1
|
Kawasaki M, Motoyama T, Yamada S, Watanabe M, Fujihara M, Kambe A, Nakano S, Kakuta H, Ito S. Ligand Screening System for the RXRα Heterodimer Using the Fluorescence RXR Agonist CU-6PMN. ACS Med Chem Lett 2023; 14:291-296. [PMID: 36923911 PMCID: PMC10009790 DOI: 10.1021/acsmedchemlett.2c00509] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2022] [Accepted: 02/15/2023] [Indexed: 02/22/2023] Open
Abstract
Retinoid X receptor (RXR), a nuclear receptor (NR) that regulates transcription of target genes in a ligand binding-dependent manner, is of interest as a drug target. RXR agonists have been developed as therapeutic agents for cutaneous invasive T-cell lymphoma (e.g., bexarotene (1)) and investigated as potential anti-inflammatory agents. Screening systems for the binding of RXR alone have been reported. However, although RXRs function as RXR heterodimers, information on systems to evaluate the differential binding of RXR agonists as RXR heterodimers has not been available until recently. Here we show that the fluorescent RXR agonist CU-6PMN (3), designed by our group, can be useful for assessing RXR binding to PPARγ/RXRα, and that the binding data differ from those of RXRα alone. This screening method opens a new avenue for binding assays for RXR heterodimers.
Collapse
Affiliation(s)
- Mayu Kawasaki
- Graduate
School of Integrated Pharmaceutical and Nutritional Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
| | - Tomoharu Motoyama
- Graduate
School of Integrated Pharmaceutical and Nutritional Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
| | - Shoya Yamada
- Division
of Pharmaceutical Sciences, Okayama University
Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 1-1-1, Tsushima-naka, Kita-ku, Okayama 700-8530, Japan
| | - Masaki Watanabe
- Division
of Pharmaceutical Sciences, Okayama University
Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 1-1-1, Tsushima-naka, Kita-ku, Okayama 700-8530, Japan
| | - Michiko Fujihara
- Division
of Pharmaceutical Sciences, Okayama University
Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 1-1-1, Tsushima-naka, Kita-ku, Okayama 700-8530, Japan
| | - Akira Kambe
- Graduate
School of Integrated Pharmaceutical and Nutritional Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
| | - Shogo Nakano
- Graduate
School of Integrated Pharmaceutical and Nutritional Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
- PREST,
Japan Science and Technology Agency, Saitama 332-0012, Japan
| | - Hiroki Kakuta
- Division
of Pharmaceutical Sciences, Okayama University
Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 1-1-1, Tsushima-naka, Kita-ku, Okayama 700-8530, Japan
| | - Sohei Ito
- Graduate
School of Integrated Pharmaceutical and Nutritional Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
| |
Collapse
|
2
|
Kodama S, Matsumoto S, Takamura Y, Fujihara M, Watanabe M, Ono A, Kakuta H. Structural characterization of 1,3-bis-tert-butyl monocyclic benzene derivatives with agonistic activity towards retinoid X receptor alpha. Toxicol Lett 2022; 373:76-83. [PMID: 36368620 DOI: 10.1016/j.toxlet.2022.11.003] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 10/11/2022] [Accepted: 11/07/2022] [Indexed: 11/11/2022]
Abstract
Retinoid X receptor alpha (RXRα) plays pivotal roles in multiple biological processes, but limited information is available on the structural features of chemicals that show low affinity for RXRα, but nevertheless cause significant activation, though these may represent a human health hazard. We recently discovered that several industrial chemicals having 1,3-bis-tert-butylbenzene as a common chemical structure exhibit agonistic activity towards rat RXRα. In this study, we explored the structure-activity relationship of 1,3-bis-tert-butyl monocyclic benzene derivatives for RXRα activation by means of in vitro and in silico analyses. The results indicate that a bulky substituent at the 5-position is favorable for agonistic activity towards human RXRα. Since 1,3-bis-tert-butyl monocyclic benzene derivatives with bulky hydrophobic moieties differ structurally from known RXRα ligands such as 9-cis-retinoic acid and bexarotene, our findings may be helpful for the development of structural alerts in the safety evaluation of industrial chemicals for RXRα-based toxicity to living organisms.
Collapse
Affiliation(s)
- Susumu Kodama
- Division of Pharmaceutical Sciences, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, 1-1-1, Tsushimanaka, Kita-ku, Okayama 700-8530, Japan.
| | - Shuzo Matsumoto
- Division of Pharmaceutical Sciences, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, 1-1-1, Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| | - Yuta Takamura
- Division of Pharmaceutical Sciences, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, 1-1-1, Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| | - Michiko Fujihara
- Division of Pharmaceutical Sciences, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, 1-1-1, Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| | - Masaki Watanabe
- Division of Pharmaceutical Sciences, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, 1-1-1, Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| | - Atsushi Ono
- Division of Pharmaceutical Sciences, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, 1-1-1, Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| | - Hiroki Kakuta
- Division of Pharmaceutical Sciences, Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama University, 1-1-1, Tsushimanaka, Kita-ku, Okayama 700-8530, Japan
| |
Collapse
|
3
|
Khazan N, Kim KK, Hansen JN, Singh NA, Moore T, Snyder CWA, Pandita R, Strawderman M, Fujihara M, Takamura Y, Jian Y, Battaglia N, Yano N, Teramoto Y, Arnold LA, Hopson R, Kishor K, Nayak S, Ojha D, Sharon A, Ashton JM, Wang J, Milano MT, Miyamoto H, Linehan DC, Gerber SA, Kawar N, Singh AP, Tabdanov ED, Dokholyan NV, Kakuta H, Jurutka PW, Schor NF, Rowswell-Turner RB, Singh RK, Moore RG. Identification of a Vitamin-D Receptor Antagonist, MeTC7, which Inhibits the Growth of Xenograft and Transgenic Tumors In Vivo. J Med Chem 2022; 65:6039-6055. [PMID: 35404047 PMCID: PMC9059124 DOI: 10.1021/acs.jmedchem.1c01878] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Indexed: 12/02/2022]
Abstract
Vitamin-D receptor (VDR) mRNA is overexpressed in neuroblastoma and carcinomas of lung, pancreas, and ovaries and predicts poor prognoses. VDR antagonists may be able to inhibit tumors that overexpress VDR. However, the current antagonists are arduous to synthesize and are only partial antagonists, limiting their use. Here, we show that the VDR antagonist MeTC7 (5), which can be synthesized from 7-dehydrocholesterol (6) in two steps, inhibits VDR selectively, suppresses the viability of cancer cell-lines, and reduces the growth of the spontaneous transgenic TH-MYCN neuroblastoma and xenografts in vivo. The VDR selectivity of 5 against RXRα and PPAR-γ was confirmed, and docking studies using VDR-LBD indicated that 5 induces major changes in the binding motifs, which potentially result in VDR antagonistic effects. These data highlight the therapeutic benefits of targeting VDR for the treatment of malignancies and demonstrate the creation of selective VDR antagonists that are easy to synthesize.
Collapse
Affiliation(s)
- Negar Khazan
- Wilmot
Cancer Institute and Division of Gynecologic Oncology, Department
of Obstetrics and Gynecology, University
of Rochester Medical Center, Rochester New York 14624, United States
| | - Kyu Kwang Kim
- Wilmot
Cancer Institute and Division of Gynecologic Oncology, Department
of Obstetrics and Gynecology, University
of Rochester Medical Center, Rochester New York 14624, United States
| | - Jeanne N. Hansen
- Department
of Pediatrics, University of Rochester Medical
Center, Rochester, New York 14642, United
States
| | - Niloy A. Singh
- Wilmot
Cancer Institute and Division of Gynecologic Oncology, Department
of Obstetrics and Gynecology, University
of Rochester Medical Center, Rochester New York 14624, United States
| | - Taylor Moore
- Wilmot
Cancer Institute and Division of Gynecologic Oncology, Department
of Obstetrics and Gynecology, University
of Rochester Medical Center, Rochester New York 14624, United States
| | - Cameron W. A. Snyder
- Wilmot
Cancer Institute and Division of Gynecologic Oncology, Department
of Obstetrics and Gynecology, University
of Rochester Medical Center, Rochester New York 14624, United States
| | - Ravina Pandita
- Wilmot
Cancer Institute and Division of Gynecologic Oncology, Department
of Obstetrics and Gynecology, University
of Rochester Medical Center, Rochester New York 14624, United States
| | - Myla Strawderman
- Department
of Biostatistics and Computational Biology, University of Rochester Medical Center, Rochester, New York 14624, United States
| | - Michiko Fujihara
- Division
of Pharmaceutical Sciences, Okayama University Graduate School of
Medicine, Dentistry and Pharmaceutical Sciences, Kita-ku, Okayama 700-8530, Japan
| | - Yuta Takamura
- Division
of Pharmaceutical Sciences, Okayama University Graduate School of
Medicine, Dentistry and Pharmaceutical Sciences, Kita-ku, Okayama 700-8530, Japan
| | - Ye Jian
- Division
of Surgery and of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York 14624, United States
| | - Nicholas Battaglia
- Division
of Surgery and of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York 14624, United States
| | - Naohiro Yano
- Department
of Surgery, Division of Surgical Research, Rhode Island Hospital, Alpert Medical School of Brown University, Providence, Rhode Island 02903, United States
| | - Yuki Teramoto
- Department
of Pathology and Laboratory Medicine, University
of Rochester Medical Center, Rochester, New York 14624, United States
| | - Leggy A. Arnold
- Department
of Chemistry and Biochemistry, University
of Wisconsin Milwaukee, Milwaukee, Wisconsin 53211, United States
| | - Russell Hopson
- Department
of Chemistry, Brown University, Providence, Rhode Island 02912, United States
| | - Keshav Kishor
- Department
of Chemistry, Birla Institute of Technology, Mesra, Ranchi 835215, India
| | - Sneha Nayak
- Department
of Chemistry, Birla Institute of Technology, Mesra, Ranchi 835215, India
| | - Debasmita Ojha
- Department
of Chemistry, Birla Institute of Technology, Mesra, Ranchi 835215, India
| | - Ashoke Sharon
- Department
of Chemistry, Birla Institute of Technology, Mesra, Ranchi 835215, India
| | - John M. Ashton
- Genomics Core Facility, Wilmot Cancer Center, University of Rochester Medical Center, Rochester, New York 14624, United States
| | - Jian Wang
- Department of Pharmacology and Department of Biochemistry and Molecular
Biology, Penn State College of Medicine, Penn State University, Hershey, Pennsylvania 17036, United States
| | - Michael T. Milano
- Department of Radiation Oncology, University
of Rochester Medical Center, Rochester, New York 16424, United States
| | - Hiroshi Miyamoto
- Department
of Pathology and Laboratory Medicine, University
of Rochester Medical Center, Rochester, New York 14624, United States
| | - David C. Linehan
- Division
of Surgery and of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York 14624, United States
| | - Scott A. Gerber
- Division
of Surgery and of Microbiology and Immunology, University of Rochester Medical Center, Rochester, New York 14624, United States
- Department of Radiation Oncology, University
of Rochester Medical Center, Rochester, New York 16424, United States
| | - Nada Kawar
- Center for Breast Health and Gynecologic
Oncology, Mercy Medical Center, 271 Carew Street, Springfield, Massachusetts 01104, United States
| | - Ajay P. Singh
- Rutgers, The State University of New Jersey, 59 Dudley Road, New Brunswick, New Jersey 08019, United States
| | - Erdem D. Tabdanov
- CytoMechanobiology
Laboratory, Department of Pharmacology, Penn State College of Medicine, Pennsylvania State University, Hershey, Pennsylvania 17036, United States
| | - Nikolay V. Dokholyan
- Department of Pharmacology and Department of Biochemistry and Molecular
Biology, Penn State College of Medicine, Penn State University, Hershey, Pennsylvania 17036, United States
| | - Hiroki Kakuta
- Division
of Pharmaceutical Sciences, Okayama University Graduate School of
Medicine, Dentistry and Pharmaceutical Sciences, Kita-ku, Okayama 700-8530, Japan
| | - Peter W. Jurutka
- School of Mathematical and Natural Sciences, Arizona State University, Health Futures Center, Phoenix, Arizona 85054, United States
- University of Arizona College of Medicine, Phoenix, Arizona 85004, United States
| | - Nina F. Schor
- Departments of Pediatrics, Neurology, and Neuroscience, University of Rochester Medical Center, Rochester, New York 14642, United States
| | - Rachael B. Rowswell-Turner
- Wilmot
Cancer Institute and Division of Gynecologic Oncology, Department
of Obstetrics and Gynecology, University
of Rochester Medical Center, Rochester New York 14624, United States
| | - Rakesh K. Singh
- Wilmot
Cancer Institute and Division of Gynecologic Oncology, Department
of Obstetrics and Gynecology, University
of Rochester Medical Center, Rochester New York 14624, United States
| | - Richard G. Moore
- Wilmot
Cancer Institute and Division of Gynecologic Oncology, Department
of Obstetrics and Gynecology, University
of Rochester Medical Center, Rochester New York 14624, United States
| |
Collapse
|
4
|
Watanabe M, Nakamura-Nakayama M, Fujihara M, Kawasaki M, Nakano S, Kakuta H. Increased Molecular Flexibility Widens the Gap between K i and K d values in Screening for Retinoid X Receptor Modulators. ACS Med Chem Lett 2022; 13:211-217. [PMID: 35178177 PMCID: PMC8842113 DOI: 10.1021/acsmedchemlett.1c00575] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Accepted: 01/19/2022] [Indexed: 11/29/2022] Open
Abstract
Screening for small-molecule modulators targeting a particular receptor is frequently based on measurement of K d, i.e., the binding constant between the receptor and the compound of interest. However, K d values also reflect binding at receptor protein sites other than the modulatory site. We designed derivatives of retinoid X receptor (RXR) antagonist CBTF-EE (1) with modifications that altered their conformational flexibility. Compounds 6a,b and 7a,b showed quite similar K d values, but 7a,b exhibited 10-fold higher K i values than those of 6a,b. Further, 6a,b showed potent RXR-antagonistic activity, while 7a,b were inactive. These results suggest that increased conformational flexibility promotes binding at nontarget receptor sites. In this situation, conventional determination of K d is less effective for screening purposes than the determination of K i using a ligand that binds specifically to the site regulating transcriptional activity. Thus, the use of K i values for orthosteric ligands may increase the hit rate in screening active regulatory molecules.
Collapse
Affiliation(s)
- Masaki Watanabe
- Division
of Pharmaceutical Sciences, Okayama University
Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 1-1-1, Tsushima-naka, Kita-ku, Okayama 700-8530, Japan
| | - Mariko Nakamura-Nakayama
- Division
of Pharmaceutical Sciences, Okayama University
Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 1-1-1, Tsushima-naka, Kita-ku, Okayama 700-8530, Japan
| | - Michiko Fujihara
- Division
of Pharmaceutical Sciences, Okayama University
Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 1-1-1, Tsushima-naka, Kita-ku, Okayama 700-8530, Japan,AIBIOS
K.K., Tri-Seven Roppongi
8F, 7-7-7 Roppongi, Minato-ku, Tokyo 106-0032, Japan
| | - Mayu Kawasaki
- Graduate
School of Integrated Pharmaceutical and Nutritional Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
| | - Shogo Nakano
- Graduate
School of Integrated Pharmaceutical and Nutritional Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
| | - Hiroki Kakuta
- Division
of Pharmaceutical Sciences, Okayama University
Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, 1-1-1, Tsushima-naka, Kita-ku, Okayama 700-8530, Japan,. Phone: +81-(0)86-251-7963
| |
Collapse
|