mineral acid (1.5 M DCl in THF-d8/D2O); its longevity is correlated to destabilizing steric clash between substituents upon ring-opening. Second, a regioselective oxidation of des-hydroxybilobalide is found to rely on lactone acidification through lone-pair delocalization, which leads to extremely rapid intermolecular enolate equilibration. We also establish equivalent effects of (-)-bilobalide and the nonconvulsive sesquiterpene (-)-jiadifenolide on action potential-independent inhibitory currents at GABAergic synapses, using (+)-bilobalide as a negative control. The high information density of bilobalide distinguishes it from other scaffolds and may characterize natural product (NP) space more generally. Therefore, we also include a Python script to quickly (ca. 132 000 molecules/min) calculate information content (Böttcher scores), which may prove helpful to identify important features of NP space.
Collapse
Affiliation(s)
- Robert M. Demoret
- Department of Chemistry, Scripps Research, La Jolla, California 92037, United States
| | - Meghan A. Baker
- Department of Chemistry, Scripps Research, La Jolla, California 92037, United States
| | - Masaki Ohtawa
- Department of Chemistry, Scripps Research, La Jolla, California 92037, United States
| | - Shuming Chen
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, USA
| | - Ching Ching Lam
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, USA
| | - Sophia Khom
- Departments of Molecular Medicine and Neuroscience, La Jolla, California 92037, United States
| | - Marisa Roberto
- Departments of Molecular Medicine and Neuroscience, La Jolla, California 92037, United States
| | - Stefano Forli
- DISCoBio, Scripps Research, La Jolla, California 92037, United States
| | - Kendall N. Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, CA, USA
| | - Ryan A. Shenvi
- Department of Chemistry, Scripps Research, La Jolla, California 92037, United States
| |
Collapse
|
17
|
Tessier R, Nandi RK, Dwyer BG, Abegg D, Sornay C, Ceballos J, Erb S, Cianférani S, Wagner A, Chaubet G, Adibekian A, Waser J. Ethynylation of Cysteine Residues: From Peptides to Proteins in Vitro and in Living Cells. Angew Chem Int Ed Engl 2020; 59:10961-10970. [DOI: 10.1002/anie.202002626] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2020] [Indexed: 12/11/2022]
Affiliation(s)
- Romain Tessier
- Laboratory of Catalysis and Organic SynthesisEcole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO, BCH 4306 1015 Lausanne Switzerland
- Present address: Department of Chemical BiologyMax Planck Institute of Molecular Physiology Otto-Hahn-Strasse 11 44227 Dortmund Germany
| | - Raj Kumar Nandi
- Laboratory of Catalysis and Organic SynthesisEcole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO, BCH 4306 1015 Lausanne Switzerland
- Present address: Department of ChemistryDiamond Harbour Women's University Sarisha South 24 Parganas West Bengal 743368 India
| | - Brendan G. Dwyer
- Department of ChemistryThe Scripps Research Institute 130 Scripps Way Jupiter FL 33458 USA
| | - Daniel Abegg
- Department of ChemistryThe Scripps Research Institute 130 Scripps Way Jupiter FL 33458 USA
| | - Charlotte Sornay
- Bio-Functional Chemistry (UMR 7199)LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| | - Javier Ceballos
- Laboratory of Catalysis and Organic SynthesisEcole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO, BCH 4306 1015 Lausanne Switzerland
| | - Stéphane Erb
- Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO)Université de StrasbourgCNRS, IPHC UMR 7178 67000 Strasbourg France
| | - Sarah Cianférani
- Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO)Université de StrasbourgCNRS, IPHC UMR 7178 67000 Strasbourg France
| | - Alain Wagner
- Bio-Functional Chemistry (UMR 7199)LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| | - Guilhem Chaubet
- Bio-Functional Chemistry (UMR 7199)LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| | - Alexander Adibekian
- Department of ChemistryThe Scripps Research Institute 130 Scripps Way Jupiter FL 33458 USA
| | - Jerome Waser
- Laboratory of Catalysis and Organic SynthesisEcole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO, BCH 4306 1015 Lausanne Switzerland
| |
Collapse
|
18
|
Tessier R, Nandi RK, Dwyer BG, Abegg D, Sornay C, Ceballos J, Erb S, Cianférani S, Wagner A, Chaubet G, Adibekian A, Waser J. Ethynylation of Cysteine Residues: From Peptides to Proteins in Vitro and in Living Cells. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202002626] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Romain Tessier
- Laboratory of Catalysis and Organic SynthesisEcole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO, BCH 4306 1015 Lausanne Switzerland
- Present address: Department of Chemical BiologyMax Planck Institute of Molecular Physiology Otto-Hahn-Strasse 11 44227 Dortmund Germany
| | - Raj Kumar Nandi
- Laboratory of Catalysis and Organic SynthesisEcole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO, BCH 4306 1015 Lausanne Switzerland
- Present address: Department of ChemistryDiamond Harbour Women's University Sarisha South 24 Parganas West Bengal 743368 India
| | - Brendan G. Dwyer
- Department of ChemistryThe Scripps Research Institute 130 Scripps Way Jupiter FL 33458 USA
| | - Daniel Abegg
- Department of ChemistryThe Scripps Research Institute 130 Scripps Way Jupiter FL 33458 USA
| | - Charlotte Sornay
- Bio-Functional Chemistry (UMR 7199)LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| | - Javier Ceballos
- Laboratory of Catalysis and Organic SynthesisEcole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO, BCH 4306 1015 Lausanne Switzerland
| | - Stéphane Erb
- Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO)Université de StrasbourgCNRS, IPHC UMR 7178 67000 Strasbourg France
| | - Sarah Cianférani
- Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO)Université de StrasbourgCNRS, IPHC UMR 7178 67000 Strasbourg France
| | - Alain Wagner
- Bio-Functional Chemistry (UMR 7199)LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| | - Guilhem Chaubet
- Bio-Functional Chemistry (UMR 7199)LabEx Medalis, University of Strasbourg 74 Route du Rhin 67400 Illkirch-Graffenstaden France
| | - Alexander Adibekian
- Department of ChemistryThe Scripps Research Institute 130 Scripps Way Jupiter FL 33458 USA
| | - Jerome Waser
- Laboratory of Catalysis and Organic SynthesisEcole Polytechnique Fédérale de Lausanne EPFL SB ISIC LCSO, BCH 4306 1015 Lausanne Switzerland
| |
Collapse
|
19
|
Hashishin T, Osawa T, Miyamoto K, Uchiyama M. Practical Synthesis of Ethynyl(phenyl)-λ 3-Iodane Using Calcium Carbide as an Ethynyl Group Source. Front Chem 2020; 8:12. [PMID: 32117863 PMCID: PMC7010717 DOI: 10.3389/fchem.2020.00012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Accepted: 01/07/2020] [Indexed: 11/21/2022] Open
Abstract
Stannylation of calcium carbide followed by Sn–hypervalent iodine(III) exchange reaction cleanly afforded the electrophilic ethynylating agent ethynyl(phenyl)-λ3-iodane in high yield. This two-step method uses very inexpensive materials and is readily operable without any special precautions.
Collapse
Affiliation(s)
- Takahiro Hashishin
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan
| | - Taisei Osawa
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan
| | - Kazunori Miyamoto
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan
| | - Masanobu Uchiyama
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan.,Research Initiative for Supra-Materials (RISM), Shinshu University, Ueda, Japan.,Cluster of Pioneering Research (CPR), Advanced Elements Chemistry Laboratory, RIKEN, Saitama, Japan
| |
Collapse
|
20
|
Shimbo D, Shibata A, Yudasaka M, Maruyama T, Tada N, Uno B, Itoh A. Synthesis of cis-β-Amidevinyl Benziodoxolones from the Ethynyl Benziodoxolone-Chloroform Complex and Sulfonamides. Org Lett 2019; 21:9769-9773. [PMID: 31742414 DOI: 10.1021/acs.orglett.9b03990] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The synthesis of cis-β-amidevinyl benziodoxolones from the ethynyl benziodoxolone-chloroform complex and sulfonamides is reported. Evidence indicates that highly reactive unsubstituted ethynyl benziodoxolone undergoes Michael addition of sulfonamides, including sterically demanding acyclic amino acid derivatives. The synthesis of selectively deuterated cis-β-amidevinyl benziodoxolones and investigation of ethynyl-λ3-iodane reactivity are also described.
Collapse
Affiliation(s)
- Daisuke Shimbo
- Gifu Pharmaceutical University 1-25-4, Daigaku-nishi , Gifu 501-1196 , Japan
| | - Atsushi Shibata
- Gifu Pharmaceutical University 1-25-4, Daigaku-nishi , Gifu 501-1196 , Japan
| | - Masaharu Yudasaka
- Gifu Pharmaceutical University 1-25-4, Daigaku-nishi , Gifu 501-1196 , Japan
| | - Toshifumi Maruyama
- Department of Chemistry and Biomolecular Science, Faculty of Engineering , Gifu University , Yanagido 1-1 , Gifu 501-1193 , Japan
| | - Norihiro Tada
- Gifu Pharmaceutical University 1-25-4, Daigaku-nishi , Gifu 501-1196 , Japan
| | - Bunji Uno
- Gifu Pharmaceutical University 1-25-4, Daigaku-nishi , Gifu 501-1196 , Japan
| | - Akichika Itoh
- Gifu Pharmaceutical University 1-25-4, Daigaku-nishi , Gifu 501-1196 , Japan
| |
Collapse
|
21
|
Yang JD, Li M, Xue XS. Computational I(III)-X BDEs for Benziodoxol(on)e-based Hypervalent Iodine Reagents: Implications for Their Functional Group Transfer Abilities. CHINESE J CHEM 2019. [DOI: 10.1002/cjoc.201800549] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Jin-Dong Yang
- Center of Basic Molecular Science, Department of Chemistry; Tsinghua University; Beijing 100084 China
- State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry; Nankai University; Tianjin 300071 China
| | - Man Li
- State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry; Nankai University; Tianjin 300071 China
| | - Xiao-Song Xue
- State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry; Nankai University; Tianjin 300071 China
| |
Collapse
|