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Nulakani NVR, Ali MA. Unveiling the chemical kinetics of aminomethanol (NH 2CH 2OH): insights into O . H and O 2 photo-oxidation reactions and formamide dominance. Front Chem 2024; 12:1407355. [PMID: 38873406 PMCID: PMC11169873 DOI: 10.3389/fchem.2024.1407355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2024] [Accepted: 05/08/2024] [Indexed: 06/15/2024] Open
Abstract
Aminomethanol is released into the atmosphere through various sources, including biomass burning. In this study, we have expounded the chemical kinetics of aminomethanol in the reaction pathways initiated by the hydroxyl radical (O ˙ H) with the aid of ab initio//density functional theory (DFT) i.e., coupled-cluster theory (CCSD(T))//hybrid-DFT (M06-2X/6-311++G (3df, 3pd). We have explored various possible directions of theO ˙ H radical on aminomethanol, as well as the formation of distinct pre-reactive complexes. Our computational findings reveal that the H transfer necessitates activation energies ranging from 4.1 to 6.5 kcal/mol from the -CH2 group, 3.5-6.5 kcal/mol from the -NH2 group and 7-9.3 kcal/mol from the -OH group of three rotational conformers. The H transfer from -CH2, -NH2 and -OH exhibits an estimated total rate constant (k OH) of approximately 1.97 × 10-11 cm3 molecule-1 s-1 at 300 K. The branching fraction analysis indicates a pronounced dominance of C-centered NH2C ˙ HOH radicals with a favorability of 77%, surpassing the N-centeredN ˙ HCH2OH (20%) and O-centered NH2CH2O ˙ (3%) radicals. Moreover, our investigation delves into the oxidation of the prominently favored carbon-centered NH2C ˙ HOH radical through its interaction with atmospheric oxygen molecules. Intriguingly, our findings reveal that formamide (NH2CHO) emerges as the predominant product in the NH2C ˙ HOH + 3O2 reaction, eclipsing alternative outcomes such as amino formic acid (NH2COOH) and formimidic acid (HN = C(H)-OH). At atmospheric conditions pertinent to the troposphere, the branching fraction value for the formation of formamide is about 99%, coupled with a rate constant of 5.5 × 10-12 cm3 molecule-1 s-1. Finally, we have scrutinized the detrimental impact of formamide on the atmosphere. Interaction of formamide with atmospheric hydroxyl radicals could give rise to the production of potentially perilous compounds such as HNCO. Further, unreactedN ˙ HCH2OH radicals may initiate the formation of carcinogenic nitrosamines when reacting with trace N-oxides (namely, NO and NO2). This, in turn, escalates the environmental risk factors.
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Affiliation(s)
| | - Mohamad Akbar Ali
- Department of Chemistry, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
- Center for the Catalyst and Separations, Khalifa University of Science and Technology, Abu Dhabi, United Arab Emirates
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Nguyen LT, Hoang GHL, Tran UNP, Mai TVT, Nguyen HD, Huynh LK. Mechanistic and Kinetic Insights into OH-Initiated Atmospheric Oxidation of Hymexazol: A Computational Study. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:15138-15152. [PMID: 37782022 DOI: 10.1021/acs.est.2c03095] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/03/2023]
Abstract
Hymexazol is a volatile fungicide widely used in agriculture, causing its abundance in the atmosphere; thus, its atmospheric fate and conversion are of great importance when assessing its environmental impacts. Herein, we report a theoretical kinetic mechanism for the oxidation of hymexazol by OH radicals, as well as the subsequent reactions of its main products with O2 and then with NO by using the Rice-Ramsperger-Kassel-Marcus-based Master equation kinetic model on the potential energy surface explored at the ROCBS-QB3//M06-2X/aug-cc-pVTZ level. The predicted total rate constants ktotal(T, P) for the reaction between hymexazol and OH radicals show excellent agreement with scarcely available experimental values (e.g., 3.6 × 10-12 vs (4.4 ± 0.8) × 10-12 cm3/molecule/s at T = 300 K and P = 760 Torr); thus, the calculated kinetic parameters can be confidently used for modeling/simulation of N-heterocycle-related applications under atmospheric and even combustion conditions. The model shows that 3,4-dihydroxy-5-methyl-4,5-dihydro-1,2-oxazol-5-yl (IM2), 3,5-dihydroxy-5-methyl-4,5-dihydro-1,2-oxazol-4-yl (IM3), and (3-hydroxy-1,2-oxazol-5-yl)methyl (P8) are the main primary intermediates, which form the main secondary species of (3,4-dihydroxy-5-methyl-4,5-dihydro-1,2-oxazol-5-yl)dioxidanyl (IM4), (3,5-dihydroxy-5-methyl-4,5-dihydro-1,2-oxazol-4-yl)dioxidanyl (IM7), and ([(3-hydroxy-1,2-oxazol-5-yl)methyl]dioxidanyl (IM11), respectively, through the reactions with O2. The main secondary species then can react with NO to form the main tertiary species, namely, (3,4-dihydroxy-5-methyl-4,5-dihydro-1,2-oxazol-5-yl)oxidanyl (P19), (3,5-dihydroxy-5-methyl-4,5-dihydro-1,2-oxazol-4-yl)oxidanyl (P21), and [(3-hydroxy-1,2-oxazol-5-yl)methyl]oxidanyl (P23), respectively, together with NO2. Besides, hymexazol could be a persistent organic pollutant in the troposphere due to its calculated half-life τ1/2 of 13.7-68.1 h, depending on the altitude.
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Affiliation(s)
- Loc T Nguyen
- Vietnam National University, Ho Chi Minh City, Quarter 6, Linh Trung Ward, Thu Duc City, Ho Chi Minh City 700000, Vietnam
- School of Chemical and Environmental Engineering, International University, Quarter 6, Linh Trung Ward, Thu Duc City, Ho Chi Minh City 700000, Vietnam
| | - Gia-Huy L Hoang
- Vietnam National University, Ho Chi Minh City, Quarter 6, Linh Trung Ward, Thu Duc City, Ho Chi Minh City 700000, Vietnam
- School of Chemical and Environmental Engineering, International University, Quarter 6, Linh Trung Ward, Thu Duc City, Ho Chi Minh City 700000, Vietnam
| | - Uyen N-P Tran
- Vietnam National University, Ho Chi Minh City, Quarter 6, Linh Trung Ward, Thu Duc City, Ho Chi Minh City 700000, Vietnam
- School of Chemical and Environmental Engineering, International University, Quarter 6, Linh Trung Ward, Thu Duc City, Ho Chi Minh City 700000, Vietnam
| | - Tam V-T Mai
- Vietnam National University, Ho Chi Minh City, Quarter 6, Linh Trung Ward, Thu Duc City, Ho Chi Minh City 700000, Vietnam
- Molecular Science and Nano-Materials Lab, Institute for Computational Science and Technology, SBI Building, Quang Trung Software City, Tan Chanh Hiep Ward, Thu Duc City, Ho Chi Minh City 700000, Vietnam
- University of Science, 227 Nguyen Van Cu, Ward 4, District 5, Ho Chi Minh City 700000, Vietnam
| | - Huy D Nguyen
- Vietnam National University, Ho Chi Minh City, Quarter 6, Linh Trung Ward, Thu Duc City, Ho Chi Minh City 700000, Vietnam
- University of Science, 227 Nguyen Van Cu, Ward 4, District 5, Ho Chi Minh City 700000, Vietnam
| | - Lam K Huynh
- Vietnam National University, Ho Chi Minh City, Quarter 6, Linh Trung Ward, Thu Duc City, Ho Chi Minh City 700000, Vietnam
- School of Chemical and Environmental Engineering, International University, Quarter 6, Linh Trung Ward, Thu Duc City, Ho Chi Minh City 700000, Vietnam
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Dana AG, Johnson MS, Allen JW, Sharma S, Raman S, Liu M, Gao CW, Grambow CA, Goldman MJ, Ranasinghe DS, Gillis RJ, Payne AM, Li Y, Dong X, Spiekermann KA, Wu H, Dames EE, Buras ZJ, Vandewiele NM, Yee NW, Merchant SS, Buesser B, Class CA, Goldsmith F, West RH, Green WH. Automated reaction kinetics and network exploration (Arkane): A statistical mechanics, thermodynamics, transition state theory, and master equation software. INT J CHEM KINET 2023. [DOI: 10.1002/kin.21637] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2023]
Affiliation(s)
- Alon Grinberg Dana
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
- The Wolfson Department of Chemical Engineering and Grand Technion Energy Program (GTEP) Technion – Israel Institute of Technology Haifa Israel
| | - Matthew S. Johnson
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Joshua W. Allen
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Sandeep Sharma
- Department of Chemistry University of Colorado Boulder CO USA
| | - Sumathy Raman
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Mengjie Liu
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Connie W. Gao
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Colin A. Grambow
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Mark J. Goldman
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Duminda S. Ranasinghe
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Ryan J. Gillis
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - A. Mark Payne
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Yi‐Pei Li
- Department of Chemical Engineering National Taiwan University Taipei Taiwan
| | - Xiaorui Dong
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Kevin A. Spiekermann
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Haoyang Wu
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Enoch E. Dames
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Zachary J. Buras
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Nick M. Vandewiele
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Nathan W. Yee
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Shamel S. Merchant
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Beat Buesser
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | - Caleb A. Class
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
| | | | - Richard H. West
- Department of Chemical Engineering Northeastern University Boston Massachusetts USA
| | - William H. Green
- Department of Chemical Engineering Massachusetts Institute of Technology Cambridge Massachusetts USA
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Tao X, Shushkov P, Miller TF. Microcanonical rates from ring-polymer molecular dynamics: Direct-shooting, stationary-phase, and maximum-entropy approaches. J Chem Phys 2020; 152:124117. [DOI: 10.1063/1.5144307] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Affiliation(s)
- Xuecheng Tao
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - Philip Shushkov
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
| | - Thomas F. Miller
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA
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