Stereocontrol in cyclophane synthesis: a photochemical method to overlap aromatic rings

Construction of olefinic coordination polymer single crystal platforms: precise organic synthesis, in situ exploration of reaction mechanisms and beyond

Olefin [2+2] photocycloaddition reactions based on coordination-bond templates provide numerous advantages for the selective synthesis of cyclobutane compounds. This review outlines the recent advances in the design and construction of single crystal platforms of olefinic coordination polymers for precise organic synthesis, in situ exploration of reaction mechanisms, and possible developments as comprehensively as possible. Numerous examples are presented to illustrate how the arrangements of the olefin pairs influence the solid-state photoreactivity and examine the types of cyclobutane products. Furthermore, the photocycloaddition reaction mechanisms are investigated by combining advanced techniques such as single crystal X-ray diffraction, powder X-ray diffraction, nuclear magnetic resonance, infrared spectroscopy, fluorescence spectroscopy, laser scanning confocal microscopy and theoretical calculations. Finally, potential applications resulting from promising physicochemical properties before and after photoreactions are discussed, and existing challenges and possible solutions are also proposed.

A medium-firm drug-candidate library of cryptand-like structures on T7 phage: design and selection of a strong binder for Hsp90

We designed and synthesized a medium-firm drug-candidate library of cryptand-like structures possessing a randomized peptide linker on the bacteriophage T7. From the macrocyclic library with a 109 diversity, we obtained a binder toward a cancer-related protein (Hsp90) with an antibody-like strong affinity (KD = 62 nM) and the binding was driven by the enthalpy. The selected supramolecular ligand inhibited Hsp90 activity by site-specific binding outside of the well-known ATP-binding pocket on the N-terminal domain (NTD).

Photochemical reactions of metal complexes in the solid state

This perspective focusses on the solid-state reactivity and structural transformation driven by photochemical methods in discrete metal complexes, organometallic compounds, metallo-macrocycles and cages. Changes in the metal-metal bond distances, racemization of chiral centres, fusion of cages, formation of coordination polymers, expected [2 + 2] and [4 + 4] cycloaddition products, unusual phenyl-olefin dimerization, and linkage isomerization of -SO₂, -NO & -NO₂ ligands cause the structural transformations. Of these, [2 + 2] photo-cycloaddition reactions have been widely studied and the photoreactions are made possible by various supramolecular interactions including hydrogen bonds, metallophilic, ππ and C-Hπ interactions, ligand design and metallic clips to bring the reactive functional groups closely into correct orientation close to the transition state. These photoreactions are often accompanied by crystal bending, mechanical motion, and changes in the magnetic and photoluminescence properties. In several cases, the single crystals have been preserved at the end of the reactions, which are known as single-crystal-to-single-crystal (SCSC) reactions.

Controllable Fluorescence Switching of a Coordination Chain Based on the Photoinduced Single-Crystal-to-Single-Crystal Reversible Transformation of a syn-[2.2]Metacyclophane

The observation of a reversible chemical transformation corresponding to an external stimulus in the solid state is intriguing in the exploration of smart materials, which can potentially be applied in molecular machines, molecular switches, sensors, and data storage devices. The solid-state photodimerization reaction of 1,3-bis[2-(4-pyridyl)ethenyl]benzene (1,3-bpeb) in a one-dimensional coordination polymer {[Cd₂(1,3-bpeb)₂(4-FBA)₄]·H₂O}_n (4-FBA = 4-fluorobenzoate) with 365 nm UV light afforded syn-tetrakis(4-pyridyl)-1,2,9,10-diethano[2.2]metacyclophane (syn-tpmcp) in quantitative yield via a single-crystal-to-single-crystal (SCSC) transformation. Upon irradiation with 254 nm UV light, an SCSC conversion from syn-tpmcp to 1,3-bpeb was also achieved in quantitative yield within the syn-tpmcp-supported coordination polymer {[Cd₂(syn-tpmcp)(4-FBA)₄]·H₂O}_n. In particular, accompanied by the reversible transformation between 1,3-bpeb and syn-tpmcp, the coordination chain exhibits photocontrollable fluorescence-switching behavior, which makes this intelligent material an appealing candidate for practical applications.

Post-cycloaddition modification of a porous MOF for improved GC separation of ethanol and water

An olefin-containing porous framework undergoes [2 + 2] cycloaddition to give post-modified pore space, accompanied by turn-on luminescence upon light irradiation. The photochemical modification reinforces the supramolecular network and improves GC separation performance of ethanol and water.

Recent Advances in the Synthesis of Cyclobutanes by Olefin [2 + 2] Photocycloaddition Reactions

The [2 + 2] photocycloaddition is undisputedly the most important and most frequently used photochemical reaction. In this review, it is attempted to cover all recent aspects of [2 + 2] photocycloaddition chemistry with an emphasis on synthetically relevant, regio-, and stereoselective reactions. The review aims to comprehensively discuss relevant work, which was done in the field in the last 20 years (i.e., from 1995 to 2015). Organization of the data follows a subdivision according to mechanism and substrate classes. Cu(I) and PET (photoinduced electron transfer) catalysis are treated separately in sections 2 and 4 , whereas the vast majority of photocycloaddition reactions which occur by direct excitation or sensitization are divided within section 3 into individual subsections according to the photochemically excited olefin.

Structurally Flexible C₃-Symmetric Receptors for Molecular Recognition and Their Self-Assembly Properties

The bioinspired design and synthesis of building blocks and their assemblies by the supramolecular approach has ever fascinated scientists to utilize such artificial systems for numerous purposes. Flexibility is a basic feature of natural systems. However, in artificial systems this is difficult to control, especially if there is no preorganization of the component(s) of a system. We have designed and synthesized a series of C3 -symmetric N-bridged flexible receptors and successfully utilized them to selectively entrap the notorious and toxic nitrate anion in aqueous medium. This was the first report of highest binding affinity for the nitrate anion in aqueous medium. An impressive self-sorting phenomenon of reversibly formed hydrogen-bonded capsules, which self-assembled from flexible tripodal receptors having branches of similar size and bearing the same amide functionality, has been disclosed. Encapsulated nitrate anion has been further utilized for the photochemical [2+2] cycloaddition reaction for the synthesis of strained four-membered ring structures through dynamic self-assembly. In this Personal Account, we summarize these results showing the utility of naturally inspired flexibility in artificial systems.

Construction of a crown ether-like supramolecular library by conjugation of genetically-encoded peptide linkers displayed on bacteriophage T7

By using the 10BASE_d-T, we have synthesized a crown ether-like macrocyclic library possessing randomized peptide linkers on bacteriophage T7.

Synthesis, photochemistry, and photophysics of butadiene derivatives: influence of the methyl group on the molecular structure and photoinduced behavior

Novel butadiene derivatives display diverse photochemistry and photophysics. Excitation of 2-methyl-1-(o-vinylphenyl)-4-phenylbutadiene leads to the dihydronaphthalene derivative, whereas photolysis of the corresponding model o-methyl analogue results in the formation of the naphthalene-like derivative, deviating from the nonmethylated analogue of the prior starting compound and producing benzobi- and -tricyclic compounds. The effect of the methyl substituents is even more dramatic in the case of the dibutadienes. The parent unsubstituted compound undergoes photoinduced intramolecular cycloaddition giving benzobicyclo[3.2.1]octadiene, whereas the photochemical reaction of the corresponding dimethylated derivative shows only geometrical isomerization due to the steric effect of the substituents. Methyl groups on the butadiene backbones reduce the extent of conjugation, causing a blue-shift of the characteristic absorption band. The fluorescence efficiency is dramatically decreased, as a consequence of nonplanarity and reduced rigidity of the molecules due to the crowding by the methyl and phenyl groups together. Four molecules of very similar structures show dramatically different photoinduced behavior, revealing how changes of the nature and position of the substituents are valuable in understanding the photophysics and photochemistry of these types of compounds.

Supramolecular control of reactivity in the solid state: from templates to ladderanes to metal-organic frameworks

We describe how reactivity can be controlled in the solid state using molecules and self-assembled metal-organic complexes as templates. Being able to control reactivity in the solid state bears relevance to synthetic chemistry and materials science. The former offers a promise to synthesize molecules that may be impossible to realize from the liquid phase while also taking advantage of the benefits of conducting highly stereocontrolled reactions in a solvent-free environment (i.e., green chemistry). The latter provides an opportunity to modify bulk physical properties of solids (e.g., optical properties) through changes to molecular structure that result from a solid-state reaction. Reactions in the solid state have been difficult to control owing to frustrating effects of molecular close packing. The high degree of order provided by the solid state also means that the templates can be developed to determine how principles of supramolecular chemistry can be generally employed to form covalent bonds. The paradigm of synthetic chemistry employed by Nature is based on integrating noncovalent and covalent bonds. The templates assemble olefins via either hydrogen bond or coordination-driven self-assembly for intermolecular [2 + 2] photodimerizations. The olefins are assembled within discrete, or finite, self-assembled complexes, which effectively decouples chemical reactivity from effects of crystal packing. The control of the solid-state assembly process affords the supramolecular construction of targets in the form of cyclophanes and ladderanes. The targets form stereospecifically, in quantitative yield, and in gram amounts. Both [3]- and [5]-ladderanes have been synthesized. The ladderanes are comparable to natural ladderane lipids, which are a new and exciting class of natural products recently discovered in anaerobic marine bacteria. The organic templates function as either hydrogen bond donors or hydrogen bond acceptors. The donors and acceptors generate cyclobutanes lined with pyridyl and carboxylic acid groups, respectively. The metal-organic templates are based on Zn(II) and Ag(I) ions. The reactivity involving Zn(II) ions is shown to affect optical properties in the form of solid-state fluorescence. The solids based on both the organic and metal-organic templates undergo rare single-crystal-to-single-crystal reactions. We also demonstrate how the cyclobutanes obtained from this method can be applied as novel polytopic ligands of metallosupramolecular assemblies (e.g., self-assembled capsules) and materials (e.g., metal-organic frameworks). Sonochemistry is also used to generate nanostructured single crystals of the multicomponent solids or cocrystals based on the organic templates. Collectively, our observations suggest that the organic solid state can be integrated into more mainstream settings of synthetic organic chemistry and be developed to construct functional crystalline solids.

Intramolecular Singlet and Triplet Excimers of Triply Bridged [3.3.n](3,6,9)Carbazolophanes

Intermoiety electronic interactions in the singlet and triplet excimer states of triply bridged [3.3.n](3,6,9)carbazolophanes ([3.3.n]Cz, n=3-6) were studied by emission and transient absorption measurements. In these [3.3.n]Cz molecules, the dihedral angle and the separation distance r between fully overlapped two carbazole rings change systematically from nearly parallel (n=3, r=3.35 A) to oblique (n=6, r=4.03 A). In rigid glass at 77 K, [3.3.n]Cz (n=3, 4) (r<4 A) exhibited red-shifted and structureless excimer fluorescence and phosphorescence while [3.3.n]Cz (n=5, 6) (r>4 A) exhibited monomer-like vibrational fluorescence and phosphorescence. In solution at 130 K, all [3.3.n]Cz molecules exhibited an excimeric fluorescence band while [3.3.5]Cz still exhibited monomer-like phosphorescence. Transient absorption spectra measured at 294 K exhibited local excitation and charge-transfer bands for all [3.3.n]Cz molecules in the excited singlet and triplet states, suggesting that not only singlet but also triplet excimers of carbazole are formed at room temperature. Furthermore, the singlet-triplet energy gap decreased with the decrease in n, suggesting that electrons are effectively delocalized over the two carbazole moieties. These findings showed that both singlet and triplet excimers of carbazole are formed with a separation distance shorter than about 4 A and are most stable in the parallel-sandwich structure and that the configurational mixing between exciton resonance and charge resonance states plays an essential role in the formation of singlet and triplet excimers of carbazole.

Supramolecular Chemistry in Water

Supramolecular chemistry in water is a constantly growing research area because noncovalent interactions in aqueous media are important for obtaining a better understanding and control of the major processes in nature. This Review offers an overview of recent advances in the area of water-soluble synthetic receptors as well as self-assembly and molecular recognition in water, through consideration of the functionalities that are used to increase the water solubility, as well as the supramolecular interactions and approaches used for effective recognition of a guest and self-assembly in water. The special features and applications of supramolecular entities in aqueous media are also described.

Intramolecular Excimer Emission of Triply Bridged [3.3.n](3,6,9)Carbazolophanes

The photophysical properties of a series of triply bridged [3.3.n](3,6,9)carbazolophanes ([3.3.n]Cz, n = 3, 4, 5, 6) were studied as a model compound for a fully overlapped carbazole excimer. In these [3.3.n]Cz molecules, a plane angle of the two carbazole moieties changed systematically from nearly parallel to oblique, with increases in the length of the methylene chain n bridging at the 9-position of each carbazole ring. Absorption bands of [3.3.n]Cz showed the blue-shift and the splitting for (1)L(a) <-- (1)A and (1)L(b) <-- (1)A transition bands of the reference carbazole monomer, respectively. These spectral changes in [3.3.n]Cz were explained by Kasha's molecular exciton theory with the distance r and dihedral angle theta between the carbazole moieties in the ground state. In both liquid and glass matrixes, [3.3.n]Cz showed intramolecular excimer emission. The emission peak wavelength changed from 409 nm (n = 6) to 480 nm (n = 3) depending on r in the ground state. The dependence of the peak wavelength on r clearly showed that relative configurations of carbazole moieties in the ground state were preserved even in the excimer states. The smaller radiative rate of the excimer emission than the reference monomer was explained by the dimer symmetry of [3.3.n]Cz.

Synthesis and Fluorescence Spectra of Oxa[3.n]phenanthrenophanes

[reaction: see text]. Novel photostable oxa[3.n](3,9)- and [3.3](3,10)phenanthrenophanes (n = 3, 4) bearing trimethylene-type linkage(s) were successfully synthesized by the intramolecular acid-catalyzed etherification of the corresponding precursor diols. syn-Oxa[3.3](3,10)phenanthrenophane afforded the most red-shifted excimer fluorescence (lambda(max) = 432 nm) among the phenanthrenophanes so far prepared.

Synthesis and complexing properties of [2.n](2,6)pyridinocrownophanes

[2.n](2,6)Pyridinocrownophanes (3a-e) were efficiently prepared by intramolecular [2 + 2] photocycloaddition of vinylpyridine derivatives under irradiation using a 400-W high-pressure mercury lamp through a Pyrex filter. They were of cis-configuration with respect to the cyclobutane ring, which was proven by the specific methine proton NMR resonances at delta 3.98-4.08. From ESI-MS analysis 3a-e were found to form 1:1 complexes with Ag+ cation. In a liquid-liquid extraction, 3 showed the highest affinity toward Ag+ cation among several heavy metal nitrates. In this series, 3c possessing four ethereal oxygen atoms was found to show the highest Ag+ affinity, according to the liquid-liquid extraction and determination of stability constant with the cation. The photoreactivity of precursor vinylpyridines is discussed by the predictor gamma(r(c)) proposed by Caldwell.

Synthesis and Photochemistry of ?,??-Di(2-furyl)-Substitutedo-Divinylbenzenes: Intra- and/or Intermolecular Cycloaddition as an Effect of Annelation

New heteroaryl-substituted o-divinylbenzenes, 2,2'-(1,2-phenylenedivinylene)difuran (9), 2,2'-(1,2-phenylenedivinylene)bisbenzo[b]furan (10), and 2,2'-(1,2-phenylenedivinylene)bisnaphtho[2,1-b]furan (11), were prepared and irradiated at various concentrations; intramolecular photocycloaddition and intermolecular [2+2] twofold photoaddition reactions took place to give bicyclo[3.2.1]octadiene derivatives 12-14 and cyclophane derivatives 15-17, respectively. Compound 11 was the most selective of these o-divinylbenzenes, which, owing to pi-pi intra- or intermolecular complexation, gave only the exo-bicyclo[3.2.1]octadiene derivative 14 at low concentrations, and only the cyclophane derivative 17 at high concentrations.