1
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Long T, Zhang L, Cao Z. THF-Assisted CO 2 Reduction Catalyzed by Electride Mg 2EP: Insight from DFT Calculations. J Phys Chem A 2024; 128:5344-5350. [PMID: 38940816 DOI: 10.1021/acs.jpca.4c03500] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/29/2024]
Abstract
Hydroboration and hydrogenation reductions of CO2 catalyzed by a porphyrinoid-based dimagnesium(I) electride (Mg2EP) were investigated by density functional theory calculations. Herein, the presence of potentially excess electrons located at the Mg-Mg bond endows Mg2EP with the ability to activate small molecules such as CO2, HBpin, and H2, thus opening up the possibility for further CO2 conversion. The Mg2EP-catalyzed hydroboration of CO2 to HCOOBpin is predicted to have relatively higher activity in comparison to the hydrogenation reduction to formic acid (HCOOH). Interestingly, the common solvent molecule tetrahydrofuran as an auxiliary can coordinate with the Mg center to effectively weaken the bonding interaction between the dimagnesium center and the intermediate species from the CO2 conversion, thereby promoting the catalytic cycle for the CO2 hydroboration. The present results suggest that the electride Mg2EP is promising for the molecular catalyst in the CO2 transformation.
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Affiliation(s)
- Tairen Long
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 360015, China
| | - Lin Zhang
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 360015, China
| | - Zexing Cao
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 360015, China
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2
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Copper-Catalyzed Homocoupling of Boronic Acids: A Focus on B-to-Cu and Cu-to-Cu Transmetalations. Molecules 2022; 27:molecules27217517. [DOI: 10.3390/molecules27217517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2022] [Revised: 10/25/2022] [Accepted: 10/26/2022] [Indexed: 11/06/2022] Open
Abstract
Controlling and understanding the Cu-catalyzed homocoupling reaction is crucial to prompt the development of efficient Cu-catalyzed cross-coupling reactions. The presence of a coordinating base (hydroxide and methoxide) enables the B-to-Cu(II) transmetalation from aryl boronic acid to CuIICl2 in methanol, through the formation of mixed Cu-(μ-OH)-B intermediates. A second B-to-Cu transmetalation to form bis-aryl Cu(II) complexes is disfavored. Instead, organocopper(II) dimers undergo a coupled transmetalation-electron transfer (TET) allowing the formation of bis-organocopper(III) complexes readily promoting reductive elimination. Based on this mechanism some guidelines are suggested to control the undesired formation of homocoupling product in Cu-catalyzed cross-coupling reactions.
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3
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Rio J, Perrin L, Payard P. Structure–Reactivity Relationship of Organozinc and Organozincate Reagents: Key Elements towards Molecular Understanding. European J Org Chem 2022. [DOI: 10.1002/ejoc.202200906] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Jordan Rio
- Univ Lyon Université Claude Bernard Lyon I CNRS INSA CPE UMR 5246 ICBMS Institut de Chimie et de Biochimie Moléculaires et Supramoléculaires 1 rue Victor Grignard 69622 Villeurbanne cedex France
| | - Lionel Perrin
- Univ Lyon Université Claude Bernard Lyon I CNRS INSA CPE UMR 5246 ICBMS Institut de Chimie et de Biochimie Moléculaires et Supramoléculaires 1 rue Victor Grignard 69622 Villeurbanne cedex France
| | - Pierre‐Adrien Payard
- Univ Lyon Université Claude Bernard Lyon I CNRS INSA CPE UMR 5246 ICBMS Institut de Chimie et de Biochimie Moléculaires et Supramoléculaires 1 rue Victor Grignard 69622 Villeurbanne cedex France
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4
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Wang Y, Zhou Z, Wang C, Zhao L, Xia Q. Hydrogenolysis of glycerol over TiO2-supported Pt-WOx catalysts: Effects of the TiO2 crystal phase and WOx loading. Front Chem 2022; 10:1004925. [PMID: 36212063 PMCID: PMC9532750 DOI: 10.3389/fchem.2022.1004925] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Accepted: 08/17/2022] [Indexed: 11/15/2022] Open
Abstract
The selective hydrogenolysis of glycerol to 1,3-propanediol (1,3-PDO) with high added value is attraction but challenging. Pt-WOx-based catalysts have been extensively studied in the selective hydrogenolysis of glycerol. The catalyst support and the physicochemical state of WOx play important roles on this reaction. In this paper, Pt-WOx catalysts supported on TiO2 with different crystal forms were prepared and studied for their catalytic performance in hydrogenolysis of glycerol. It was observed that the catalytic performance of anatase-type (A-type) TiO2-supported catalyst (Pt/W/A-Ti) is much better than that of the rutile-type (R-type) TiO2 catalyst (Pt/W/R-Ti) due to its higher stability. Furthermore, the influence of W loading amount and state were thoroughly investigated for the Pt/W/A-Ti catalysts, and Pt/W/A-TiO2 with 5 wt% loading of WOx achieved the best catalytic performance (100% conversion of glycerol and 41% yield of 1,3-PDO under the optimal reaction conditions), owing to the suitable WOx domains and high dispersion of W species, as evidenced by XRD patterns and TEM images. Mechanism study by in-situ DRIFTS experiments indicated that glycerol was first converted to 3-hydroxypropanal and then converted to 1,3-PDO through subsequent reactions.
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Affiliation(s)
- Yaju Wang
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Institute of Physical Chemistry, Zhejiang Normal University, Jinhua, China
- College of Biological, Chemical Science and Engineering, Jiaxing University, Jiaxing, China
| | - Zhiming Zhou
- College of Biological, Chemical Science and Engineering, Jiaxing University, Jiaxing, China
| | - Chao Wang
- College of Chemical Engineering, Qingdao University of Science and Technology, Qingdao, China
- Yankuang Technology Co., Ltd., Shandong Energy Group Co., Ltd., Jinan, China
- *Correspondence: Chao Wang, ; Qineng Xia,
| | - Leihong Zhao
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Institute of Physical Chemistry, Zhejiang Normal University, Jinhua, China
| | - Qineng Xia
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, Institute of Physical Chemistry, Zhejiang Normal University, Jinhua, China
- College of Biological, Chemical Science and Engineering, Jiaxing University, Jiaxing, China
- *Correspondence: Chao Wang, ; Qineng Xia,
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5
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Norjmaa G, Ujaque G, Lledós A. Beyond Continuum Solvent Models in Computational Homogeneous Catalysis. Top Catal 2021. [DOI: 10.1007/s11244-021-01520-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
AbstractIn homogeneous catalysis solvent is an inherent part of the catalytic system. As such, it must be considered in the computational modeling. The most common approach to include solvent effects in quantum mechanical calculations is by means of continuum solvent models. When they are properly used, average solvent effects are efficiently captured, mainly those related with solvent polarity. However, neglecting atomistic description of solvent molecules has its limitations, and continuum solvent models all alone cannot be applied to whatever situation. In many cases, inclusion of explicit solvent molecules in the quantum mechanical description of the system is mandatory. The purpose of this article is to highlight through selected examples what are the reasons that urge to go beyond the continuum models to the employment of micro-solvated (cluster-continuum) of fully explicit solvent models, in this way setting the limits of continuum solvent models in computational homogeneous catalysis. These examples showcase that inclusion of solvent molecules in the calculation not only can improve the description of already known mechanisms but can yield new mechanistic views of a reaction. With the aim of systematizing the use of explicit solvent models, after discussing the success and limitations of continuum solvent models, issues related with solvent coordination and solvent dynamics, solvent effects in reactions involving small, charged species, as well as reactions in protic solvents and the role of solvent as reagent itself are successively considered.
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6
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Gioria E, del Pozo J, Lledós A, Espinet P. Understanding the Use of Phosphine-(EWO) Ligands in Negishi Cross-Coupling: Experimental and Density Functional Theory Mechanistic Study. Organometallics 2021. [DOI: 10.1021/acs.organomet.1c00001] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Estefanía Gioria
- IU CINQUIMA/Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, 47071 Valladolid, Spain
| | - Juan del Pozo
- IU CINQUIMA/Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, 47071 Valladolid, Spain
| | - Agustí Lledós
- Departament de Química, Universitat Autònoma de Barcelona, 08193 Cerdanyola del Vallès, Spain
| | - Pablo Espinet
- IU CINQUIMA/Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, 47071 Valladolid, Spain
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7
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Experimental study of the [ZnCl2(THF)2] catalyzed cis/trans-isomerization of [Pd(C6Cl2F3)Me(PPh3)2] and of the transmetalation of trans-[PdCl(C6Cl2F3)(PPh3)2] with [ZnMeCl(THF)2]. Inorganica Chim Acta 2021. [DOI: 10.1016/j.ica.2020.120206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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8
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Xiong B, Wang T, Sun H, Li Y, Kramer S, Cheng GJ, Lian Z. Nickel-Catalyzed Cross-Electrophile Coupling Reactions for the Synthesis of gem-Difluorovinyl Arenes. ACS Catal 2020. [DOI: 10.1021/acscatal.0c03993] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Baojian Xiong
- Department of Dermatology, State Key Laboratory of Bio-therapy and Cancer Center, West China Hospital and West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Ting Wang
- Warshel Institute for Computational Biology, Shenzhen Key Laboratory of Steroid Drug Development, School of Life and Health Sciences, The Chinese University of Hong Kong (Shenzhen), Shenzhen 518172, China
| | - Haotian Sun
- Department of Dermatology, State Key Laboratory of Bio-therapy and Cancer Center, West China Hospital and West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Yue Li
- Department of Dermatology, State Key Laboratory of Bio-therapy and Cancer Center, West China Hospital and West China School of Pharmacy, Sichuan University, Chengdu 610041, China
| | - Søren Kramer
- Department of Chemistry, Technical University of Denmark, 2800 Kgs. Lyngby, Denmark
| | - Gui-Juan Cheng
- Warshel Institute for Computational Biology, Shenzhen Key Laboratory of Steroid Drug Development, School of Life and Health Sciences, The Chinese University of Hong Kong (Shenzhen), Shenzhen 518172, China
| | - Zhong Lian
- Department of Dermatology, State Key Laboratory of Bio-therapy and Cancer Center, West China Hospital and West China School of Pharmacy, Sichuan University, Chengdu 610041, China
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9
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Hoveyda AH, Zhou Y, Shi Y, Brown MK, Wu H, Torker S. Sulfonate N‐Heterocyclic Carbene–Copper Complexes: Uniquely Effective Catalysts for Enantioselective Synthesis of C−C, C−B, C−H, and C−Si Bonds. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202003755] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Amir H. Hoveyda
- Department of Chemistry Merkert Chemistry Center Boston College Chestnut Hill MA 02467 USA
- Supramolecular Science and Engineering Institute University of Strasbourg CNRS 67000 Strasbourg France
| | - Yuebiao Zhou
- Department of Chemistry Merkert Chemistry Center Boston College Chestnut Hill MA 02467 USA
| | - Ying Shi
- Department of Chemistry Merkert Chemistry Center Boston College Chestnut Hill MA 02467 USA
| | - M. Kevin Brown
- Department of Chemistry Merkert Chemistry Center Boston College Chestnut Hill MA 02467 USA
| | - Hao Wu
- Department of Chemistry Merkert Chemistry Center Boston College Chestnut Hill MA 02467 USA
| | - Sebastian Torker
- Department of Chemistry Merkert Chemistry Center Boston College Chestnut Hill MA 02467 USA
- Supramolecular Science and Engineering Institute University of Strasbourg CNRS 67000 Strasbourg France
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10
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Hoveyda AH, Zhou Y, Shi Y, Brown MK, Wu H, Torker S. Sulfonate N-Heterocyclic Carbene-Copper Complexes: Uniquely Effective Catalysts for Enantioselective Synthesis of C-C, C-B, C-H, and C-Si Bonds. Angew Chem Int Ed Engl 2020; 59:21304-21359. [PMID: 32364640 DOI: 10.1002/anie.202003755] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Indexed: 12/21/2022]
Abstract
A copper-based complex that contains a sulfonate N-heterocyclic carbene ligand was first reported 15 years ago. Since then, these organometallic entities have proven to be uniquely effective in catalyzing an assortment of enantioselective transformations, including allylic substitutions, conjugate additions, proto-boryl additions to alkenes, boryl and silyl substitutions, hydride-allyl additions to alkenyl boronates, and additions of boron-containing allyl moieties to N-H ketimines. In this review article, we detail the shortcomings in the state-of-the-art that fueled the development of this air stable ligand class, members of which can be prepared on multigram scale. For each reaction type, when relevant, the prior art at the time of the advance involving sulfonate NHC-Cu catalysts and/or subsequent key developments are briefly analyzed, and the relevance of the advance to efficient and enantioselective total or formal synthesis of biologically active molecules is underscored. Mechanistic analysis of the structural attributes of sulfonate NHC-Cu catalysts that are responsible for their ability to facilitate transformations with high efficiency as well as regio- and enantioselectivity are detailed. This review contains several formerly undisclosed methodological advances and mechanistic analyses, the latter of which constitute a revision of previously reported proposals.
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Affiliation(s)
- Amir H Hoveyda
- Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, MA, 02467, USA.,Supramolecular Science and Engineering Institute, University of Strasbourg, CNRS, 67000, Strasbourg, France
| | - Yuebiao Zhou
- Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, MA, 02467, USA
| | - Ying Shi
- Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, MA, 02467, USA
| | - M Kevin Brown
- Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, MA, 02467, USA
| | - Hao Wu
- Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, MA, 02467, USA
| | - Sebastian Torker
- Department of Chemistry, Merkert Chemistry Center, Boston College, Chestnut Hill, MA, 02467, USA.,Supramolecular Science and Engineering Institute, University of Strasbourg, CNRS, 67000, Strasbourg, France
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11
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Miloserdov FM, Rajabi NA, Lowe JP, Mahon MF, Macgregor SA, Whittlesey MK. Zn-Promoted C-H Reductive Elimination and H 2 Activation via a Dual Unsaturated Heterobimetallic Ru-Zn Intermediate. J Am Chem Soc 2020; 142:6340-6349. [PMID: 32134645 PMCID: PMC7660749 DOI: 10.1021/jacs.0c01062] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
![]()
Reaction
of [Ru(PPh3)3HCl] with LiCH2TMS,
MgMe2, and ZnMe2 proceeds with
chloride abstraction and alkane elimination to form the bis-cyclometalated
derivatives [Ru(PPh3)(C6H4PPh2)2H][M′] where [M′] = [Li(THF)2]+ (1), [MgMe(THF)2]+ (3), and [ZnMe]+ (4),
respectively. In the presence of 12-crown-4, the reaction with LiCH2TMS yields [Ru(PPh3)(C6H4PPh2)2H][Li(12-crown-4)2] (2). These four complexes demonstrate increasing interaction
between M′ and the hydride ligand in the [Ru(PPh3)(C6H4PPh2)2H]− anion following the trend 2 (no interaction) < 1 < 3 < 4 both in the solid-state
and solution. Zn species 4 is present as three isomers
in solution including square-pyramidal [Ru(PPh3)2(C6H4PPh2)(ZnMe)] (5), that is formed via C–H reductive elimination and features
unsaturated Ru and Zn centers and an axial Z-type [ZnMe]+ ligand. A [ZnMe]+ adduct of 5, [Ru(PPh3)2(C6H4PPh2)(ZnMe)2][BArF4] (6) can be trapped
and structurally characterized. 4 reacts with H2 at −40 °C to form [Ru(PPh3)3(H)3(ZnMe)], 8-Zn, and contrasts the analogous reactions
of 1, 2, and 3 that all require
heating to 60 °C. This marked difference in reactivity reflects
the ability of Zn to promote a rate-limiting C–H reductive
elimination step, and calculations attribute this to a significant
stabilization of 5 via Ru → Zn donation. 4 therefore acts as a latent source of 5 and
this operational “dual unsaturation” highlights the
ability of Zn to promote reductive elimination in these heterobimetallic
systems. Calculations also highlight the ability of the heterobimetallic
systems to stabilize developing protic character of the transferring
hydrogen in the rate-limiting C–H reductive elimination transition
states.
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Affiliation(s)
- Fedor M Miloserdov
- Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, U.K
| | - Nasir A Rajabi
- Institute of Chemical Sciences, Heriot-Watt University, Edinburgh EH14 4AS, U.K
| | - John P Lowe
- Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, U.K
| | - Mary F Mahon
- Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, U.K
| | - Stuart A Macgregor
- Institute of Chemical Sciences, Heriot-Watt University, Edinburgh EH14 4AS, U.K
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12
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Darù A, Hu X, Harvey JN. Iron-Catalyzed Reductive Coupling of Alkyl Iodides with Alkynes To Yield cis-Olefins: Mechanistic Insights from Computation. ACS OMEGA 2020; 5:1586-1594. [PMID: 32010833 PMCID: PMC6990637 DOI: 10.1021/acsomega.9b03578] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/24/2019] [Accepted: 12/03/2019] [Indexed: 05/06/2023]
Abstract
In a recent study, a new procedure for Z-selective olefin synthesis by reductive coupling of alkyl iodides with terminal alkynes in the presence of iron salts is described. This transformation is representative of many newly developed synthetic routes through the involvement of multiple species and phases, which makes mechanistic insight hard to obtain. Here, we report computational work aimed at exploring the possible reaction pathways. DFT calculations lead to two suggested routes, one involving C-I reduction by metallic zinc and radical addition to the alkyne and the other involving addition of two reduced iron species to the alkyne bond followed by reductive elimination. Comparison to experimental results as well as kinetic modeling is used to discuss the likelihood of these and related mechanisms.
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Affiliation(s)
- Andrea Darù
- Department
of Chemistry, Division of Quantum Chemistry and Physical Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Heverlee, Belgium
| | - Xile Hu
- Laboratory
of Inorganic Synthesis and Catalysis, Institute of Chemical Sciences
and Engineering, École Polytechnique
FÉdÉrale de Lausanne (EPFL), ISIC-LSCI, BCH 3305, Lausanne 1015, Switzerland
| | - Jeremy N. Harvey
- Department
of Chemistry, Division of Quantum Chemistry and Physical Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Heverlee, Belgium
- E-mail:
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13
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14
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Slack ED, Seupel R, Aue DH, Bringmann G, Lipshutz BH. Atroposelective Total Synthesis of the Fourfold
ortho
‐Substituted Naphthyltetrahydroisoquinoline Biaryl
O
,
N
‐Dimethylhamatine. Chemistry 2019; 25:14237-14245. [DOI: 10.1002/chem.201903832] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2019] [Indexed: 01/02/2023]
Affiliation(s)
- Eric D. Slack
- Department of Chemistry & Biochemistry University of California Santa Barbara 93106 USA
| | - Raina Seupel
- Institute of Organic Chemistry University of Würzburg 97074 Würzburg Germany
| | - Donald H. Aue
- Department of Chemistry & Biochemistry University of California Santa Barbara 93106 USA
| | - Gerhard Bringmann
- Institute of Organic Chemistry University of Würzburg 97074 Würzburg Germany
| | - Bruce H. Lipshutz
- Department of Chemistry & Biochemistry University of California Santa Barbara 93106 USA
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15
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Lynn MA, Miecznikowski JR, Jasinski JP, Kaur M, Mercado BQ, Reinheimer E, Almanza EM, Kharbouch RM, Smith MR, Zygmont SE, Flaherty NF, Smith AC. Copper(I) SNS pincer complexes: Impact of ligand design and solvent coordination on conformer interconversion from spectroscopic and computational studies. Inorganica Chim Acta 2019. [DOI: 10.1016/j.ica.2019.118996] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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16
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Polynski MV, Ananikov VP. Modeling Key Pathways Proposed for the Formation and Evolution of “Cocktail”-Type Systems in Pd-Catalyzed Reactions Involving ArX Reagents. ACS Catal 2019. [DOI: 10.1021/acscatal.9b00207] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Mikhail V. Polynski
- Department of Chemical Engineering, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
- Faculty of Chemistry, Moscow State University, Leninskiye Gory, Moscow, 119991, Russia
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky prospekt 47, Moscow, 119991, Russia
| | - Valentine P. Ananikov
- Faculty of Chemistry, Moscow State University, Leninskiye Gory, Moscow, 119991, Russia
- Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, Leninsky prospekt 47, Moscow, 119991, Russia
- Saint Petersburg State University, Universitetsky Prospect, 26, St. Petersburg 198504, Russia
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17
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Vogiatzis KD, Polynski MV, Kirkland JK, Townsend J, Hashemi A, Liu C, Pidko EA. Computational Approach to Molecular Catalysis by 3d Transition Metals: Challenges and Opportunities. Chem Rev 2019; 119:2453-2523. [PMID: 30376310 PMCID: PMC6396130 DOI: 10.1021/acs.chemrev.8b00361] [Citation(s) in RCA: 214] [Impact Index Per Article: 42.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2018] [Indexed: 12/28/2022]
Abstract
Computational chemistry provides a versatile toolbox for studying mechanistic details of catalytic reactions and holds promise to deliver practical strategies to enable the rational in silico catalyst design. The versatile reactivity and nontrivial electronic structure effects, common for systems based on 3d transition metals, introduce additional complexity that may represent a particular challenge to the standard computational strategies. In this review, we discuss the challenges and capabilities of modern electronic structure methods for studying the reaction mechanisms promoted by 3d transition metal molecular catalysts. Particular focus will be placed on the ways of addressing the multiconfigurational problem in electronic structure calculations and the role of expert bias in the practical utilization of the available methods. The development of density functionals designed to address transition metals is also discussed. Special emphasis is placed on the methods that account for solvation effects and the multicomponent nature of practical catalytic systems. This is followed by an overview of recent computational studies addressing the mechanistic complexity of catalytic processes by molecular catalysts based on 3d metals. Cases that involve noninnocent ligands, multicomponent reaction systems, metal-ligand and metal-metal cooperativity, as well as modeling complex catalytic systems such as metal-organic frameworks are presented. Conventionally, computational studies on catalytic mechanisms are heavily dependent on the chemical intuition and expert input of the researcher. Recent developments in advanced automated methods for reaction path analysis hold promise for eliminating such human-bias from computational catalysis studies. A brief overview of these approaches is presented in the final section of the review. The paper is closed with general concluding remarks.
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Affiliation(s)
| | | | - Justin K. Kirkland
- Department
of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Jacob Townsend
- Department
of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Ali Hashemi
- Inorganic
Systems Engineering group, Department of Chemical Engineering, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Chong Liu
- Inorganic
Systems Engineering group, Department of Chemical Engineering, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
| | - Evgeny A. Pidko
- TheoMAT
group, ITMO University, Lomonosova 9, St. Petersburg 191002, Russia
- Inorganic
Systems Engineering group, Department of Chemical Engineering, Delft University of Technology, Van der Maasweg 9, 2629 HZ Delft, The Netherlands
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18
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Polynski MV, Pidko EA. Intermetallic species in the Negishi coupling and their involvement in inhibition pathways. Catal Sci Technol 2019. [DOI: 10.1039/c9cy00752k] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The formation of M–Zn-intermetallic species (M = Ni, Pd) in the course of the Negishi reaction in THF solvent and their potential impact on in situ catalyst inhibition were investigated by DFT calculations carried out at two levels of theory.
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Affiliation(s)
- Mikhail V. Polynski
- TheoMAT Group
- ITMO University
- St. Petersburg
- Russia
- Zelinsky Institute of Organic Chemistry
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19
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Lingua H, Dwadnia N, Siri D, Bertrand MP, Feray L. Reactivity of benzylidene and alkylidenemalonates in radical addition mediated with dialkylzincs – An intriguing story. Tetrahedron 2018. [DOI: 10.1016/j.tet.2018.11.029] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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20
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Besora M, Vidossich P, Lledós A, Ujaque G, Maseras F. Calculation of Reaction Free Energies in Solution: A Comparison of Current Approaches. J Phys Chem A 2018; 122:1392-1399. [DOI: 10.1021/acs.jpca.7b11580] [Citation(s) in RCA: 84] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Maria Besora
- Institute
of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology, Avinguda Països Catalans 16, 43007 Tarragona, Catalonia, Spain
| | - Pietro Vidossich
- Departament
de Química, Universitat Autònoma de Barcelona, 08193 Cerdanyola
del Valles, Catalonia, Spain
- COBO
Computational Bio-Organic Chemistry Bogotá, Department of Chemistry, Universidad de los Andes, Carrera 1 No. 18A 10, 111711 Bogotá, Colombia
| | - Agustí Lledós
- Departament
de Química, Universitat Autònoma de Barcelona, 08193 Cerdanyola
del Valles, Catalonia, Spain
| | - Gregori Ujaque
- Departament
de Química, Universitat Autònoma de Barcelona, 08193 Cerdanyola
del Valles, Catalonia, Spain
| | - Feliu Maseras
- Institute
of Chemical Research of Catalonia (ICIQ), The Barcelona Institute of Science and Technology, Avinguda Països Catalans 16, 43007 Tarragona, Catalonia, Spain
- Departament
de Química, Universitat Autònoma de Barcelona, 08193 Cerdanyola
del Valles, Catalonia, Spain
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21
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Neves-Garcia T, Vélez A, Martínez-Ilarduya JM, Espinet P. Highly enantioselective addition of dimethylzinc to fluorinated alkyl ketones, and the mechanism behind it. Chem Commun (Camb) 2018; 54:11809-11812. [DOI: 10.1039/c8cc06358c] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Switching the solvent from toluene to dichloromethane results in a very important enhancement in the yield and enantiomeric excess of nucleophilic addition.
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Affiliation(s)
- Tomaz Neves-Garcia
- IU CINQUIMA/Química Inorgánica
- Facultad de Ciencias
- Universidad de Valladolid
- 47071-Valladolid
- Spain
| | - Andrea Vélez
- IU CINQUIMA/Química Inorgánica
- Facultad de Ciencias
- Universidad de Valladolid
- 47071-Valladolid
- Spain
| | | | - Pablo Espinet
- IU CINQUIMA/Química Inorgánica
- Facultad de Ciencias
- Universidad de Valladolid
- 47071-Valladolid
- Spain
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22
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Liu Y, Cerveri A, De Nisi A, Monari M, Nieto Faza O, Lopez CS, Bandini M. Nickel catalyzed regio- and stereoselective arylation and methylation of allenamides via coupling reactions. An experimental and computational study. Org Chem Front 2018. [DOI: 10.1039/c8qo00729b] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
A novel Ni-catalyzed regio- and stereoselective condensation of boronic acids/Me2Zn to allenamides is documented and its potential explored.
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Affiliation(s)
- Yang Liu
- Dipartimento di Chimica “G. Ciamician”
- Alma Mater Studiorum – Università di Bologna
- 40126 Bologna
- Italy
| | - Alessandro Cerveri
- Dipartimento di Chimica “G. Ciamician”
- Alma Mater Studiorum – Università di Bologna
- 40126 Bologna
- Italy
| | - Assunta De Nisi
- Dipartimento di Chimica “G. Ciamician”
- Alma Mater Studiorum – Università di Bologna
- 40126 Bologna
- Italy
| | - Magda Monari
- Dipartimento di Chimica “G. Ciamician”
- Alma Mater Studiorum – Università di Bologna
- 40126 Bologna
- Italy
| | | | | | - Marco Bandini
- Dipartimento di Chimica “G. Ciamician”
- Alma Mater Studiorum – Università di Bologna
- 40126 Bologna
- Italy
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23
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Rejc L, Gómez-Vallejo V, Alcázar J, Alonso N, Andrés JI, Arrieta A, Cossío FP, Llop J. Negishi coupling reactions with [11C]CH3I: a versatile method for efficient 11C–C bond formation. Chem Commun (Camb) 2018; 54:4398-4401. [DOI: 10.1039/c8cc01540f] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
11C–C bonds can be rapidly formed by one-pot Negishi coupling between in situ-formed [11C]CH3ZnI and halides or triflates.
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Affiliation(s)
- Luka Rejc
- Radiochemistry and Nuclear Imaging
- CIC biomaGUNE
- 20014 San Sebastián
- Spain
| | | | - Jesús Alcázar
- Lead Discovery Chemistry–Discovery Sciences
- Janssen Research & Development
- 45007 Toledo
- Spain
| | - Nerea Alonso
- Lead Discovery Chemistry–Discovery Sciences
- Janssen Research & Development
- 45007 Toledo
- Spain
| | - José Ignacio Andrés
- Lead Discovery Chemistry–Discovery Sciences
- Janssen Research & Development
- 45007 Toledo
- Spain
| | - Ana Arrieta
- Department of Organic Chemistry I
- ORFEO-CINQA
- Universidad del País Vasco/Euskal Herriko Unibertsitatea UPV/EHU
- Donostia International Physics Center (DIPC)
- 20018 San Sebastián/Donostia
| | - Fernando P. Cossío
- Department of Organic Chemistry I
- ORFEO-CINQA
- Universidad del País Vasco/Euskal Herriko Unibertsitatea UPV/EHU
- Donostia International Physics Center (DIPC)
- 20018 San Sebastián/Donostia
| | - Jordi Llop
- Radiochemistry and Nuclear Imaging
- CIC biomaGUNE
- 20014 San Sebastián
- Spain
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24
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Computational Study of the Cu-Free Allylic Alkylation Mechanism with Grignard Reagents: Role of the NHC Ligand. European J Org Chem 2017. [DOI: 10.1002/ejoc.201701010] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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25
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Campos J, Nova A, Kolychev EL, Aldridge S. A Combined Experimental/Computational Study of the Mechanism of a Palladium-Catalyzed Bora-Negishi Reaction. Chemistry 2017; 23:12655-12667. [DOI: 10.1002/chem.201702703] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2017] [Indexed: 12/11/2022]
Affiliation(s)
- Jesús Campos
- Inorganic Chemistry Laboratory; South Parks Road Oxford OX1 3QR UK
- Instituto de Investigaciones Químicas (IIQ); Departamento de Química Inorgánica and Centro de Innovación en Química Avanzada (ORFEO-CINQA); Universidad de Sevilla and Consejo Superior de Investigaciones Científicas (CSIC).; Avenida Américo Vespucio 49 41092 Sevilla Spain
| | - Ainara Nova
- Centre for Theoretical and Computational Chemistry (CTCC); Department of Chemistry; University of Oslo, P. O. Box 1033 Blindern; 0315 Oslo Norway
| | | | - Simon Aldridge
- Inorganic Chemistry Laboratory; South Parks Road Oxford OX1 3QR UK
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26
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Affiliation(s)
- Michael Busch
- Laboratory for Computational Molecular Design and National Center for Computational Design and Discovery of Novel Materials (MARVEL), Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Matthew D. Wodrich
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Clémence Corminboeuf
- Laboratory for Computational Molecular Design and National Center for Computational Design and Discovery of Novel Materials (MARVEL), Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, Ecole Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
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