1
|
Kumar S, Choudhary M. Structural and theoretical investigations, Hirshfeld surface analysis and anti-SARS CoV-2 of nickel (II) coordination complex. J Biomol Struct Dyn 2023; 41:402-422. [PMID: 34842499 DOI: 10.1080/07391102.2021.2006089] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
A nickel(II) Schiff base complex, [Ni(L)(DMF)](1), was synthesized by treating NiCl2.6H2O with an ONS-donor Schiff base ligand(H2L) derived from the condensation 3,5-Dichlorosalicylaldehyde and 4,4-Dimethyl-3-thiosemicarbazide in DMF. The geometry around the center metal ion in [Ni(L)(DMF)](1) was square planar as revealed by the data collection from diffraction studies. DFT calculations were performed on the complex to get a structure-property relationship. Hirshfeld surface analysis was also carried out in the crystal structure of nickel (II) Schiff base complex. Additionally, inspiring from recent developments to find a potential inhibitor for SARS-CoV-2 virus, we have also performed molecular docking study of [Ni(L)(DMF)](1) to see if our novel complex show affinity for main protease (Mpro) of SARS-CoV-2 Mpro (PDB ID: 6LZE). Interestingly, the results are found quite encouraging where the binding affinity and inhibition constant was found to be -6.6 kcal/mol and 2.358 µM, respectively, for the best docked confirmation of complex [Ni(L)(DMF)](1) with Mpro protein. This binding affinity is reasonably well as compared to recently known antiviral drugs. For instance, the binding affinity of complex [Ni(L)(DMF)](1) is found to be better than that of recently docking results of anti-SARS-CoV-2 drugs like chloroquine (-6.293 kcal/mol), hydroxychloroquine (-5.573 kcal/mol) and remdesivir (-6.352 kcal/mol) when targeted to the active-site of SARS-CoV-2 Mpro. Besides this, molecular docking against G25K GTP-nucleotide binding protein (PDB ID: 1A4R) was also studied. We believe that current results can intrigue not only for the biomedical community but also for the materials chemists who are engaged to explore the application coordination complexes. Communicated by Ramaswamy H. Sarma.
Collapse
Affiliation(s)
- Sunil Kumar
- Department of Chemistry, National Institute of Technology Patna, Patna, Bihar, India
| | - Mukesh Choudhary
- Department of Chemistry, National Institute of Technology Patna, Patna, Bihar, India
| |
Collapse
|
2
|
Scarpelli F, La Deda M, Godbert N, Marino N, Crispini A, Aiello I. The strange case of metal coordination in disubstituted-biquinolines: competition between ligands and formation of a hybrid organic/inorganic Cu(II)/Cu(I) ternary cocrystal. J COORD CHEM 2022. [DOI: 10.1080/00958972.2022.2135994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Francesca Scarpelli
- MAT-INLAB (Laboratorio di Materiali Molecolari Inorganici), Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, Arcavacata di Rende, (CS), Italy
| | - Massimo La Deda
- MAT-INLAB (Laboratorio di Materiali Molecolari Inorganici), Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, Arcavacata di Rende, (CS), Italy
| | - Nicolas Godbert
- MAT-INLAB (Laboratorio di Materiali Molecolari Inorganici), Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, Arcavacata di Rende, (CS), Italy
| | - Nadia Marino
- MAT-INLAB (Laboratorio di Materiali Molecolari Inorganici), Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, Arcavacata di Rende, (CS), Italy
| | - Alessandra Crispini
- MAT-INLAB (Laboratorio di Materiali Molecolari Inorganici), Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, Arcavacata di Rende, (CS), Italy
| | - Iolinda Aiello
- MAT-INLAB (Laboratorio di Materiali Molecolari Inorganici), Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria, Arcavacata di Rende, (CS), Italy
- CNR NANOTEC-Istituto di Nanotecnologia U.O.S. Cosenza, Arcavacata di Rende, (CS), Italy
| |
Collapse
|
3
|
Zhao Z, Han X, Liu K, Zhao L, Liu Q. Six Fluorene-Based N-Heterocyclic Carbene Silver(I) Complexes: Structural Study and Recognition for Cu 2+. Organometallics 2022. [DOI: 10.1021/acs.organomet.2c00178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Zhixiang Zhao
- Tianjin Key Laboratory of Structure and Performance for Functional Molecules, College of Chemistry, Tianjin Normal University, Tianjin 300387, P. R. China
| | - Xingjun Han
- Tianjin Key Laboratory of Structure and Performance for Functional Molecules, College of Chemistry, Tianjin Normal University, Tianjin 300387, P. R. China
| | - Kun Liu
- Tianjin Key Laboratory of Structure and Performance for Functional Molecules, College of Chemistry, Tianjin Normal University, Tianjin 300387, P. R. China
| | - Lixuan Zhao
- Tianjin Key Laboratory of Structure and Performance for Functional Molecules, College of Chemistry, Tianjin Normal University, Tianjin 300387, P. R. China
| | - Qingxiang Liu
- Tianjin Key Laboratory of Structure and Performance for Functional Molecules, College of Chemistry, Tianjin Normal University, Tianjin 300387, P. R. China
| |
Collapse
|
4
|
Alexandropoulos DI, Kong F, Lombardi F, Horton PN, Coles SJ, Bogani L. A manganese (II) dimer bearing the reduced derivatives of nitronyl nitroxides. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
|
5
|
P M, Balraj V, V R. Synthesis, structural-spectral characterization and theoretical studies of Pyridinium-4-carbohydrazide (2R,3R)-2,3-dihydroxybutanedioate. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130365] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
6
|
Gonçalves IK, Oliveira WX, de Almeida FB, Marinho MV, do Pim WD, Silva-Caldeira PP. The versatile coordination chemistry of 1,3-benzenedicarboxylate in the last 20 years: An investigation from the coordination modes to spectroscopic insights. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115068] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
|
7
|
A triorganotin(IV) cocrystal with pyridinic phosphoramide: crystal structure and DFT calculations. CHEMICAL PAPERS 2021. [DOI: 10.1007/s11696-020-01461-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
|
8
|
Li JX, Du ZX, Zhang LL, Liu DL, Pan QY. Doubly mononuclear cocrystal and oxalato-bridged binuclear copper compounds containing flexible 2-((3,5,6-trichloropyridin-2-yl)oxy)acetate tectons: Synthesis, crystal analysis and magnetic properties. Inorganica Chim Acta 2020. [DOI: 10.1016/j.ica.2020.119890] [Citation(s) in RCA: 74] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
9
|
A new 1D Zn(II) coordination polymer containing 2-amino-4,6-dimethoxypyrimidine ligand: crystal structure, Hirshfeld surface analysis, and physicochemical studies. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2020.128309] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
10
|
Sran BS, Sharma S, Pointillart F, Cador O, Hundal G. Field-Induced Single Molecular Magnetism and Photoluminescence in Rare Cocrystals of Isomorphic Lanthanide(III) Coordination Compounds with Fully Substituted Pyridine-4-carboxamide Ligand. Inorg Chem 2020; 59:9227-9238. [PMID: 32538622 DOI: 10.1021/acs.inorgchem.0c01134] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Balkaran Singh Sran
- Department of Chemistry, UGC Sponsored-Centre for Advanced Studies-II, Guru Nanak Dev University, Amritsar, 143005 Punjab, India
| | - Sanyog Sharma
- Department of Chemistry, UGC Sponsored-Centre for Advanced Studies-II, Guru Nanak Dev University, Amritsar, 143005 Punjab, India
| | - Fabrice Pointillart
- Institut des Sciences Chimiques de Rennes, UMR 6226 CNRS, Université de Rennes 1, 35042 Rennes Cedex, France
| | - Olivier Cador
- Institut des Sciences Chimiques de Rennes, UMR 6226 CNRS, Université de Rennes 1, 35042 Rennes Cedex, France
| | - Geeta Hundal
- Department of Chemistry, UGC Sponsored-Centre for Advanced Studies-II, Guru Nanak Dev University, Amritsar, 143005 Punjab, India
| |
Collapse
|