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Li C, Chen R, Ouyang W, Xue C, Liu M, Liu H. The response of C/N/S cycling functional microbial communities to redox conditions in shallow aquifers using in-situ sediment as bio-trap matrix. ENVIRONMENTAL TECHNOLOGY 2024; 45:3666-3678. [PMID: 37323025 DOI: 10.1080/09593330.2023.2225704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/03/2022] [Accepted: 05/20/2023] [Indexed: 06/17/2023]
Abstract
Microbial communities are fundamental components driving critical biogeochemical carbon (C), nitrogen (N) and sulfur (S) cycles in groundwater ecosystems. The reduction-oxidation (redox) potential is one important environmental factor influencing the microbial community composition. Here, we developed a bio-trap method using in-situ sediment as a matrix to collect aquifer sediment samples and evaluate the response of microbial composition and C/N/S cycling functions to redox variations created by providing sole O2, joint O2 and H2, and sole H2 to three wells. Illumina sequencing analyses showed that the microbial communities in the bio-trap sediment could respond quickly to redox changes in the wells, demonstrating that this bio-trap method is promising for detecting microbial variation in the aquifer sediment. The microbial metabolic functions related to C, N and S cyclings and organic pollutants degradation were predicted by the Kyoto Encyclopedia of Genes and Genomes (KEGG) approach. It was found that the joint O2 and H2 injection produced medium oxidation-reduction potential (ORP -346 and -614 mV) and enhanced more microbial functions than sole O2 or H2, which mainly include oxidative phosphorylation, most carbon source metabolism, various pollutants degradation, and nitrogen and sulfur metabolism. Moreover, the functional genes encoding phenol monooxygenase, dioxygenase, nitrogen fixation, nitrification, aerobic and anaerobic nitrate reductase, nitrite reductase, nitric oxide reductase, and sulfur oxidation increased. These findings tell us the contaminant bioremediation and N, S metabolism can be promoted by adjusting ORP realised by injecting joint O2 and H2.
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Affiliation(s)
- Cui Li
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, People's Republic of China
- Hubei Ecology Polytechnic College, Wuhan, People's Republic of China
| | - Rong Chen
- School of Environmental and Biological Engineering, Wuhan Technology and Business University, Wuhan, People's Republic of China
| | - Weiwei Ouyang
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, People's Republic of China
| | - Chen Xue
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, People's Republic of China
| | - Minghui Liu
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, People's Republic of China
| | - Hui Liu
- Hubei Key Laboratory of Yangtze Catchment Environmental Aquatic Science, School of Environmental Studies, China University of Geosciences, Wuhan, People's Republic of China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, People's Republic of China
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Li Y, Chen J, Tang S, Xi Z. Microbial Communities Affected by Hydraulic Fracturing and Environmental Factors within an In Situ Coal Reservoir. Microorganisms 2023; 11:1657. [PMID: 37512830 PMCID: PMC10385777 DOI: 10.3390/microorganisms11071657] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Revised: 06/19/2023] [Accepted: 06/20/2023] [Indexed: 07/30/2023] Open
Abstract
The rise of coalbed methane bioengineering enables the conversion and utilization of carbon dioxide through microbial action and the carbon cycle. The environment of underground coal reservoirs is the result of a comprehensive effort by microorganisms. Some studies on reservoir microorganisms have progressed in laboratory conditions. However, it does not replicate the interaction between microorganisms and the environment on site. Hydraulic fracturing is an engineering technology to improve the natural permeability of tight reservoirs and is also a prerequisite for increasing biomethane production. In addition to expanding the pore and fracture systems of coal reservoirs, hydraulic fracturing also improves the living conditions of microbial communities in underground space. The characteristics of microbial communities in the reservoir after hydraulic fracturing are unclear. To this end, we applied the 16S rRNA sequencing technique to coalbed methane production water after hydraulic fracturing south of the Qinshui Basin to analyze the microbial response of the hydraulic fracturing process in the coal reservoir. The diversity of microbial communities associated with organic degradation was improved after hydraulic fracturing in the coal reservoir. The proportion of Actinobacteria in the reservoir water of the study area increased significantly, and the abundance of Aminicenantes and Planctomycetes increased, which do not exist in non-fracturing coalbed methane wells or exist at very low abundance. There are different types of methanogens in the study area, especially in fracturing wells. Ecological factors also determine the metabolic pathway of methanogens in coal seams. After hydraulic fracturing, the impact on the reservoir's microbial communities remains within months. Hydraulic fracturing can strengthen the carbon circulation process, thereby enhancing the block's methane and carbon dioxide circulation. The study provides a unique theoretical basis for microbially enhanced coalbed methane.
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Affiliation(s)
- Yang Li
- School of Earth and Environment, Anhui University of Science and Technology, Huainan 232001, China
- The Key Laboratory of Universities in Anhui Province for Prevention of Mine Geological Disasters, Anhui University of Science and Technology, Huainan 232001, China
- Key Laboratory of Petroleum Resources and Prospecting, China University of Petroleum, Beijing 102249, China
| | - Jian Chen
- School of Earth and Environment, Anhui University of Science and Technology, Huainan 232001, China
- The Key Laboratory of Universities in Anhui Province for Prevention of Mine Geological Disasters, Anhui University of Science and Technology, Huainan 232001, China
| | - Shuheng Tang
- School of Energy Resource, China University of Geosciences, Beijing 100083, China
- Key Laboratory of Marine Reservoir Evolution and Hydrocarbon Enrichment Mechanism, Ministry of Education, Beijing 100083, China
- Key Laboratory of Strategy Evaluation for Shale Gas, Ministry of Land and Resources, Beijing 100083, China
| | - Zhaodong Xi
- School of Energy Resource, China University of Geosciences, Beijing 100083, China
- Key Laboratory of Marine Reservoir Evolution and Hydrocarbon Enrichment Mechanism, Ministry of Education, Beijing 100083, China
- Key Laboratory of Strategy Evaluation for Shale Gas, Ministry of Land and Resources, Beijing 100083, China
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Shi W, Tang S, Zhang S. Microbiome of High-Rank Coal Reservoirs in the High-Production Areas of the Southern Qinshui Basin. Microorganisms 2023; 11:microorganisms11020497. [PMID: 36838462 PMCID: PMC9963281 DOI: 10.3390/microorganisms11020497] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 02/09/2023] [Accepted: 02/15/2023] [Indexed: 02/19/2023] Open
Abstract
To study the distribution features of microorganisms in distinct hydrological areas of the southern Qinshui Basin, C-N-S microorganisms were studied using 16S RNA sequencing, metagenome sequencing and geochemical technologies, showing the high sensitivity of microorganisms to the hydrodynamic dynamics of coal. The hydrodynamic intensity of the #3 coal gradually decreased from the runoff areas to the stagnant areas. The stagnant zones have higher reservoir pressure, methane content, δ13CDIC and TDS and lower SO42-, Fe3+ and NO3- concentrations than the runoff areas. C-N-S-cycling microorganisms, including those engaged in methanogenesis, nitrate respiration, fermentation, nitrate reduction, dark oxidation of sulfur compounds, sulfate respiration, iron respiration, chlorate reduction, aromatic compound degradation, denitrification, ammonification and nitrogen fixation, were more abundant in the stagnant areas. The relative abundance of C-N-S functional genes, including genes related to C metabolism (e.g., mcr, mer, mtr, fwd and mtd), N metabolism (e.g., nifDKH, nirK, narGHI, nosZ, amoB, norC and napAB) and sulfur metabolism (e.g., dsrAB and PAPSS), increased in the stagnant zones, indicating that there was active microbiological C-N-S cycling in the stagnant areas. The degradation and fermentation of terrestrial plant organic carbon and coal seam organic matter could provide substrates for methanogens, while nitrogen fixation and nitrification can provide nitrogen for methanogens, which are all favorable factors for stronger methanogenesis in stagnant areas. The coal in the study area is currently in the secondary biogenic gas generation stage because of the rising of the strata, which recharges atmospheric precipitation. The random forest model shows that the abundance of C-N-S microorganisms and genes could be used to distinguish different hydrological zones in coal reservoirs. Since stagnant zones are usually high-gas-bearing zones and high-production areas of CBM exploration, these microbiological indicators can be used as effective parameters to identify high-production-potential zones. In addition, nitrate respiration and sulfate respiration microorganisms consumed NO3- and SO42-, causing a decrease in the content of these two ions in the stagnant areas.
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Affiliation(s)
- Wei Shi
- MOE Key Lab of Marine Reservoir Evolution and Hydrocarbon Enrichment Mechanism, Beijing 100083, China
- MOLR Key Lab of Shale Gas Resources Survey and Strategic Evaluation, Beijing 100083, China
- School of Energy Resources, China University of Geosciences (Beijing), Beijing 100083, China
| | - Shuheng Tang
- MOE Key Lab of Marine Reservoir Evolution and Hydrocarbon Enrichment Mechanism, Beijing 100083, China
- MOLR Key Lab of Shale Gas Resources Survey and Strategic Evaluation, Beijing 100083, China
- School of Energy Resources, China University of Geosciences (Beijing), Beijing 100083, China
- Correspondence:
| | - Songhang Zhang
- MOE Key Lab of Marine Reservoir Evolution and Hydrocarbon Enrichment Mechanism, Beijing 100083, China
- MOLR Key Lab of Shale Gas Resources Survey and Strategic Evaluation, Beijing 100083, China
- School of Energy Resources, China University of Geosciences (Beijing), Beijing 100083, China
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Li Y, Liu B, Chen J, Yue X. Carbon-Nitrogen-Sulfur-Related Microbial Taxa and Genes Maintained the Stability of Microbial Communities in Coals. ACS OMEGA 2022; 7:22671-22681. [PMID: 35811862 PMCID: PMC9260939 DOI: 10.1021/acsomega.2c02126] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Accepted: 06/08/2022] [Indexed: 06/03/2023]
Abstract
Coal microbes are the predominant form of life in the subsurface ecosystem, which play a vital role in biogeochemical cycles. However, the systematic information about carbon-nitrogen-sulfur (C-N-S)-related microbial communities in coal seams is limited. In this study, 16S rRNA gene data from a total of 93 microbial communities in coals were collected for meta-analysis. The results showed that 718 functional genera were related to the C-N-S cycle, wherein N2 fixation, denitrification, and C degradation groups dominated in relative abundance, Chao1 richness, Shannon diversity, and niche width. Genus Pseudomonas having the most C-N-S-related functions showed the highest relative abundance, and genus Herbaspirillum with a higher abundance participated in C degradation, CH4 oxidation, N2 fixation, ammoxidation, and denitrification. Such Herbaspirillum was a core genus in the co-occurrence network of microbial prokaryotes and showed higher levels in weight degree, betweenness centrality, and eigenvector centrality. In addition, most of the methanogens could fix N2 and dominated in the N2 fixation groups. Among them, genera Methanoculleus and Methanosaeta showed higher levels in the betweenness centrality index. In addition, the genus Clostridium was linked to the methanogenesis co-occurrence network module. In parallel, the S reduction gene was present in the highest total relative abundance of genes, followed by the C degradation and the denitrification genes, and S genes (especially cys genes) were the main genes linked to the co-occurrence network of the C-N-S-related genes. In summary, this study strengthened our knowledge regarding the C-N-S-related coal microbial communities, which is of great significance in understanding the microbial ecology and geochemical cycle of coals.
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Affiliation(s)
- Yang Li
- State
Key Laboratory of Mining Response and Disaster Prevention and Control
in Deep Coal Mines, Anhui University of
Science & Technology, Huainan, Anhui 232001, China
- Institute
of Energy, Hefei Comprehensive National Science Center, Hefei, Anhui 230031, China
| | - Bingjun Liu
- State
Key Laboratory of Mining Response and Disaster Prevention and Control
in Deep Coal Mines, Anhui University of
Science & Technology, Huainan, Anhui 232001, China
- Institute
of Energy, Hefei Comprehensive National Science Center, Hefei, Anhui 230031, China
| | - Jian Chen
- Coal
Mining National Engineering and Technology Research Institute, Huainan, Anhui 232001, China
| | - Xuelian Yue
- Jinneng
Holding Shanxi Science and Technology Research Institute Co. LTD., Taiyuan, Shanxi 030600, China
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