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Malik AN, Ali A, Ashfaq M, Tahir MN, Alam MM, Mostafa MS, Kuznetsov A. A synthetic approach towards drug modification: 2-hydroxy-1-naphthaldehyde based imine-zwitterion preparation, single-crystal study, Hirshfeld surface analysis, and computational investigation. RSC Adv 2024; 14:6476-6493. [PMID: 38390507 PMCID: PMC10879849 DOI: 10.1039/d3ra08727a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 02/15/2024] [Indexed: 02/24/2024] Open
Abstract
The current work is about the modification of primary amine functionalized drugs, pyrimethamine and 4-amino-N-(2,3-dihydrothiazol-2-yl)benzenesulfonamide, via condensation reaction with 2-hydroxy-1-naphthaldehyde to produce new organic zwitterionic compounds (E)-1-(((4-(N-(2,3-dihydrothiazol-2-yl)sulfamoyl)phenyl)iminio)methyl)naphthalen-2-olate (DSPIN) and (E)-1-(((4-amino-5-(4-chlorophenyl)-6-ethylpyrimidin-2-yl)iminio)methyl)naphthalen-2-olate (ACPIN) in methanol as a solvent. The crystal structures of both compounds were confirmed to be imine-based zwitterionic products via single-crystal X-ray diffraction (SC-XRD) analysis which indicated that the stabilization of both crystalline compounds is achieved via various noncovalent interactions. The supramolecular assembly in terms of noncovalent interactions was explored by the Hirshfeld surface analysis. Void analysis was carried out to predict the crystal mechanical response. Compound geometries calculated in the DFT (Density Functional Theory) study showed reasonably good agreement with the experimentally determined structural parameters. Frontier molecular orbital (FMO) analysis showed that the DSPIN HOMO/LUMO gap is by 0.15 eV smaller than the ACPIN HOMO/LUMO gap due to some destabilization of the DSPIN HOMO and some stabilization of its LUMO. The results of the charge analysis implied formation of intramolecular hydrogen bonds and suggested formation of intermolecular hydrogen bonding and dipole-dipole and dispersion interactions.
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Affiliation(s)
| | - Akbar Ali
- Department of Chemistry, Government College University Faisalabad 38000-Faisalabad Pakistan
| | - Muhammad Ashfaq
- Department of Physics, University of Sargodha Sargodha 40100 Pakistan
| | | | - Mohammad Mahtab Alam
- Department of Basic Medical Sciences, College of Applied Medical Science, King Khalid University Abha 61421 Saudi Arabia
| | - Mohamed S Mostafa
- Department of Physical Sciences, College of Science, Jazan University P.O. Box 114 Jazan 45142 Saudi Arabia
| | - Aleksey Kuznetsov
- Departamento de Química, Campus Santiago Vitacura, Universidad Tecnica Federico Santa María Av. Santa María 6400 Vitacura 7660251 Chile
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Jamil S, Gondal HY, Ali A, Hussain A, Akram N, Nisar M, Tahir MN, Ashfaq M, Raza AR, Muhammad S, Cheema ZM, Mustafai A, Sameeh MY. Benzimidazolium quaternary ammonium salts: synthesis, single crystal and Hirshfeld surface exploration supported by theoretical analysis. ROYAL SOCIETY OPEN SCIENCE 2024; 11:231094. [PMID: 38356872 PMCID: PMC10864785 DOI: 10.1098/rsos.231094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Accepted: 01/12/2024] [Indexed: 02/16/2024]
Abstract
Owing to the broad applications of quaternary ammonium salts (QAS), we present the synthesis of benzimidazolium-based analogues with variation in the alkyl and alkoxy group at N-1 and N-3 positions. All the compounds were characterized by spectroscopic techniques and found stable to air and moisture both in the solid and solution state. Moreover, molecular structures were established through single-crystal X-ray diffraction studies. The crystal packing of the compounds was stabilized by numerous intermolecular interactions explored by Hirshfeld surface analysis. The enrichment ratio was calculated for the pairs of chemical species to acquire the highest propensity to form contacts. Void analysis was carried out to check the mechanical response of the compounds. Furthermore, theoretical investigations were also performed to explore the optoelectronic properties of compounds. Natural population analysis (NPA) has been conducted to evaluate the distribution of charges on the synthesized compounds, whereas high band gaps of the synthesized compounds by frontier molecular orbital (FMO) analysis indicated their stability. Nonlinear optical (NLO) analysis revealed that the synthesized QAS demonstrates significantly improved NLO behaviour than the standard urea.
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Affiliation(s)
- Sajid Jamil
- Institute of Chemistry, University of Sargodha, Sargodha, 40100, Pakistan
| | | | - Akbar Ali
- Department of Chemistry, Government College University Faisalabad, 38000 Faisalabad Pakistan
| | - Ajaz Hussain
- Institute of Chemical Sciences, Bahauddin Zakariya University Multan, 60800, Multan, Pakistan
| | - Nadia Akram
- Department of Chemistry, Government College University Faisalabad, 38000 Faisalabad Pakistan
| | - Muhammad Nisar
- Institute of Chemistry, University of Sargodha, Sargodha, 40100, Pakistan
| | | | - Muhammad Ashfaq
- Department of Physics, University of Sargodha, Sargodha, 40100 Pakistan
| | - Abdul Rauf Raza
- Institute of Chemistry, University of Sargodha, Sargodha, 40100, Pakistan
| | - Shabbir Muhammad
- Department of Chemistry, College of Science, King Khalid University, Abha 61413, PO Box 9004, Saudi Arabia
| | - Zain M. Cheema
- Institute of Chemistry, University of Sargodha, Sargodha, 40100, Pakistan
| | - Aleena Mustafai
- Institute of Chemical Sciences, Bahauddin Zakariya University Multan, 60800, Multan, Pakistan
| | - Manal Y. Sameeh
- Chemistry Department, Faculty of Applied Sciences, Al-Leith University College, Umm Al-Qura University, Makkah 24831, Saudi Arabia
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Riaz M, Ali A, Ashfaq M, Ibrahim M, Akram N, Tahir MN, Kuznetsov A, Rodríguez L, Sameeh MY, Assiri MA, Torre AFDL. Polymorphs of Substituted p-Toluenesulfonanilide: Synthesis, Single-Crystal Analysis, Hirshfeld Surface Exploration, and Theoretical Investigation. ACS OMEGA 2023; 8:35307-35320. [PMID: 37779999 PMCID: PMC10536877 DOI: 10.1021/acsomega.3c04957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/16/2023] [Accepted: 09/07/2023] [Indexed: 10/03/2023]
Abstract
Polymorphism is an exciting feature of chemical systems where a compound can exist in different crystal forms. The present investigation is focused on the two polymorphic forms, triclinic (MSBT) and monoclinic (MSBM), of ethyl 3-iodo-4-((4-methylphenyl)sulfonamido)benzoate prepared from ethyl 4-amino-3-iodobenzoate. The prepared polymorphs were unambiguously confirmed by single-crystal X-ray diffraction (SC-XRD) analysis. According to the SC-XRD results, the molecular configurations of both structures are stabilized by intramolecular N-H···I and C-H···O bonding. The crystal packing of MSBT is different as compared to the crystal packing of MSBM because MSBT is crystallized in the triclinic crystal system with the space group P1̅, whereas MSBM is crystallized in the monoclinic crystal system with the space group P21/c. The molecules of MSBT are interlinked in the form of dimers through N-H···O bonding to form R22(8) loops, while the MSBM molecules are connected with each other in the form of an infinite chain through C-H···O bonding. The crystal packing of both compounds is further stabilized by off-set π···π stacking interactions between phenyl rings, which is found stronger in MSBM as compared to in MSBT. Moreover, Hirshfeld surface exploration of the polymorphs was carried out, and the results were compared with the closely related literature structure. Accordingly, the supramolecular assembly of these polymorphs is mainly stabilized by noncovalent interactions or intermolecular interactions. Furthermore, a density functional theory (DFT) study was also carried out, which provided good support for the SC-XRD and Hirshfeld studies, suggesting the formation of both intramolecular and intermolecular interactions for both compounds.
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Affiliation(s)
- Mehreen Riaz
- Department
of Applied Chemistry, Government College
University Faisalabad, 38000 Faisalabad, Pakistan
| | - Akbar Ali
- Department
of Chemistry, Government College University
Faisalabad, 38000 Faisalabad, Pakistan
| | - Muhammad Ashfaq
- Department
of Physics, University of Sargodha, 40100 Sargodha, Pakistan
| | - Muhammad Ibrahim
- Department
of Applied Chemistry, Government College
University Faisalabad, 38000 Faisalabad, Pakistan
| | - Nadia Akram
- Department
of Chemistry, Government College University
Faisalabad, 38000 Faisalabad, Pakistan
| | | | - Aleksey Kuznetsov
- Departamento
de Química, Campus Santiago Vitacura, Universidad Técnica Federico Santa María, Vitacura 7660251, Chile
| | - Lyanne Rodríguez
- Department
of Clinical Biochemistry and Immunohaematology, Thrombosis Research
Center, Medical Technology School, Faculty of Health Sciences, Universidad de Talca, Talca 3460000, Chile
| | - Manal Y. Sameeh
- Chemistry
Department, Faculty of Applied Sciences, Al-Leith University College, Umm Al-Qura University, Makkah 24831, Saudi Arabia
| | - Mohammed A. Assiri
- Research
center for Advanced Materials Science (RCAMS), King Khalid University, P.O. Box 9004, Abha 61514, Saudi Arabia
- Department
of Chemistry, Faculty of Science, King Khalid
University, P.O. Box 9004, Abha 61413, Saudi Arabia
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Annusha TL, Jebamalar AS, Nirmala Jothi NS, Jeya Rajendran A, Vigneswari S, Sabari Girisun TC. Growth parameters and investigations on the structural, optical, mechanical, thermal and electrical properties of an l-proline guanidine carbonate single crystal. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.135155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2023]
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Ke Z, Fan X, Di Y, Chen F, Han X, Yang K, Li B. A Comprehensive Investigation into the Crystallology, Molecule, and Quantum Chemistry Properties of Two New Hydrous Long-Chain Dibasic Ammonium Salts CnH2n+8N2O6 (n = 35 and 37). Int J Mol Sci 2023; 24:ijms24065467. [PMID: 36982543 PMCID: PMC10052139 DOI: 10.3390/ijms24065467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 03/01/2023] [Accepted: 03/05/2023] [Indexed: 03/18/2023] Open
Abstract
Through the salification reaction of carboxylation, successful attachment of the long-chain alkanoic acid to the two ends of 1,3-propanediamine was realized, which enabled the doubling of the long-chain alkanoic acid carbon chain. Hydrous 1,3-propanediamine dihexadecanoate (abbreviated as 3C16) and 1,3-propanediamine diheptadecanoate (abbreviated as 3C17) were synthesized afterward, and their crystal structures were characterized by the X-ray single crystal diffraction technique. By analyzing their molecular and crystal structure, their composition, spatial structure, and coordination mode were determined. Two water molecules played important roles in stabilizing the framework of both compounds. Hirshfeld surface analysis revealed the intermolecular interactions between the two molecules. The 3D energy framework map presented the intermolecular interactions more intuitively and digitally, in which dispersion energy plays a dominant role. DFT calculations were performed to analyze the frontier molecular orbitals (HOMO–LUMO). The energy difference between the HOMO–LUMO is 0.2858 eV and 0.2855 eV for 3C16 and 3C17, respectively. DOS diagrams further confirmed the distribution of the frontier molecular orbitals of 3C16 and 3C17. The charge distributions in the compounds were visualized using a molecular electrostatic potential (ESP) surface. ESP maps indicated that the electrophilic sites are localized around the oxygen atom. The crystallographic data and parameters of quantum chemical calculation in this paper will provide data and theoretical support for the development and application of such materials.
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Affiliation(s)
- Zengbo Ke
- School of Materials Science and Chemical Engineering, Xi’an Technological University, Xi’an 710021, China
- College of Chemical Engineering and Modern Materials, Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, Shangluo University, Shangluo 726000, China
| | - Xinhui Fan
- School of Materials Science and Chemical Engineering, Xi’an Technological University, Xi’an 710021, China
- Correspondence: (X.F.); (Y.D.)
| | - Youying Di
- College of Chemical Engineering and Modern Materials, Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, Shangluo University, Shangluo 726000, China
- Correspondence: (X.F.); (Y.D.)
| | - Fengying Chen
- College of Chemical Engineering and Modern Materials, Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, Shangluo University, Shangluo 726000, China
| | - Xi Han
- College of Chemical Engineering and Modern Materials, Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, Shangluo University, Shangluo 726000, China
| | - Ke Yang
- School of Materials Science and Chemical Engineering, Xi’an Technological University, Xi’an 710021, China
| | - Bing Li
- School of Materials Science and Chemical Engineering, Xi’an Technological University, Xi’an 710021, China
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Mohammadi L, Hosseinifard M, Vaezi MR. Stabilization of Palladium-Nanoparticle-Decorated Postsynthesis-Modified Zr-UiO-66 MOF as a Reusable Heterogeneous Catalyst in C-C Coupling Reaction. ACS OMEGA 2023; 8:8505-8518. [PMID: 36910943 PMCID: PMC9996586 DOI: 10.1021/acsomega.2c07661] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 02/03/2023] [Indexed: 06/18/2023]
Abstract
Here we prepared a highly efficient and reusable catalyst by a step-by-step postsynthesis modification of UiO-66-NH2 metal-organic frameworks (MOFs) with nitrogen-rich organic ligands and used it as support for the preparation of UiO-66-NH2@cyanuric chloride@2-aminopyrimidine/PdNPs. The catalytic performance's results of UiO-66-NH2@cyanuric chloride@2-aminopyrimidine/PdNPs, UiO-66-NH2/PdNPs, and UiO-66-NH2@cyanuric chloride/PdNPs indicate high efficiency of the modulation of the microenvironment of the palladium NPs. The addition of N-rich organic ligands through postsynthesis modification caused a unique structure of the final composite in favor of the progress of the C-C coupling reaction. Various techniques, including FT-IR, XRD, SEM, TEM, EDS, and elemental mapping, were used to characterize UiO-66-NH2@cyanuric chloride@2-aminopyrimidine/PdNPs, indicating its successful preparation. Three C-C coupling reactions, including the Suzuki, Heck, and Sonogashira coupling reactions, were promoted using the produced catalyst. As a result of the postsynthesis modification (PSM), the proposed catalyst displays improved catalytic performance. In addition, the suggested catalyst was highly recyclable up to ten times without leaching of PdNPs.
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Affiliation(s)
- Leila Mohammadi
- Department
of Nano Technology and Advanced Materials, Materials and Energy Research Center, Karaj, Iran
| | | | - Mohammad Reza Vaezi
- Department
of Nano Technology and Advanced Materials, Materials and Energy Research Center, Karaj, Iran
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Hasanova S, Yolchueva EA, Mashadi AQ, Muhammad S, Ashfaq M, Muhammed ME, Munawar KS, Tahir MN, Al-Sehemi AG, Alarfaji SS. Synthesis, Characterization, Crystal Structures, and Supramolecular Assembly of Copper Complexes Derived from Nitroterephthalic Acid along with Hirshfeld Surface Analysis and Quantum Chemical Studies. ACS OMEGA 2023; 8:8530-8540. [PMID: 36910960 PMCID: PMC9996808 DOI: 10.1021/acsomega.2c07686] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Accepted: 02/08/2023] [Indexed: 06/18/2023]
Abstract
Two new Cu(II) carboxylate complexes, Cu-NTA and Cu-DNTA, were prepared by treating 2-nitroterephthalic acid with CuSO4·5H2O at room temperature. The synthesized complexes were characterized by elemental (CHN), FT-IR, and thermogravimetric analysis. The crystal structures of both complexes were explored by single crystal X-ray diffraction analysis, which inferred that the coordination geometry is slightly distorted octahedral and square pyramidal in Cu-NTA and Cu-DNTA, respectively. The non-covalent interactions that are the main feature of the supramolecular assembly were investigated by Hirshfeld surface analysis for both complexes. The propensity of each pair of chemical moieties involved in crystal-packing interactions was determined by the enrichment ratio. Quantum chemical computations were performed to optimize the molecular geometry of complex Cu-NTA and compared it with the experimental single crystal structure, which was found to be in sensible agreement with the experimental structure of the complex. The DFT method was used to see the potential of the selected Cu-NTA complex for linear and nonlinear optical properties. The static NLO polarizability <γ> of complex Cu-NTA was calculated to be 86.28 × 10-36 esu at M06 functional and 6-31G*/LANL2DZ basis set, which was rationally large to look for NLO applications of complex Cu-NTA. Additionally, the molecular electrostatic potential and frontier molecular orbitals were also computed with the same methodology to see electronic characteristics and ground-state electronic charge distributions.
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Affiliation(s)
| | | | - Aliyeva Qudrat Mashadi
- Institute
of Catalysis and Inorganic Chemistry, Azerbaijan
National Academy of Sciences, Baku AZ1143, Azerbaijan
| | - Shabbir Muhammad
- Department
of Chemistry, College of Science, King Khalid
University, P.O. Box 9004, Abha 61413, Saudi Arabia
| | - Muhammad Ashfaq
- Department
of Physics, University of Sargodha, Sargodha 40100, Pakistan
| | | | | | | | - Abdullah G. Al-Sehemi
- Department
of Chemistry, College of Science, King Khalid
University, P.O. Box 9004, Abha 61413, Saudi Arabia
| | - Saleh S. Alarfaji
- Department
of Chemistry, College of Science, King Khalid
University, P.O. Box 9004, Abha 61413, Saudi Arabia
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Kurbanova M, Ashfaq M, Tahir MN, Maharramov A, Dege N, Koroglu A. SYNTHESIS, CRYSTAL STRUCTURE, SUPRAMOLECULAR ASSEMBLY EXPLORATION BY HIRSHFELD SURFACE ANALYSIS AND COMPUTATIONAL STUDY OF 6-BROMO-2-OXO- 2H-CHROMENE-3-CARBONITRILE (BOCC). J STRUCT CHEM+ 2023. [DOI: 10.1134/s0022476623020142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/11/2023]
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Ali A, Din ZU, Ibrahim M, Ashfaq M, Muhammad S, Gull D, Tahir MN, Rodrigues-Filho E, Al-Sehemi AG, Suleman M. Acid catalyzed one-pot approach towards the synthesis of curcuminoid systems: unsymmetrical diarylidene cycloalkanones, exploration of their single crystals, optical and nonlinear optical properties. RSC Adv 2023; 13:4476-4494. [PMID: 36760294 PMCID: PMC9892888 DOI: 10.1039/d2ra07681k] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Accepted: 01/12/2023] [Indexed: 02/05/2023] Open
Abstract
In the present study crystalline unsymmetrical diarylidene ketone derivatives BNTP and BDBC have been prepared by two sequential acid catalyzed aldol condensation reactions in a one pot manner. The crystal structures of both compounds were confirmed by single crystal X-ray diffraction analysis which revealed the presence of H-bonding interactions of type C-H⋯O, along with weak C-H⋯π and weak π⋯π stacking interactions that are involved in the crystal stabilization of both organic compounds. Hirshfeld surface analysis is carried out for the broad investigation of the intermolecular interactions in both compounds. The quantum chemical investigation was performed on the optimized molecular geometries of BNTP and BDBC to calculate optical and nonlinear optical (NLO) properties. The density functional theory (DFT) study showed that the third-order NLO polarizabilities of compounds BNTP and BDBC are found to be 226.45 × 10-36 esu and 238.72 × 10-36 esu, respectively, which indicates noticeable good NLO response properties. Additionally, the BNTP and BDBC molecules also showed the HOMO-LUMO orbital gaps of 5.96 eV and 6.06 eV, respectively. Furthermore, the computation of UV-visible spectra of the titled compounds indicated a limited and/or no absorption above the 400 nm region, directing a good transparency and NLO property trade-off for both synthesized compounds that may play a significant contribution in the future for optoelectronic technologies.
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Affiliation(s)
- Akbar Ali
- Department of Chemistry, Government College University Faisalabad, 38000-FaisalabadPakistan
| | - Zia Ud Din
- LaBioMMi, Departamento de Química, Universidade Federal de São CarlosCP 676, São CarlosSP 13.565-905Brazil
| | - Muhammad Ibrahim
- Department of Applied Chemistry, Government College University Faisalabad Pakistan
| | - Muhammad Ashfaq
- Department of Physics, University of Sargodha Sargodha Pakistan
| | - Shabbir Muhammad
- Department of Chemistry, College of Science, King Khalid UniversityP.O. Box 9004Abha 61413Saudi Arabia
| | - Dania Gull
- Department of Chemistry, Government College University Faisalabad, 38000-FaisalabadPakistan
| | | | - Edson Rodrigues-Filho
- LaBioMMi, Departamento de Química, Universidade Federal de São CarlosCP 676, São CarlosSP 13.565-905Brazil
| | - Abdullah G. Al-Sehemi
- Department of Chemistry, College of Science, King Khalid UniversityP.O. Box 9004Abha 61413Saudi Arabia
| | - Muhammad Suleman
- Department of Chemistry, Riphah International University Faisalabad CampusPakistan
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