1
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Li X, Zheng S, Li Y, Ding J, Qin W. Effectively facilitating the degradation of chloramphenicol by the synergism of Shewanella oneidensis MR-1 and the metal-organic framework. JOURNAL OF HAZARDOUS MATERIALS 2023; 454:131545. [PMID: 37148794 DOI: 10.1016/j.jhazmat.2023.131545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 04/14/2023] [Accepted: 04/29/2023] [Indexed: 05/08/2023]
Abstract
Electroactive bacteria (EAB) and metal oxides are capable of synergistically removing chloramphenicol (CAP). However, the effects of redox-active metal-organic frameworks (MOFs) on CAP degradation with EAB are not yet known. This study investigated the synergism of iron-based MOFs (Fe-MIL-101) and Shewanella oneidensis MR-1 on CAP degradation. 0.5 g/L Fe-MIL-101 with more possible active sites led to a three-fold higher CAP removal rate in the synergistic system with MR-1 (initial bacterial concentration of 0.2 at OD600), and showed a superior catalytic effect than exogenously added Fe(III)/Fe(II) or magnetite. Mass spectrometry revealed that CAP was transformed into smaller molecular weight and less toxic metabolites in cultures. Transcriptomic analysis showed that Fe-MIL-101 enhanced the expression of genes related to nitro and chlorinated contaminants degradation. Additionally, genes encoding hydrogenases and c-type cytochromes associated with extracellular electron transfer were significantly upregulated, which may contribute to the simultaneous bioreduction of CAP both intracellularly and extracellularly. These results indicated that Fe-MIL-101 can be used as a catalyst to synergize with EAB to effectively facilitate CAP degradation, which might shed new light on the application in the in situ bioremediation of antibiotic-contaminated environments.
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Affiliation(s)
- Xin Li
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, Shandong 264003, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Shiling Zheng
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, Shandong 264003, PR China; Qingdao National Laboratory for Marine Science and Technology, Qingdao, Shandong 266237, PR China.
| | - Yinhao Li
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, Shandong 264003, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Jiawang Ding
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, Shandong 264003, PR China; Qingdao National Laboratory for Marine Science and Technology, Qingdao, Shandong 266237, PR China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, Shandong 266071, PR China.
| | - Wei Qin
- CAS Key Laboratory of Coastal Environmental Processes and Ecological Remediation, Yantai Institute of Coastal Zone Research (YIC), Chinese Academy of Sciences (CAS), Shandong Key Laboratory of Coastal Environmental Processes, YICCAS, Yantai, Shandong 264003, PR China; Qingdao National Laboratory for Marine Science and Technology, Qingdao, Shandong 266237, PR China; Center for Ocean Mega-Science, Chinese Academy of Sciences, Qingdao, Shandong 266071, PR China
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2
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Sanfui S, Chakraborty P, Garribba E, Rath SP. Diheme cytochromes: Effect of mixed-axial ligation on the electronic structure and electrochemical properties with cobalt porphyrin dimer. J Inorg Biochem 2023; 240:112109. [PMID: 36592509 DOI: 10.1016/j.jinorgbio.2022.112109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 12/11/2022] [Accepted: 12/15/2022] [Indexed: 12/24/2022]
Abstract
A series of six-coordinate diCo(III) porphyrin dimers, as synthetic analogues of diheme cytochromes, have been reported here having bis(imidazole), bis(pyridine) and mixed thiophenolate-pyridine/imidazole axial ligands. In the X-ray structures of bis(imidazole) and bis(pyridine) complexes, the axial ligands are in perpendicular orientation while they are parallelly oriented in their monomeric analog. The porphyrin rings are also highly ruffle-distorted in dimer but planar in monomer which reflect the effect of intramolecular interaction between two Co(porphyrin) units in dimers. In the X-ray structure of diCo(III) thiophenolate-pyridine mixed-ligated complex, the axial Co-S and Co-N(py) distances are 2.256(1) and 2.063(2) Å, respectively. The Co-N(py) distance of 2.063(2) Å is much longer than the distances of 1.961(3) and 1.972(3) Å observed in bis(pyridine) complex and the Co-S distance is larger than Co-N(py) in the mixed ligated complex which results in a displacement of Co by 0.15 Å towards the pyridine ligand from the mean porphyrin plane. Indeed, this is the first X-ray structure of a metalloporphyrin with mixed thiophenolate-pyridine axial ligands. The effect of mixed-axial ligation is demonstrated by a blue-shift of the Soret band in the UV-visible spectroscopy and also a positive shift of the Co(III)/Co(II) redox couple as compared to their bis(pyridine) analogue. The redox potentials are shifted to a large negative value just upon replacing the metal from iron to cobalt. The present investigation emphasizes the role of axial ligation, metal ions, and also the effect of heme-heme interaction in controlling the spectral and electrochemical properties.
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Affiliation(s)
- Sarnali Sanfui
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - Paulami Chakraborty
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - Eugenio Garribba
- Dipartimento di Medicina, Chirurgia e Farmacia, Università di Sassari, Viale San Pietro, I-07100 Sassari, Italy
| | - Sankar Prasad Rath
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India.
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3
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Sil D, Khan FST, Rath SP. Effect of intermacrocyclic interactions: Modulation of metal spin-state in oxo/hydroxo/fluoro-bridged diiron(III)/dimanganese(III) porphyrin dimers. ADVANCES IN INORGANIC CHEMISTRY 2023. [DOI: 10.1016/bs.adioch.2022.08.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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4
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Khan FST, Samanta D, Chandel D, Shah SJ, Rath SP. Heme-Heme Interactions in Diheme Cytochromes: Effect of Mixed-Axial Ligation on the Electronic Structure and Electrochemical Properties. Inorg Chem 2021; 60:12870-12882. [PMID: 34370470 DOI: 10.1021/acs.inorgchem.1c01215] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Diheme cytochromes, the simplest members in the multiheme family, play substantial biochemical roles in enzymatic catalysis as well as in electron transfer. A series of diiron(III) porphyrin dimers have been synthesized as active site analogues of diheme cytochromes. The complexes contain six-coordinated iron(III) having thiophenol and imidazole at the fifth and sixth coordination sites, respectively. The iron centers in the complexes have been found to be in a low-spin state, as confirmed through solid-state Mössbauer and electron paramagnetic resonance (EPR) spectroscopic investigations. Mössbauer quadrupole splitting of complexes having mixed ligands is substantially larger than that observed when both axial ligands are the same. Rhombic types of EPR spectra with narrow separation between gx, gy, and gz clearly distinguish heme thiolate coordination compared to bis(imidazole)-ligated low-spin heme centers. The redox potential in diheme cytochromes has been found to be tuned by interheme interactions along with the nature of axial ligands. The effect of mixed-axial ligation within the diiron(III) porphyrin dimers is demonstrated by a positive shift in the Fe(III)/Fe(II) redox couple upon thiophenolate coordination compared to their bis(imidazole) analogues. The pKa of the imidazole also decides the extent of the shift for the Fe(III)/Fe(II) couple, while the potential of the mixed-ligated diiron(III) porphyrin dimer is more positive compared to their monomeric analogue. A variation of around 1.1 V for the Fe(III)/Fe(II) redox potential in the diiron(III) porphyrin dimer can be achieved with the combined effect of axial ligation and a metal spin state, while such a large variation in the redox potential, compared to their monomeric analogues, is attributed to the heme-heme interactions observed in dihemes. Moreover, theoretical calculations also support the experimental shifts in the redox potential values.
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Affiliation(s)
| | - Deepannita Samanta
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - Dolly Chandel
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - Syed Jehanger Shah
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - Sankar Prasad Rath
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
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5
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Singh AK, Rath SP. Intermacrocyclic Interactions upon Stepwise Oxidations in a Monometallic Porphyrin Dimer: Ring versus Metal‐Center Oxidations and Effect of Counter Anions. Chemistry 2020; 26:14405-14418. [DOI: 10.1002/chem.202002188] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2020] [Revised: 06/15/2020] [Indexed: 12/22/2022]
Affiliation(s)
- Akhil Kumar Singh
- Department of Chemistry Indian Institute of Technology Kanpur Kanpur 208016 India
| | - Sankar Prasad Rath
- Department of Chemistry Indian Institute of Technology Kanpur Kanpur 208016 India
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6
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Nishi M, Hayata Y, Hoshino N, Hanasaki N, Akutagawa T, Matsuda M. Intermolecular interactions of tetrabenzoporphyrin- and phthalocyanine-based charge-transfer complexes. Dalton Trans 2019; 48:17723-17728. [PMID: 31660554 DOI: 10.1039/c9dt03653a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The effect of molecular modification on the intermolecular interactions in tetrabenzoporphyrin-based charge transfer complexes is reported. TPP[FeIII(tbp)Cl2]2, TPP[CoIII(tbp)Cl2]2 and TPP[CoIII(tbp)Br2]2 (TPP = tetraphenylphosphonium and tbp = tetrabenzoporphyrin) were synthesized and their crystal structures were compared to those of the reported TPP[MIII(tbp)(CN)2]2, TPP[FeIII(tbp)Br2]2 and TPP[MIII(Pc)L2]2 complexes (Pc = phthalocyanine; and L = CN, Cl or Br). The prepared CT complexes were isostructural to reported systems. However, their intermolecular interactions were found to depend on the combination of the macrocyclic (Mc) and axial ligands (L). In Pc-based systems, the overlap integral between HOMOs of Pc decreased with the increase in the size of the axial ligand, which indicated that the intermolecular interactions in Pc-based systems were dominated by repulsive interactions. On the other hand, in tbp-based systems, attractive and repulsive interactions competed with each other. Furthermore, charge transport properties were found to depend on the central metal ion as well as the combination of Mc and L, which suggested that minor molecular modifications to porphyrin complexes will cause drastic changes in both inter- and intramolecular interactions.
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Affiliation(s)
- Miki Nishi
- Department of Chemistry, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto 860-8555, Japan.
| | - Yuki Hayata
- Department of Chemistry, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto 860-8555, Japan.
| | - Norihisa Hoshino
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Noriaki Hanasaki
- Department of Physics, Osaka University, 1-1 Machikaneyama, Toyonaka, Osaka 560-0043, Japan
| | - Tomoyuki Akutagawa
- Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
| | - Masaki Matsuda
- Department of Chemistry, Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto 860-8555, Japan.
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7
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Khan FST, Kumar A, Lai D, Rath SP. Ethene-bridged diiron porphyrin dimer as models of diheme cytochrome c: Structure-function correlation and modulation of heme redox potential. Inorganica Chim Acta 2019. [DOI: 10.1016/j.ica.2018.09.047] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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8
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Khan FST, Banerjee S, Kumar D, Rath SP. Diheme Cytochrome c: Structure–Function Correlation and Effect of Heme−Heme Interactions. Inorg Chem 2018; 57:11498-11510. [DOI: 10.1021/acs.inorgchem.8b01368] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Sayantani Banerjee
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur-208016, India
| | - Devesh Kumar
- Department of Physics, School for Physical and Decision Sciences, Babasaheb Bhimrao Ambedkar University, Lucknow-226025, India
| | - Sankar Prasad Rath
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur-208016, India
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9
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Modulation of iron spin in ethane-bridged diiron(III) porphyrin dimer: anion dependent spin state switching. J CHEM SCI 2018. [DOI: 10.1007/s12039-018-1488-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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10
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Ponomarenko N, Niklas J, Pokkuluri PR, Poluektov O, Tiede DM. Electron Paramagnetic Resonance Characterization of the Triheme Cytochrome from Geobacter sulfurreducens. Biochemistry 2018; 57:1722-1732. [DOI: 10.1021/acs.biochem.7b00917] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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11
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Lai D, Khan FST, Rath SP. Multiheme proteins: effect of heme–heme interactions. Dalton Trans 2018; 47:14388-14401. [DOI: 10.1039/c8dt00518d] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
This Frontier illustrates a brief personal account on the effect of heme–heme interactions in dihemes which thereby discloses some of the evolutionary design principles involved in multiheme proteins for their diverse structures and functions.
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Affiliation(s)
- Dipti Lai
- Department of Chemistry
- Indian Institute of Technology Kanpur
- Kanpur-208016
- India
| | | | - Sankar Prasad Rath
- Department of Chemistry
- Indian Institute of Technology Kanpur
- Kanpur-208016
- India
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12
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Pandit YA, Sanfui S, Rath SP. Intermacrocyclic Interaction Triggers Facile One-Pot Synthesis of a Chlorin-Porphyrin Heterodimer. Chemistry 2017; 23:13415-13422. [DOI: 10.1002/chem.201701943] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2017] [Indexed: 01/16/2023]
Affiliation(s)
- Younis Ahmad Pandit
- Department of Chemistry; Indian Institute of Technology Kanpur; Kanpur 208016 India
| | - Sarnali Sanfui
- Department of Chemistry; Indian Institute of Technology Kanpur; Kanpur 208016 India
| | - Sankar Prasad Rath
- Department of Chemistry; Indian Institute of Technology Kanpur; Kanpur 208016 India
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13
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Oxo- and hydroxo-bridged diiron(III) porphyrin dimers: Inorganic and bio-inorganic perspectives and effects of intermacrocyclic interactions. Coord Chem Rev 2017. [DOI: 10.1016/j.ccr.2017.02.008] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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14
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Khan FST, Guchhait T, Sasmal S, Rath SP. Hydroxo-bridged diiron(iii) and dimanganese(iii) bisporphyrins: modulation of metal spins by counter anions. Dalton Trans 2017; 46:1012-1037. [DOI: 10.1039/c6dt03829h] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
A brief account has been presented on how the inter-heme interactions in μ-hydroxo diiron(iii) bisporphyrins and counter anions can induce significant change in the structure and properties including the iron spin state without affecting the overall topology.
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Affiliation(s)
| | - Tapas Guchhait
- Department of Chemistry
- Indian Institute of Technology Kanpur
- Kanpur-208016
- India
| | - Sujit Sasmal
- Department of Chemistry
- Indian Institute of Technology Kanpur
- Kanpur-208016
- India
| | - Sankar Prasad Rath
- Department of Chemistry
- Indian Institute of Technology Kanpur
- Kanpur-208016
- India
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15
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Kokhan O, Ponomarenko NS, Pokkuluri PR, Schiffer M, Mulfort KL, Tiede DM. Bidirectional Photoinduced Electron Transfer in Ruthenium(II)-Tris-bipyridyl-Modified PpcA, a Multi-heme c-Type Cytochrome from Geobacter sulfurreducens. J Phys Chem B 2015; 119:7612-24. [PMID: 25731703 DOI: 10.1021/jp511558f] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
PpcA, a tri-heme cytochrome c7 from Geobacter sulfurreducens, was investigated as a model for photosensitizer-initiated electron transfer within a multi-heme "molecular wire" protein architecture. Escherichia coli expression of PpcA was found to be tolerant of cysteine site-directed mutagenesis, demonstrated by the successful expression of natively folded proteins bearing cysteine mutations at a series of sites selected to vary characteristically with respect to the three -CXXCH- heme binding domains. The introduced cysteines readily reacted with Ru(II)-(2,2'-bpy)2(4-bromomethyl-4'-methyl-2,2'-bipyridine) to form covalently linked constructs that support both photo-oxidative and photo-reductive quenching of the photosensitizer excited state, depending upon the initial heme redox state. Excited-state electron-transfer times were found to vary from 6 × 10(-12) to 4 × 10(-8) s, correlated with the distance and pathways for electron transfer. The fastest rate is more than 10(3)-fold faster than previously reported for photosensitizer-redox protein constructs using amino acid residue linking. Clear evidence for inter-heme electron transfer within the multi-heme protein is not detected within the lifetimes of the charge-separated states. These results demonstrate an opportunity to develop multi-heme c-cytochromes for investigation of electron transfer in protein "molecular wires" and to serve as frameworks for metalloprotein designs that support multiple-electron-transfer redox chemistry.
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Affiliation(s)
- Oleksandr Kokhan
- †Chemical Sciences and Engineering Division and ‡Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, United States
| | - Nina S Ponomarenko
- †Chemical Sciences and Engineering Division and ‡Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, United States
| | - P Raj Pokkuluri
- †Chemical Sciences and Engineering Division and ‡Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, United States
| | - Marianne Schiffer
- †Chemical Sciences and Engineering Division and ‡Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, United States
| | - Karen L Mulfort
- †Chemical Sciences and Engineering Division and ‡Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, United States
| | - David M Tiede
- †Chemical Sciences and Engineering Division and ‡Biosciences Division, Argonne National Laboratory, 9700 South Cass Avenue, Argonne, Illinois 60439, United States
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Sil D, Rath SP. An ethane-bridged porphyrin dimer as a model of di-heme proteins: inorganic and bioinorganic perspectives and consequences of heme–heme interactions. Dalton Trans 2015; 44:16195-211. [DOI: 10.1039/c5dt00947b] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
A brief account of our recent efforts on how inter-heme interactions can possibly change the structure and functional properties of the individual heme centers in a highly flexible ethane-bridged porphyrin dimer has been presented.
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Affiliation(s)
- Debangsu Sil
- Department of Chemistry
- Indian Institute of Technology Kanpur
- Kanpur 208016
- India
| | - Sankar Prasad Rath
- Department of Chemistry
- Indian Institute of Technology Kanpur
- Kanpur 208016
- India
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17
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Sil D, Khan FST, Rath SP. Axial Thiophenolate Coordination on Diiron(III)bisporphyrin: Influence of Heme–Heme Interactions on Structure, Function and Electrochemical Properties of the Individual Heme Center. Inorg Chem 2014; 53:11925-36. [DOI: 10.1021/ic5011677] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Debangsu Sil
- Department of Chemistry, Indian Institute of Technology Kanpur
, Kanpur-208016, India
| | | | - Sankar Prasad Rath
- Department of Chemistry, Indian Institute of Technology Kanpur
, Kanpur-208016, India
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18
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Wu Y, Liu T, Li X, Li F. Exogenous electron shuttle-mediated extracellular electron transfer of Shewanella putrefaciens 200: electrochemical parameters and thermodynamics. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:9306-9314. [PMID: 25058026 DOI: 10.1021/es5017312] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Despite the importance of exogenous electron shuttles (ESs) in extracellular electron transfer (EET), a lack of understanding of the key properties of ESs is a concern given their different influences on EET processes. Here, the ES-mediated EET capacity of Shewanella putrefaciens 200 (SP200) was evaluated by examining the electricity generated in a microbial fuel cell. The results indicated that all the ESs substantially accelerated the current generation compared to only SP200. The current and polarization parameters were linearly correlated with both the standard redox potential (E(ES)(0)) and the electron accepting capacity (EAC) of the ESs. A thermodynamic analysis of the electron transfer from the electron donor to the electrode suggested that the EET from c-type cytochromes (c-Cyts) to ESs is a crucial step causing the differences in EET capacities among various ESs. Based on the derived equations, both E(ES)(0) and EAC can quantitatively determine potential losses (ΔE) that reflect the potential loss of the ES-mediated EET. In situ spectral kinetic analysis of ES reduction by c-Cyts in a living SP200 suspension was first investigated with the E(ES), E(c-Cyt), and ΔE values being calculated. This study can provide a comprehensive understanding of the role of ESs in EET.
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Affiliation(s)
- Yundang Wu
- Guangdong Key Laboratory of Agricultural Environment Pollution Integrated Control, Guangdong Institute of Eco-Environmental and Soil Sciences , Guangzhou, P. R. China
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19
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Yamamoto HM. Sheathed nanowires aligned by crystallographic periodicity: a possibility of cross-bar wiring in three-dimensional space. CrystEngComm 2014. [DOI: 10.1039/c3ce41015c] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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20
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Dey S, Rath SP. Syn–anti conformational switching in an ethane-bridged Co(ii)bisporphyrin induced by external stimuli: effects of inter-macrocyclic interactions, axial ligation and chemical and electrochemical oxidations. Dalton Trans 2014; 43:2301-14. [DOI: 10.1039/c3dt52784k] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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21
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Bhowmik S, Dey S, Sahoo D, Rath SP. Unusual Stabilization of an Intermediate Spin State of Iron upon the Axial Phenoxide Coordination of a Diiron(III)-Bisporphyrin: Effect of Heme-Heme Interactions. Chemistry 2013; 19:13732-44. [DOI: 10.1002/chem.201301242] [Citation(s) in RCA: 51] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2013] [Indexed: 11/06/2022]
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22
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Patra R, Sahoo D, Dey S, Sil D, Rath SP. Switching Orientation of Two Axial Imidazole Ligands between Parallel and Perpendicular in Low-Spin Fe(III) and Fe(II) Nonplanar Porphyrinates. Inorg Chem 2012; 51:11294-305. [DOI: 10.1021/ic300229u] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ranjan Patra
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur-208016, India
| | - Dipankar Sahoo
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur-208016, India
| | - Soumyajit Dey
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur-208016, India
| | - Debangsu Sil
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur-208016, India
| | - Sankar Prasad Rath
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur-208016, India
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23
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Takayama Y, Taketa-Sato M, Komori H, Morita K, Kang SJ, Higuchi Y, Akutsu H. Role of π-Electron Systems in Stabilization of the Oxidized Tetraheme Architecture in Cytochromec3. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2011. [DOI: 10.1246/bcsj.20110039] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Qian Y, Paquete CM, Louro RO, Ross DE, Labelle E, Bond DR, Tien M. Mapping the iron binding site(s) on the small tetraheme cytochrome of Shewanella oneidensis MR-1. Biochemistry 2011; 50:6217-24. [PMID: 21682327 DOI: 10.1021/bi2005015] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In the model microbe Shewanella oneidensis, multi-heme proteins are utilized for respiratory metabolism where metals serve as the terminal electron acceptor. Among those is the periplasm-localized small tetraheme cytochrome (STC). STC has been extensively characterized structurally and electrochemically to which electron flow in and out of the protein has been modeled. However, until the present work, no kinetic studies have been performed to probe the route of electron flow or to determine the iron-binding site on STC. Using iron chelated by EDTA, NTA, or citrate, we have used chemical modification, site-directed mutagenesis along with isothermal titration calorimetry (ITC), and stopped-flow measurements to identify the iron binding site of STC. Chemical modifications of STC revealed that carboxyl groups on STC are involved in binding of EDTA-Fe(3+). Scanning mutagenesis was performed on Asp and Glu to probe the putative iron-binding site on STC. Two STC mutants (D21N; D80N) showed ∼70% decrease in observed electron transfer rate constant with EDTA-Fe(3+) from transient-state kinetic measurements. The impaired reactivity of STC (D80N/D21N) with EDTA-Fe(3+) was further confirmed by a significant decrease (>10-fold) in iron binding affinity.
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Affiliation(s)
- Yufeng Qian
- Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
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Belen’kii L, Gramenitskaya V, Evdokimenkova Y. The Literature of Heterocyclic Chemistry, Part X, 2005–2007. ADVANCES IN HETEROCYCLIC CHEMISTRY 2011. [DOI: 10.1016/b978-0-12-385464-3.00001-7] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Lemouchi C, Simonov S, Zorina L, Gautier C, Hudhomme P, Batail P. Amino acid derivatives of perylenediimide and their N–H⋯O peptide bond dipoles-templated solid state assembly into stacks. Org Biomol Chem 2011; 9:8096-101. [DOI: 10.1039/c1ob06213a] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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El-Ghayoury A, Mézière C, Simonov S, Zorina L, Cobián M, Canadell E, Rovira C, Náfrádi B, Sipos B, Forró L, Batail P. A Neutral Zwitterionic Molecular Solid. Chemistry 2010; 16:14051-9. [DOI: 10.1002/chem.201001875] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Paquete CM, Louro RO. Molecular details of multielectron transfer: the case of multiheme cytochromes from metal respiring organisms. Dalton Trans 2009; 39:4259-66. [PMID: 20422082 DOI: 10.1039/b917952f] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Shewanella are facultative anaerobic bacteria of remarkable respiratory versatility that includes the dissimilatory reduction of metal ores. They contain a large number of multiheme c-type cytochromes that play a significant role in various anaerobic respiratory processes. Of all the cytochromes found in Shewanella, only the two most abundant periplasmic cytochromes, the small tetraheme cytochrome (STC) and flavocytochrome c(3) (Fcc(3)) have been structurally characterized. For these two proteins the molecular bases for their redox properties were determined using spectroscopic methods based on paramagnetic NMR, that allow the contribution of specific hemes to be discriminated. In this perspective these results are reviewed in the context of the continuing effort to understand the molecular mechanisms of electron transfer in the respiratory chains of these organisms.
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Takayama Y, Werbeck ND, Komori H, Morita K, Ozawa K, Higuchi Y, Akutsu H. Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3. Biochemistry 2008; 47:9405-15. [PMID: 18702516 DOI: 10.1021/bi8005708] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Tetraheme cytochrome c 3 (cyt c 3) exhibits extremely low reduction potentials and unique properties. Since axial ligands should be the most important factors for this protein, every axial histidine of Desulfovibrio vulgaris Miyazaki F cyt c 3 was replaced with methionine, one by one. On mutation at the fifth ligand, the relevant heme could not be linked to the polypeptide, revealing the essential role of the fifth histidine in heme linking. The fifth histidine is the key residue in the structure formation and redox regulation of a c-type cytochrome. A crystal structure has been obtained for only H25M cyt c 3. The overall structure was not affected by the mutation except for the sixth methionine coordination at heme 3. NMR spectra revealed that each mutated methionine is coordinated to the sixth site of the relevant heme in the reduced state, while ligand conversion takes place at hemes 1 and 4 during oxidation at pH 7. The replacement of the sixth ligand with methionine caused an increase in the reduction potential of the mutated heme of 222-244 mV. The midpoint potential of a triheme H52M cyt c 3 is higher than that of the wild type by approximately 50 mV, suggesting a contribution of the tetraheme architecture to the lowering of the reduction potentials. The hydrogen bonding of Thr24 with an axial ligand induces a decrease in reduction potential of approximately 50 mV. In conclusion, the bis-histidine coordination is strategically essential for the structure formation and the extremely low reduction potential of cyt c 3.
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Affiliation(s)
- Yuki Takayama
- Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita, Osaka 565-0871, Japan
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