Adenosine deaminase biosensor combining cationic conjugated polymer-based FRET with deoxyguanosine-based photoinduced electron transfer

Conjugated Polymers for Aptasensing Applications

Rapid and specific assaying of molecules that report on a pathophysiological condition, environmental pollution, or drug concentration is pivotal for establishing efficient and accurate diagnostic systems. One of the main components required for the construction of these systems is the recognition element (receptor) that can identify target analytes. Oligonucleotide switching structures, or aptamers, have been widely studied as selective receptors that can precisely identify targets in different analyzed matrices with minimal interference from other components in an antibody-like recognition process. These aptasensors, especially when integrated into sensing platforms, enable a multitude of sensors that can outperform antibody-based sensors in terms of flexibility of the sensing strategy and ease of deployment to areas with limited resources. Research into compounds that efficiently enhance signal transduction and provide a suitable platform for conjugating aptamers has gained huge momentum over the past decade. The multifaceted nature of conjugated polymers (CPs), notably their versatile electrical and optical properties, endows them with a broad range of potential applications in optical, electrical, and electrochemical signal transduction. Despite the substantial body of research demonstrating the enhanced performance of sensing devices using doped or nanostructure-embedded CPs, few reviews are available that specifically describe the use of conjugated polymers in aptasensing. The purpose of this review is to bridge this gap and provide a comprehensive description of a variety of CPs, from a historical viewpoint, underpinning their specific characteristics and demonstrating the advances in biosensors associated with the use of these conjugated polymers.

Split aptamer based sensing platform for adenosine deaminase detection by fluorescence resonance energy transfer

In this paper, a split aptamer based fluorescence resonance energy transfer (FRET) platform was constructed for the determination of adenosine deaminase (ADA) activity by using gold nanoclusters (AuNCs) and gold nanoparticles (AuNPs). A single adenosine triphosphate (ATP) aptamer was split into two fragments (referred to as P1 and P2). P1 was covalently attached to the AuNCs at the 5' end (P1-AuNCs), and P2 was labeled with AuNPs at the 3' end (P2-AuNPs). In the presence of ATP, ATP bound with the two fragments with high affinity to link P1-AuNCs and P2-AuNPs together, thus the fluorescence of P1-AuNCs was quenched via FRET from P1-AuNCs to P2-AuNPs. With the addition of ADA, ATP was transformed into inosine triphosphate (ITP), and then P1 and P2 were released to cause the fluorescence recovery of the system. So a split aptamer based FRET platform for ADA detection can be established via the fluorescence intensity change of the system. This platform showed a good linear relationship between the fluorescence intensity and ADA concentration in the range of 2-120 U L^-1, and the limit of detection (LOD) was 0.72 U L^-1. Moreover, the detection of ATP in human serum sample demonstrated the accuracy and applicability of the method for ADA detection in real sample.

Simple One-Pot Preparation of a Rapid Response AIE Fluorescent Metal-Organic Framework

Luminogenic materials, particularly those that have turn-on response by sensing the analytes, are highly regarded as optical instruments, sensing material, fluorescent probes, etc. However, most of these materials are only usable in dilute form and often show the self-quenching effect at high concentrations. The use of light-emitting AIE-based materials (aggregation-induced emission) is the solution of this problem. The rigid structure of these active fluorescence ligands, which contains several aromatic rings attached to each other, does not lose its fluorescence properties by increasing the concentration. Unlike other AIE ligands, which have a complex or multistep synthetic route, here, we present a simple one-pot method for in situ synthesis of the AIE ligand and the metal-organic framework (MOF) contained therein. Presence of metal nodes having varied outer-shell electron configurations affects the fluorescence intensity of these materials and, thus, both high and low emissive "turn on" MOFs were readily acquired. Based on the possible interactions between the free nitrogens on the ligand and the phenolic compounds, the MOFs enable highly selective and sensitive detection of phenol derivatives in several seconds with low detection limits (less than 65 nM for 4-aminophenol and 120 nM for phenol) through turn-on emission fluorescence.

Repeat-length variation in a wheat cellulose synthase-like gene is associated with altered tiller number and stem cell wall composition

The tiller inhibition gene (tin) that reduces tillering in wheat (Triticum aestivum) is also associated with large spikes, increased grain weight, and thick leaves and stems. In this study, comparison of near-isogenic lines (NILs) revealed changes in stem morphology, cell wall composition, and stem strength. Microscopic analysis of stem cross-sections and chemical analysis of stem tissue indicated that cell walls in tin lines were thicker and more lignified than in free-tillering NILs. Increased lignification was associated with stronger stems in tin plants. A candidate gene for tin was identified through map-based cloning and was predicted to encode a cellulose synthase-like (Csl) protein with homology to members of the CslA clade. Dinucleotide repeat-length polymorphism in the 5'UTR region of the Csl gene was associated with tiller number in diverse wheat germplasm and linked to expression differences of Csl transcripts between NILs. We propose that regulation of Csl transcript and/or protein levels affects carbon partitioning throughout the plant, which plays a key role in the tin phenotype.

A zwitterionic 1D/2D polymer co-crystal and its polymorphic sub-components: a highly selective sensing platform for HIV ds-DNA sequences

Polymorphic compounds {[Cu(dcbb)₂(H₂O)₂]·10H₂O}_n (2, 1D chain), [Cu(dcbb)₂]_n (3, 2D layer) and their co-crystal {[Cu(dcbb)₂(H₂O)][Cu(dcbb)₂]₂}_n (4) have been prepared from the reaction of [Na(dcbb)(H₂O)]_n (1) with Cu(NO₃)₂·3H₂O at different temperatures.

A water-stable metal–organic framework of a zwitterionic carboxylate with dysprosium: a sensing platform for Ebolavirus RNA sequences

A 3D Dy-based metal–organic framework (MOF) 1 was synthesized. Compound 1 can interact with the probe DNA to form a P-DNA@1 system. This system can be used as an effective fluorescent sensing platform for the detection of Ebolavirus RNA.

G-Tetraplex-Induced FRET within Telomeric Repeat Sequences Using (Py) A-(Per) A as Energy Donor-Acceptor Pair

G-tetraplex induced fluorescence resonance energy transfer (FRET) within telomeric repeat sequences has been studied using a nucleoside-tethered FRET pair embedded in the human telomeric G-quadruplex forming sequence (5'-A GGG TT(Py) A GGG TT(Per) A GGG TTA GGG-3', Py=pyrene, Per=perylene). Conformational change from a single strand to an anti-parallel G-quadruplex leads to FRET from energy donor ((Py) A) to acceptor ((Per) A). The distance between the FRET donor/acceptor partners was controlled by changing the number of G-quartet spacer units. The FRET efficiency decreases with increase in G-quartet units. Overall findings indicate that this could be further used for the development of FRET-based sensing and measurement techniques.