1
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Noël N, Duchateau S, Messire G, Massicot F, Vasse JL, Villaume S, Aziz A, Dorey S, Crouzet J, Behr JB. Protecting-group free synthesis of glycoconjugates displaying dual fungicidal and plant defense-eliciting activities. Bioorg Chem 2023; 141:106829. [PMID: 37690319 DOI: 10.1016/j.bioorg.2023.106829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Revised: 08/24/2023] [Accepted: 08/30/2023] [Indexed: 09/12/2023]
Abstract
A straightforward synthesis of carbohydrate templated isoxazolidines is described, by reaction of unprotected glycosylhydroxylamines (operating as 1,3-dipoles) with methyl acrylate using microwave activation. Rhamno- and erythro-isoxazolidines are recognized by plant cells, resulting in a strong ROS-production as a plant immune response, and exert a high antifungal activity against Botrytis cinerea.
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Affiliation(s)
- Nathan Noël
- Université de Reims Champagne-Ardenne, Institut de Chimie Moléculaire de Reims, CNRS UMR 7312, 51687 Reims, France
| | - Simon Duchateau
- Université de Reims Champagne Ardenne, RIBP-USC INRAE 1488, 51100 Reims, France
| | - Gatien Messire
- Université de Reims Champagne-Ardenne, Institut de Chimie Moléculaire de Reims, CNRS UMR 7312, 51687 Reims, France
| | - Fabien Massicot
- Université de Reims Champagne-Ardenne, Institut de Chimie Moléculaire de Reims, CNRS UMR 7312, 51687 Reims, France
| | - Jean-Luc Vasse
- Université de Reims Champagne-Ardenne, Institut de Chimie Moléculaire de Reims, CNRS UMR 7312, 51687 Reims, France
| | - Sandra Villaume
- Université de Reims Champagne Ardenne, RIBP-USC INRAE 1488, 51100 Reims, France
| | - Aziz Aziz
- Université de Reims Champagne Ardenne, RIBP-USC INRAE 1488, 51100 Reims, France
| | - Stéphan Dorey
- Université de Reims Champagne Ardenne, RIBP-USC INRAE 1488, 51100 Reims, France
| | - Jérôme Crouzet
- Université de Reims Champagne Ardenne, RIBP-USC INRAE 1488, 51100 Reims, France.
| | - Jean-Bernard Behr
- Université de Reims Champagne-Ardenne, Institut de Chimie Moléculaire de Reims, CNRS UMR 7312, 51687 Reims, France.
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2
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Co-Immobilization of D-Amino Acid Oxidase, Catalase, and Transketolase for One-Pot, Two-Step Synthesis of L-Erythrulose. Catalysts 2023. [DOI: 10.3390/catal13010095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
Here, we present an immobilized enzyme cascade in a basket-type reactor allowing a one-pot, two-step enzymatic synthesis of L-erythrulose from D-serine and glycolaldehyde. Three enzymes, D-amino acid oxidase from Rhodotorula gracilis (DAAORg), catalase from bovine liver (CAT), and transketolase from Geobacillus stearothermophilus (TKgst) were covalently immobilized on silica monolithic pellets, characterized by an open structure of interconnected macropores and a specific surface area of up to 300 m2/g. Three strategies were considered: (i) separate immobilization of enzymes on silica supports ([DAAO][CAT][TK]), (ii) co-immobilization of two of the three enzymes followed by the third ([DAAO+CAT][TK]), and (iii) co-immobilization of all three enzymes ([DAAO+CAT+TK]). The highest L-erythrulose concentrations were observed for the co-immobilization protocols (ii) and (iii) (30.7 mM and 29.1 mM, respectively). The reusability study showed that the best combination was [DAAO + CAT][TK], which led to the same level of L-erythrulose formation after two reuse cycles. The described process paves the way for the effective synthesis of a wide range of α-hydroxyketones from D-serine and suitable aldehydes.
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3
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Casajus H, Lagarde A, Nauton L, Ocal N, Leremboure M, Fessner WD, Duguet N, Charmantray F, Hecquet L. Cleavage of Aliphatic α-Hydroxy Ketones by Evolved Transketolase from Geobacillus stearothermophilus. ACS Catal 2022. [DOI: 10.1021/acscatal.1c05140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Hubert Casajus
- Université Clermont Auvergne, CNRS, Clermont INP, Institut de Chimie de Clermont-Ferrand (ICCF), F-63000 Clermont-Ferrand, France
| | - Aurélie Lagarde
- Université Clermont Auvergne, CNRS, Clermont INP, Institut de Chimie de Clermont-Ferrand (ICCF), F-63000 Clermont-Ferrand, France
| | - Lionel Nauton
- Université Clermont Auvergne, CNRS, Clermont INP, Institut de Chimie de Clermont-Ferrand (ICCF), F-63000 Clermont-Ferrand, France
| | - Nazim Ocal
- Université Clermont Auvergne, CNRS, Clermont INP, Institut de Chimie de Clermont-Ferrand (ICCF), F-63000 Clermont-Ferrand, France
| | - Martin Leremboure
- Université Clermont Auvergne, CNRS, Clermont INP, Institut de Chimie de Clermont-Ferrand (ICCF), F-63000 Clermont-Ferrand, France
| | - Wolf-Dieter Fessner
- Institut für Organische Chemie und Biochemie, Technische Universität Darmstadt, Alarich-Weiss-Strasse 4, 64287 Darmstadt, Germany
| | - Nicolas Duguet
- Univ Lyon, Université Claude-Bernard Lyon 1, CNRS, INSA-Lyon, CPE-Lyon, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS), F-69100 Villeurbanne, France
| | - Franck Charmantray
- Université Clermont Auvergne, CNRS, Clermont INP, Institut de Chimie de Clermont-Ferrand (ICCF), F-63000 Clermont-Ferrand, France
| | - Laurence Hecquet
- Université Clermont Auvergne, CNRS, Clermont INP, Institut de Chimie de Clermont-Ferrand (ICCF), F-63000 Clermont-Ferrand, France
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4
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Fúster Fernández I, Hecquet L, Fessner W. Transketolase Catalyzed Synthesis of
N
‐Aryl Hydroxamic Acids. Adv Synth Catal 2021. [DOI: 10.1002/adsc.202101100] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Inés Fúster Fernández
- Institut für Organische Chemie und Biochemie Technische Universität Darmstadt Alarich-Weiss-Str. 4 64287 Darmstadt Germany
| | - Laurence Hecquet
- Institut de Chimie de Clermont-Ferrand CNRS Auvergne Clermont INP Université Clermont Auverne 63000 Clermont-Ferrand France
| | - Wolf‐Dieter Fessner
- Institut für Organische Chemie und Biochemie Technische Universität Darmstadt Alarich-Weiss-Str. 4 64287 Darmstadt Germany
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5
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Ocal N, Lagarde A, L'enfant M, Charmantray F, Hecquet L. High-Throughput Solid-Phase Assay for Substrate Profiling and Directed Evolution of Transketolase. Chembiochem 2021; 22:2814-2820. [PMID: 34289225 DOI: 10.1002/cbic.202100356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Indexed: 11/10/2022]
Abstract
Thiamine diphosphate-dependent enzymes, and specifically transketolases, form one of the most important families of biocatalytic tools for enantioselective carbon-carbon bond formation yielding various hydroxyketones of biological interest. To enable substrate profiling of transketolases for acceptance of different donors and acceptors, a simple, direct colorimetric assay based on pH reaction variation was developed to establish a high-throughput solid-phase assay. This assay reduces the screening effort in the directed evolution of transketolases, as only active variants are selected for further analysis. Transketolase activity is detected as bicarbonate anions released from the α-ketoacid donor substrate, which causes the pH to rise. A pH indicator, bromothymol blue, which changes color from yellow to blue in alkaline conditions, was used to directly detect, with the naked eye, clones expressing active transketolase variants, obviating enzyme extraction.
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Affiliation(s)
- Nazim Ocal
- Université Clermont Auvergne, CNRS, Auvergne Clermont INP, ICCF, 63000, Clermont-Ferrand, France
| | - Aurélie Lagarde
- Université Clermont Auvergne, CNRS, Auvergne Clermont INP, ICCF, 63000, Clermont-Ferrand, France
| | - Mélanie L'enfant
- Université Clermont Auvergne, CNRS, Auvergne Clermont INP, ICCF, 63000, Clermont-Ferrand, France
| | - Franck Charmantray
- Université Clermont Auvergne, CNRS, Auvergne Clermont INP, ICCF, 63000, Clermont-Ferrand, France
| | - Laurence Hecquet
- Université Clermont Auvergne, CNRS, Auvergne Clermont INP, ICCF, 63000, Clermont-Ferrand, France
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6
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Nauton L, Hecquet L, Théry V. QM/MM Study of Human Transketolase: Thiamine Diphosphate Activation Mechanism and Complete Catalytic Cycle. J Chem Inf Model 2021; 61:3502-3515. [PMID: 34161071 DOI: 10.1021/acs.jcim.1c00190] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A computational model for human transketolase was proposed, showing that thiamine diphosphate activation was based on His110 in place of His481 reported in yeast transketolase. In addition, a complete catalytic reaction pathway was investigated using d-xylulose-5-phosphate and d-ribose-5-phosphate as substrates, showing at every step a perfect superimposition of our model with high-resolution crystallographic structures 3MOS, 4KXV, and 4KXX. This study shows that H2N4' of the active thiamine diphosphate "V form" no longer has a self-activating role but allows self-stabilization of the cofactor and of the Breslow intermediate. These advances in our knowledge of the human transketolase mechanism offer interesting prospects for the design of new drugs, this enzyme being involved in several diseases, and for a better understanding of the reactions catalyzed by transketolases from other sources.
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Affiliation(s)
- Lionel Nauton
- Université Clermont Auvergne, CNRS, Clermont Auvergne INP, ICCF, F-63000 Clermont-Ferrand, France
| | - Laurence Hecquet
- Université Clermont Auvergne, CNRS, Clermont Auvergne INP, ICCF, F-63000 Clermont-Ferrand, France
| | - Vincent Théry
- Université Clermont Auvergne, CNRS, Clermont Auvergne INP, ICCF, F-63000 Clermont-Ferrand, France
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7
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Abstract
Cascade reactions have been described as efficient and universal tools, and are of substantial interest in synthetic organic chemistry. This review article provides an overview of the novel and recent achievements in enzyme cascade processes catalyzed by multi-enzymatic or chemoenzymatic systems. The examples here selected collect the advances related to the application of the sequential use of enzymes in natural or genetically modified combination; second, the important combination of enzymes and metal complex systems, and finally we described the application of biocatalytic biohybrid systems on in situ catalytic solid-phase as a novel strategy. Examples of efficient and interesting enzymatic catalytic cascade processes in organic chemistry, in the production of important industrial products, such as the designing of novel biosensors or bio-chemocatalytic systems for medicinal chemistry application, are discussed
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8
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Casajus H, Lagarde A, Leremboure M, De Dios Miguel T, Nauton L, Thery V, Fessner W, Duguet N, Charmantray F, Hecquet L. Enzymatic Synthesis of Aliphatic Acyloins Catalyzed by Thermostable Transketolase. ChemCatChem 2020. [DOI: 10.1002/cctc.202001160] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Hubert Casajus
- Université Clermont Auvergne, CNRS, SIGMA Clermont Institut de Chimie de Clermont-Ferrand (ICCF) F-63000 Clermont-Ferrand France
| | - Aurélie Lagarde
- Université Clermont Auvergne, CNRS, SIGMA Clermont Institut de Chimie de Clermont-Ferrand (ICCF) F-63000 Clermont-Ferrand France
| | - Martin Leremboure
- Université Clermont Auvergne, CNRS, SIGMA Clermont Institut de Chimie de Clermont-Ferrand (ICCF) F-63000 Clermont-Ferrand France
| | - Thomas De Dios Miguel
- Univ Lyon, Université Claude Bernard Lyon 1 CNRS, INSA-Lyon, CPE-Lyon, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS) F-69100 Villeurbanne France
| | - Lionel Nauton
- Université Clermont Auvergne, CNRS, SIGMA Clermont Institut de Chimie de Clermont-Ferrand (ICCF) F-63000 Clermont-Ferrand France
| | - Vincent Thery
- Université Clermont Auvergne, CNRS, SIGMA Clermont Institut de Chimie de Clermont-Ferrand (ICCF) F-63000 Clermont-Ferrand France
| | - Wolf‐Dieter Fessner
- Institut für Organische Chemie und Biochemie Technische Universität Darmstadt 64287 Darmstadt Germany
| | - Nicolas Duguet
- Univ Lyon, Université Claude Bernard Lyon 1 CNRS, INSA-Lyon, CPE-Lyon, Institut de Chimie et Biochimie Moléculaires et Supramoléculaires (ICBMS) F-69100 Villeurbanne France
| | - Franck Charmantray
- Université Clermont Auvergne, CNRS, SIGMA Clermont Institut de Chimie de Clermont-Ferrand (ICCF) F-63000 Clermont-Ferrand France
| | - Laurence Hecquet
- Université Clermont Auvergne, CNRS, SIGMA Clermont Institut de Chimie de Clermont-Ferrand (ICCF) F-63000 Clermont-Ferrand France
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9
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Messire G, Massicot F, Pascual L, Riguet E, Vasse JL, Behr JB. Broadening the reaction scope of unprotected aldoses via their corresponding nitrones: 1,3-dipolar cycloadditions with alkenes. Org Biomol Chem 2020; 18:5708-5725. [PMID: 32666987 DOI: 10.1039/d0ob01350a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Condensation reactions of unprotected tetroses and pentoses with hydroxylamines afforded nitrones, which were easily converted to densely functionalized isoxazolidines in the presence of electron-poor alkenes. The 1,3-dipolar cycloaddition occurred with good facial discrimination of the chiral nitrone but under rather low endo/exo control. Stereochemistry of isomers was ascertained by chemical correlation with known derivatives from the literature. Microwave activation appeared as the most efficient reaction mode, affording the expected adducts within several minutes whereas hours were needed under standard heating. Alternatively, the transformation proved also possible under high pressure conditions by using a hand pump system, avoiding any energy source. Although water could not be used as the solvent, leading to hydrolysis of the nitrone substrate, a large variety of organic solvents proved efficient. The method has potential use in the preparation of non-ionic carbohydrate-based amphiphiles.
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Affiliation(s)
- Gatien Messire
- Univ. Reims Champagne-Ardenne, ICMR, CNRS UMR 7312, FR Condorcet CNRS 3417, 51687 Reims Cedex 2, France.
| | - Fabien Massicot
- Univ. Reims Champagne-Ardenne, ICMR, CNRS UMR 7312, FR Condorcet CNRS 3417, 51687 Reims Cedex 2, France.
| | - Laura Pascual
- Univ. Reims Champagne-Ardenne, ICMR, CNRS UMR 7312, FR Condorcet CNRS 3417, 51687 Reims Cedex 2, France.
| | - Emmanuel Riguet
- Univ. Reims Champagne-Ardenne, ICMR, CNRS UMR 7312, FR Condorcet CNRS 3417, 51687 Reims Cedex 2, France.
| | - Jean-Luc Vasse
- Univ. Reims Champagne-Ardenne, ICMR, CNRS UMR 7312, FR Condorcet CNRS 3417, 51687 Reims Cedex 2, France.
| | - Jean-Bernard Behr
- Univ. Reims Champagne-Ardenne, ICMR, CNRS UMR 7312, FR Condorcet CNRS 3417, 51687 Reims Cedex 2, France.
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10
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Ocal N, L’enfant M, Charmantray F, Pollegioni L, Martin J, Auffray P, Collin J, Hecquet L. d-Serine as a Key Building Block: Enzymatic Process Development and Smart Applications within the Cascade Enzymatic Concept. Org Process Res Dev 2020. [DOI: 10.1021/acs.oprd.0c00024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nazim Ocal
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut de Chimie de Clermont-Ferrand (ICCF), F-63000 Clermont-Ferrand, France
| | - Mélanie L’enfant
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut de Chimie de Clermont-Ferrand (ICCF), F-63000 Clermont-Ferrand, France
| | - Franck Charmantray
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut de Chimie de Clermont-Ferrand (ICCF), F-63000 Clermont-Ferrand, France
| | - Loredano Pollegioni
- Department of Biotechnology and Life Sciences, Università degli Studi dell’Insubria, 21100 Varese, Italy
| | - Juliette Martin
- Protéus by Seqens, 70 Allée Graham Belln, F-30035 Nîmes, France
| | - Pascal Auffray
- Protéus by Seqens, 70 Allée Graham Belln, F-30035 Nîmes, France
| | - Jérôme Collin
- Protéus by Seqens, 70 Allée Graham Belln, F-30035 Nîmes, France
| | - Laurence Hecquet
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut de Chimie de Clermont-Ferrand (ICCF), F-63000 Clermont-Ferrand, France
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11
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Lorillière M, Guérard‐Hélaine C, Gefflaut T, Fessner W, Clapés P, Charmantray F, Hecquet L. Convergent
in situ
Generation of Both Transketolase Substrates
via
Transaminase and Aldolase Reactions for Sequential One‐Pot, Three‐Step Cascade Synthesis of Ketoses. ChemCatChem 2019. [DOI: 10.1002/cctc.201901756] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Marion Lorillière
- Université Clermont Auvergne, CNRS, SIGMA ClermontInstitut de Chimie de Clermont-Ferrand (ICCF) Clermont-Ferrand F63000 France
| | - Christine Guérard‐Hélaine
- Université Clermont Auvergne, CNRS, SIGMA ClermontInstitut de Chimie de Clermont-Ferrand (ICCF) Clermont-Ferrand F63000 France
| | - Thierry Gefflaut
- Université Clermont Auvergne, CNRS, SIGMA ClermontInstitut de Chimie de Clermont-Ferrand (ICCF) Clermont-Ferrand F63000 France
| | - Wolf‐Dieter Fessner
- Institut für Organische Chemie und BiochemieTechnische Universität Darmstadt Darmstadt 64287 Germany
| | - Pere Clapés
- Biotransformation and Bioactive Molecules GroupInstituto de Química Avanzada de Cataluña IQAC-CSIC Jordi Barcelona 08034 Spain
| | - Franck Charmantray
- Université Clermont Auvergne, CNRS, SIGMA ClermontInstitut de Chimie de Clermont-Ferrand (ICCF) Clermont-Ferrand F63000 France
| | - Laurence Hecquet
- Université Clermont Auvergne, CNRS, SIGMA ClermontInstitut de Chimie de Clermont-Ferrand (ICCF) Clermont-Ferrand F63000 France
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12
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Marsden SR, Mestrom L, McMillan DGG, Hanefeld U. Thermodynamically and Kinetically Controlled Reactions in Biocatalysis – from Concepts to Perspectives. ChemCatChem 2019. [DOI: 10.1002/cctc.201901589] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Stefan R. Marsden
- Biokatalyse, Afdeling BiotechnologieTechnische Universiteit Delft Van der Maasweg 9 Delft 2629HZ The Netherlands
| | - Luuk Mestrom
- Biokatalyse, Afdeling BiotechnologieTechnische Universiteit Delft Van der Maasweg 9 Delft 2629HZ The Netherlands
| | - Duncan G. G. McMillan
- Biokatalyse, Afdeling BiotechnologieTechnische Universiteit Delft Van der Maasweg 9 Delft 2629HZ The Netherlands
| | - Ulf Hanefeld
- Biokatalyse, Afdeling BiotechnologieTechnische Universiteit Delft Van der Maasweg 9 Delft 2629HZ The Netherlands
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