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Yao B, Paluch M, Wojnarowska Z, Kruk D. Effect of Alkyl Chain Length on the Magnitude of Dynamically Correlated Molecules and Dynamical Crossover in Alkyltriethylammonium-Based Ionic Liquids. J Phys Chem B 2024; 128:12578-12585. [PMID: 39635872 DOI: 10.1021/acs.jpcb.4c05070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2024]
Abstract
This study explores the impact of alkyl chain length on dynamic heterogeneity and dynamic crossover in alkyltriethylammonium-based ionic liquids ([TEA-R][TFSI]) with varying alkyl chain lengths (R = C6, C8, and C10). Using differential scanning calorimetry and broadband dielectric spectroscopy, we observed that these ionic liquids are excellent glassformers with notable ionic conductivity at room temperature. Furthermore, the number of dynamically correlated molecules at the glass transition temperature, reflecting the dynamic heterogeneity, is exceptionally small for TEA-R ILs and becomes more reduced with longer alkyl chains. Moreover, the temperature dependence of conductivity requires two Vogel-Fulcher-Tammann equations with distinct sets of fitting parameters for an accurate description. The crossover temperature Tb, indicating the transition to complex dynamics, increases with the alkyl chain length.
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Affiliation(s)
- Beibei Yao
- Silesian Center for Education and Interdisciplinary Research, Institute of Physics, University of Silesia in Katowice, 75 Pułku Piechoty 1A, Chorzów 41-500, Poland
| | - Marian Paluch
- Silesian Center for Education and Interdisciplinary Research, Institute of Physics, University of Silesia in Katowice, 75 Pułku Piechoty 1A, Chorzów 41-500, Poland
| | - Zaneta Wojnarowska
- Silesian Center for Education and Interdisciplinary Research, Institute of Physics, University of Silesia in Katowice, 75 Pułku Piechoty 1A, Chorzów 41-500, Poland
| | - Danuta Kruk
- Department of Physics and Biophysics, University of Warmia & Mazury in Olsztyn, Oczapowskiego 4, Olsztyn 10-719, Poland
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Bera P, Wasim A, Bakshi S, Mondal J. Protein translation can fluidize bacterial cytoplasm. PNAS NEXUS 2024; 3:pgae532. [PMID: 39660062 PMCID: PMC11630519 DOI: 10.1093/pnasnexus/pgae532] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Accepted: 11/13/2024] [Indexed: 12/12/2024]
Abstract
The cytoplasm of bacterial cells is densely packed with highly polydisperse macromolecules that exhibit size-dependent glassy dynamics. Recent research has revealed that metabolic activities in living cells can counteract the glassy nature of these macromolecules, allowing the cell to maintain critical fluidity for its growth and function. While it has been proposed that the crowded cytoplasm is responsible for this glassy behavior, a detailed analysis of the size-dependent nature of the glassy dynamics and an explanation for how cellular activity induces its fluidization remains elusive. Here, we use a combination of computational models and targeted experiments to show that entropic segregation of the protein synthesis machinery from the chromosomal DNA causes size-dependent spatial organization of molecules within the cell, and the resultant crowding leads to size-dependent glassy dynamics. Furthermore, Brownian dynamics simulations of this in silico system supports a new hypothesis: protein synthesis in living cells contributes to the metabolism-dependent fluidization of the cytoplasm. The main protein synthesis machinery, ribosomes, frequently shift between fast and slow diffusive states. These states correspond to the independent movement of ribosomal subunits and the actively translating ribosome chains called polysomes, respectively. Our simulations demonstrate that the frequent transitions of the numerous ribosomes, which constitute a significant portion of the cell proteome, greatly enhance the mobility of other macromolecules within the bacterial cytoplasm. Considering that ribosomal protein synthesis is the largest consumer of ATP in growing bacterial cells, the translation process can serve as the primary mechanism for fluidizing the cytoplasm in metabolically active cells.
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Affiliation(s)
- Palash Bera
- Tata Institute of Fundamental Research, Hyderabad, Telangana 500046, India
| | - Abdul Wasim
- Tata Institute of Fundamental Research, Hyderabad, Telangana 500046, India
| | - Somenath Bakshi
- Department of Engineering, University of Cambridge, Cambridge CB2 1PZ, United Kingdom
| | - Jagannath Mondal
- Tata Institute of Fundamental Research, Hyderabad, Telangana 500046, India
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Rinesh T, Srinivasan H, Sharma VK, Mitra S. Unraveling relationship between complex lifetimes and microscopic diffusion in deep eutectic solvents. J Chem Phys 2024; 161:024501. [PMID: 38973757 DOI: 10.1063/5.0213402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Accepted: 06/17/2024] [Indexed: 07/09/2024] Open
Abstract
Aqueous mixtures of deep eutectic solvents (DESs) have emerged as a subject of interest in recent years for their tailored physicochemical properties. However, a comprehensive understanding of water's multifaceted influence on the microscopic dynamics, including its impact on improved transport properties of the DES, remains elusive. Additionally, the diffusion mechanisms within DESs manifest heterogeneous behavior, intricately tied to the formation and dissociation kinetics of complexes and hydrogen bonds. Therefore, it is imperative to explore the intricate interplay between bond kinetics, diffusion mechanism, and dynamical heterogeneity. This work employs water as an agent to explore their relationships by studying various relaxation phenomena in a DES based on acetamide and lithium perchlorate over a wide range of water concentrations. Notably, acetamide exhibits Fickian yet non-Gaussian diffusion across all water concentrations with Fickian (τf) and Gaussian (τg) timescales following a power-law relationship, τg∝τfγ, γ ∼ 1.4. The strength of coupling between bond kinetics and different diffusion timescales is estimated through various power-law relationships. Notably, acetamide-water hydrogen bond lifetime is linked to diffusive timescales through a single power-law over the entire water concentration studied. However, the relationship between diffusive timescales and the lifetime of acetamide-lithium complexes shows a sharp transition in behavior at 20 wt. % water, reflecting a change from vehicular diffusion below this concentration to structural diffusion above it. Our findings emphasize the critical importance of understanding bond dynamics within DESs, as they closely correlate with and regulate the molecular diffusion processes within these systems.
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Affiliation(s)
- T Rinesh
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - H Srinivasan
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - V K Sharma
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - S Mitra
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
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Yu T, Mason TG. Heptatic liquid quasi-crystals by colloidal lithographic pre-assembly. J Colloid Interface Sci 2024; 665:535-544. [PMID: 38538483 DOI: 10.1016/j.jcis.2023.12.157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 12/06/2023] [Accepted: 12/27/2023] [Indexed: 04/17/2024]
Abstract
HYPOTHESIS We hypothesize that pre-assembled lithographic Brownian seven-fold quasi-crystals (QCs) of colloidal tiles at high densities can exhibit a heptatic liquid quasi-crystal (LQC) phase upon release; such heptatic LQCs can undergo heterogeneous dynamics at different length scales, reflecting the underlying symmetry, corrugation, and hierarchy of local sets of tiles. EXPERIMENTS We design, fabricate, and release a seven-fold QC composed of three differently shaped rhombic tiles using the method of lithographically pre-assembled monolayers (litho-PAMs). High resolution optical microscopy enables spatio-temporal particle tracking of Brownian fluctuations of many tiles in a large area over a long time. We develop an edge-proximity tessellation method for analyzing nearest neighboring particles that can be applied to assemblies and dense systems of complex shapes. FINDINGS A fluctuating heptatic LQC phase is identified at high tile area fractions. Heterogenous dynamics and order at different length scales indicate diverse, hierarchical motif structures. We show that certain motifs can collectively rotate without any cage breaking, leading to alterations of the local tile-structure reminiscent of phason-flips in atomic QCs; this rotation causes a slow decline in the system's spatial order. We anticipate that edge-proximity tessellation will help elucidate phase transitions of other systems made of diverse building blocks having significant geometrical complexity at multiple length scales.
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Affiliation(s)
- Tianren Yu
- Department of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, CA 90095, USA
| | - Thomas G Mason
- Department of Chemistry and Biochemistry, University of California-Los Angeles, Los Angeles, CA 90095, USA; Department of Physics and Astronomy, University of California-Los Angeles, Los Angeles, CA 90095, USA; California NanoSystems Institute, University of California-Los Angeles, Los Angeles, CA 90095, USA.
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Ai BQ, Guo RX, Zeng CH, He YF. Rotational inertia-induced glassy transition in chiral particle systems. Phys Rev E 2024; 109:064902. [PMID: 39020947 DOI: 10.1103/physreve.109.064902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2024] [Accepted: 05/12/2024] [Indexed: 07/20/2024]
Abstract
The dense active matter exhibits characteristics reminiscent of traditional glassy phenomena, yet the role of rotational inertia in glass dynamics remains elusive. In this study, we investigate the glass dynamics of chiral active particles influenced by rotational inertia. Rotational inertia endows exponential memory to particle orientation, restricting its alteration and amplifying the effective persistence time. At lower spinning frequencies, the diffusion coefficient exhibits a peak function relative to rotational inertia for shorter persistence times, while it steadily increases with rotational inertia for longer persistence times. In the realm of high-frequency spinning, the impact of rotational inertia on diffusion behavior becomes more pronounced, resulting in a nonmonotonic and intricate relationship between the diffusion coefficient and rotational inertia. Consequently, the introduction of rotational inertia significantly alters the glassy dynamics of chiral active particles, allowing for the control over transitions between fluid and glassy states by modulating rotational inertia. Moreover, our findings indicate that at a specific spinning temperature, there exists an optimal spinning frequency at which the diffusion coefficient attains its maximum value.
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Affiliation(s)
- Bao-Quan Ai
- Key Laboratory of Atomic and Subatomic Structure and Quantum Control (Ministry of Education), and School of Physics, South China Normal University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, and Guangdong-Hong Kong Joint Laboratory of Quantum Matter, South China Normal University, Guangzhou 510006, China
| | - Rui-Xue Guo
- Key Laboratory of Atomic and Subatomic Structure and Quantum Control (Ministry of Education), and School of Physics, South China Normal University, Guangzhou 510006, China
- Guangdong Provincial Key Laboratory of Quantum Engineering and Quantum Materials, and Guangdong-Hong Kong Joint Laboratory of Quantum Matter, South China Normal University, Guangzhou 510006, China
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Mutneja A, Karmakar S. Method to probe the pronounced growth of correlation lengths in active glass-forming liquids using an elongated probe. Phys Rev E 2023; 108:L022601. [PMID: 37723727 DOI: 10.1103/physreve.108.l022601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2022] [Accepted: 07/01/2023] [Indexed: 09/20/2023]
Abstract
The growth of correlation lengths in equilibrium glass-forming liquids near the glass transition is considered a critical finding in the quest to understand the physics of glass formation. These understandings helped us understand various dynamical phenomena observed in supercooled liquids. It is known that at least two different length scales exist; one is of thermodynamic origin, while the other is dynamical in nature. Recent observations of glassy dynamics in biological and synthetic systems where the external or internal driving source controls the dynamics, apart from the usual thermal noise, lead to the emergence of the field of active glassy matter. A question of whether the physics of glass formation in these active systems is also accompanied by growing dynamic and static lengths is indeed timely. In this article, we probe the growth of dynamic and static lengths in a model active glass system using rod-like elongated probe particles, an experimentally viable method. We show that the dynamic and static lengths in these nonequilibrium systems grow much more rapidly than their passive counterparts. We then offer an understanding of the violation of the Stokes-Einstein relation and Stokes-Einstein-Debye relation using these lengths via a scaling theory.
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Affiliation(s)
- Anoop Mutneja
- Tata Institute of Fundamental Research, 36/P, Gopanpally Village, Serilingampally Mandal,Ranga Reddy District, Hyderabad, Telangana 500107, India
| | - Smarajit Karmakar
- Tata Institute of Fundamental Research, 36/P, Gopanpally Village, Serilingampally Mandal,Ranga Reddy District, Hyderabad, Telangana 500107, India
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Laudicina CCL, Luo C, Miyazaki K, Janssen LMC. Dynamical susceptibilities near ideal glass transitions. Phys Rev E 2022; 106:064136. [PMID: 36671198 DOI: 10.1103/physreve.106.064136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 11/28/2022] [Indexed: 06/17/2023]
Abstract
Building on the recently derived inhomogeneous mode-coupling theory, we extend the generalized mode-coupling theory of supercooled liquids to inhomogeneous environments. This provides a first-principles-based, systematic, and rigorous way of deriving high-point dynamical susceptibilities from variations of the many-body dynamic structure factors with respect to their conjugate field. This framework allows for a fully microscopic possibility to probe for collective relaxation mechanisms in supercooled liquids near the mode-coupling glass transition. The behavior of these dynamical susceptibilities is then studied in the context of simplified self-consistent relaxation models.
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Affiliation(s)
- Corentin C L Laudicina
- Soft Matter & Biological Physics, Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600MB Eindhoven, The Netherlands
| | - Chengjie Luo
- Soft Matter & Biological Physics, Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600MB Eindhoven, The Netherlands
| | | | - Liesbeth M C Janssen
- Soft Matter & Biological Physics, Department of Applied Physics, Eindhoven University of Technology, P.O. Box 513, 5600MB Eindhoven, The Netherlands
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Tah I, Ridout SA, Liu AJ. Fragility in glassy liquids: A structural approach based on machine learning. J Chem Phys 2022; 157:124501. [PMID: 36182409 DOI: 10.1063/5.0099071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The rapid rise of viscosity or relaxation time upon supercooling is a universal hallmark of glassy liquids. The temperature dependence of viscosity, however, is quite nonuniversal for glassy liquids and is characterized by the system's "fragility," with liquids with nearly Arrhenius temperature-dependent relaxation times referred to as strong liquids and those with super-Arrhenius behavior referred to as fragile liquids. What makes some liquids strong and others fragile is still not well understood. Here, we explore this question in a family of harmonic spheres that range from extremely strong to extremely fragile, using "softness," a structural order parameter identified by machine learning to be highly correlated with dynamical rearrangements. We use a support vector machine to identify softness as the same linear combination of structural quantities across the entire family of liquids studied. We then use softness to identify the factors controlling fragility.
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Affiliation(s)
- Indrajit Tah
- Department of Physics and Astronomy, University of Pennsylvania, 209 South 33rd Street, Philadelphia, Pennsylvania 19104, USA
| | - Sean A Ridout
- Department of Physics and Astronomy, University of Pennsylvania, 209 South 33rd Street, Philadelphia, Pennsylvania 19104, USA
| | - Andrea J Liu
- Department of Physics and Astronomy, University of Pennsylvania, 209 South 33rd Street, Philadelphia, Pennsylvania 19104, USA
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Bhatt S, Bagchi D. Molecular and micro-scale heterogeneities in Raman modes of a relaxing polymer glass. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2021; 33:325101. [PMID: 34062521 DOI: 10.1088/1361-648x/ac06ec] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2021] [Accepted: 06/01/2021] [Indexed: 06/12/2023]
Abstract
We have used Raman spectroscopy to study relaxation dynamics at two different length scales, molecular level and micro-scale in order to probe the presence of cooperative rearranging regions in a polymer glass. Response to slow thermal cycles and fast quench through the glass transition temperature (Tg) is analyzed for film and unprocessed forms of polyvinyl acetate (PVAc). In PVAc film, enhanced disorder and molecular mobility lead to peak broadening by about a factor of 10 compared to unprocessed PVAc. Thermal cycles (10 K min-1) produce hysteresis in integrated Raman peak intensity (loop areaAINTI).AINTIvalues of film are two orders of magnitude more than unprocessed, indicating more configurational mosaics with higher interfacial energy dissipations. Ageing after 60 K min-1quench manifests as heterogeneous molecular dynamics of film Raman modes with significant peak-width variations, differentiating high mobility and low mobility modes. Two-dimensional mapping of film Raman modes after quench reveal micro-scale clusters of average size ≈250 molecules having fractal boundaries with fractal dimensiondf= 1.5, resemblingdfof percolation clusters below percolation threshold. During thermal cycling and relaxation after a quench, cooperative segmental dynamics with large correlations between skeletal C-C stretch and side branch modes is observed. The observations are analyzed in the context of the random first order transition theory of glasses, which attributes heterogeneous relaxations in glasses to the presence of clusters of variable configurational states.
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Affiliation(s)
- Shipra Bhatt
- Department of Physics, Faculty of Science, The Maharaja Sayajirao University of Baroda, Vadodara-390002, Gujarat, India
| | - Debjani Bagchi
- Department of Physics, Faculty of Science, The Maharaja Sayajirao University of Baroda, Vadodara-390002, Gujarat, India
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10
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Mutneja A, Karmakar S. Translational dynamics of a rod-like probe in supercooled liquids: an experimentally realizable method to study Stokes-Einstein breakdown, dynamic heterogeneity, and amorphous order. SOFT MATTER 2021; 17:5738-5746. [PMID: 34018543 DOI: 10.1039/d1sm00509j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The use of probe molecules to extract the local dynamical and structural properties of complex dynamical systems is an age-old technique both in simulations and in experiments. A lot of important information which is not immediately accessible from bulk measurements can be accessed via these local measurements. Still, a detailed understanding of how a probe particle dynamics is affected by the surrounding liquid medium is lacking, especially in the supercooled temperature regime. This work shows how the translational dynamics of a rod-like particle immersed in a supercooled liquid can give us information on the growth of the correlation length scales associated with dynamical heterogeneity and the multi-body static correlations in the medium. This work also provides an understanding of the breakdown of Stokes-Einstein and Stokes-Einstein-Debye relations in supercooled liquids along with a unified scaling theory that rationalizes all the observed results. Finally, this work proposes a novel yet simple method accessible in experiments to measure the growth of these important length scales in molecular glass-forming liquids.
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Affiliation(s)
- Anoop Mutneja
- Tata Institute of Fundamental Research, 36/P,Gopanpally Village, Serilingampally Mandal, Ranga Reddy District, Hyderabad, 500107, India.
| | - Smarajit Karmakar
- Tata Institute of Fundamental Research, 36/P,Gopanpally Village, Serilingampally Mandal, Ranga Reddy District, Hyderabad, 500107, India.
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