The Rise of Toroidal Electrodynamics and Spectroscopy

Identifying PE2 and PE5 Proteins from Existing Mass Spectrometry Data Using pFind

The Chromosome-Centric Human Proteome Project (C-HPP) aims to identify all proteins encoded by the human genome. Currently, the human proteome still contains approximately 2000 PE2-PE5 proteins, referring to annotated coding genes that lack sufficient protein-level evidence. During the past 10 years, it has been increasingly difficult to identify PE2-PE5 proteins in C-HPP approaches due to the limited occurrence. Therefore, we proposed that reanalyzing massive MS data sets in repository with newly developed algorithms may increase the occurrence of the peptides of these proteins. In this study, we downloaded 1000 MS data sets via the ProteomeXchange database. Using pFind software, we identified peptides referring to 1788 PE2-PE5 proteins. Among them, 11 PE2 and 16 PE5 proteins were identified with at least 2 peptides, and 12 of them were identified using 2 peptides in a single data set, following the criteria of the HPP guidelines. We found translation evidence for 16 of the 11 PE2 and 16 PE5 proteins in our RNC-seq data, supporting their existence. The properties of the PE2 and PE5 proteins were similar to those of the PE1 proteins. Our approach demonstrated that mining PE2 and PE5 proteins in massive data repository is still worthy, and multidata set peptide identifications may support the presence of PE2 and PE5 proteins or at least prompt additional studies for validation. Extremely high throughput could be a solution to finding more PE2 and PE5 proteins.

Nondiffracting supertoroidal pulses and optical "Kármán vortex streets"

Supertoroidal light pulses, as space-time nonseparable electromagnetic waves, exhibit unique topological properties including skyrmionic configurations, fractal-like singularities, and energy backflow in free space, which however do not survive upon propagation. Here, we introduce the non-diffracting supertoroidal pulses (NDSTPs) with propagation-robust skyrmionic and vortex field configurations that persists over arbitrary propagation distances. Intriguingly, the field structure of NDSTPs has a similarity with the von Kármán vortex street, a pattern of swirling vortices in fluid and gas dynamics with staggered singularities that can stably propagate forward. NDSTPs will be of interest as directed channels for information and energy transfer applications.

Quantum control of flying doughnut terahertz pulses

The ability to manipulate the multiple properties of light diversifies light-matter interaction and light-driven applications. Here, using quantum control, we introduce an approach that enables the amplitude, sign, and even configuration of the generated light fields to be manipulated in an all-optical manner. Following this approach, we demonstrate the generation of "flying doughnut" terahertz (THz) pulses. We show that the single-cycle THz pulse radiated from the dynamic ring current has an electric field structure that is azimuthally polarized and that the space- and time-resolved magnetic field has a strong, isolated longitudinal component. We apply the flying doughnut pulse for a spectroscopic measurement of the water vapor in ambient air. Pulses such as these will serve as unique probes for spectroscopy, imaging, telecommunications, and magnetic materials.