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Liu YJ. Understanding the complete bioluminescence cycle from a multiscale computational perspective: A review. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C: PHOTOCHEMISTRY REVIEWS 2022. [DOI: 10.1016/j.jphotochemrev.2022.100537] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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2
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Li Y, Jin C, Xu H, Wu W, Wang Y, Wu J, Liu T, Wan G, Yue X, Bu X. Identification of 2-Benzylidene-tetralone Derivatives as Highly Potent and Reversible Firefly Luciferase Inhibitors. ACS Med Chem Lett 2022; 13:304-311. [PMID: 35178187 PMCID: PMC8842144 DOI: 10.1021/acsmedchemlett.1c00671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 01/14/2022] [Indexed: 11/28/2022] Open
Abstract
The extensive applications of Firefly luciferase (Fluc) in numerous biological, biomedical, and clinical investigations rendered an urgent need for efficient and biocompatible Fluc inhibitors for the construction of novel assay platforms. Herein we describe the identification of 2-benzylidene-tetralone derivatives as highly potent and reversible Firefly luciferase inhibitors by competing with d-luciferin. The most active compound 48 was found to have >7000 fold higher potency (IC50 = 0.25 nM) than that of the well-known luciferase inhibitor resveratrol (IC50 = 1.9 μM) biochemically with sub- to low nanomolar IC50 values, and it can efficiently block the Fluc generated bioluminescence in vivo.
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Affiliation(s)
- Yunzhi Li
- School
of Pharmaceutical Sciences, Sun Yat-sen
University, Guangzhou 510006, China
| | - Chaoying Jin
- School
of Pharmaceutical Sciences, Sun Yat-sen
University, Guangzhou 510006, China
| | - Huiying Xu
- School
of Pharmaceutical Sciences, Sun Yat-sen
University, Guangzhou 510006, China
| | - Weijian Wu
- School
of Pharmaceutical Sciences, Sun Yat-sen
University, Guangzhou 510006, China
| | - Youqiao Wang
- School
of Pharmaceutical Sciences, Sun Yat-sen
University, Guangzhou 510006, China
| | - Jiaxin Wu
- School
of Pharmaceutical Sciences, Sun Yat-sen
University, Guangzhou 510006, China
| | - Tingyu Liu
- State
Key Laboratory of Oncology in South China, Collaborative Innovation
Center for Cancer Medicine, Sun Yat-sen
University Cancer Center, Guangzhou 510060, China
| | - Guohui Wan
- School
of Pharmaceutical Sciences, Sun Yat-sen
University, Guangzhou 510006, China
| | - Xin Yue
- Department
of Radiation Oncology, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou 510080, China,Institute
of Precision Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou 510080, China,
| | - Xianzhang Bu
- School
of Pharmaceutical Sciences, Sun Yat-sen
University, Guangzhou 510006, China,. Tel and fax: 020-39943054
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3
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Boaro A, Ageitos L, Torres M, Bartoloni FH, de la Fuente-Nunez C. Light-Emitting Probes for Labeling Peptides. CELL REPORTS. PHYSICAL SCIENCE 2020; 1:100257. [PMID: 34396352 PMCID: PMC8360326 DOI: 10.1016/j.xcrp.2020.100257] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Peptides are versatile biopolymers composed of 2-100 amino acid residues that present a wide range of biological functions and constitute potential therapies for numerous diseases, partly due to their ability to penetrate cell membranes. However, their mechanisms of action have not been fully elucidated due to the lack of appropriate tools. Existing light-emitting probes are limited by their cytotoxicity and large size, which can alter peptide structure and function. Here, we describe the available fluorescent, bioluminescent, and chemiluminescent probes for labeling peptides, with a focus on minimalistic options.
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Affiliation(s)
- Andreia Boaro
- Machine Biology Group, Departments of Psychiatry and Microbiology, Institute for Biomedical Informatics, Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, and Department of Bioengineering, University of Pennsylvania, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Avenida dos Estados, 5001, Santo André, São Paulo 09210-580, Brazil
| | - Lucía Ageitos
- Machine Biology Group, Departments of Psychiatry and Microbiology, Institute for Biomedical Informatics, Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, and Department of Bioengineering, University of Pennsylvania, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
- Centro de Investigacións Científicas Avanzadas (CICA) e Departamento de Química, Facultade de Ciencias, Universidade da Coruña, Calle de la Maestranza, 9, A Coruña 15071, Spain
| | - Marcelo Torres
- Machine Biology Group, Departments of Psychiatry and Microbiology, Institute for Biomedical Informatics, Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, and Department of Bioengineering, University of Pennsylvania, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
| | - Fernando Heering Bartoloni
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Avenida dos Estados, 5001, Santo André, São Paulo 09210-580, Brazil
| | - Cesar de la Fuente-Nunez
- Machine Biology Group, Departments of Psychiatry and Microbiology, Institute for Biomedical Informatics, Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, and Department of Bioengineering, University of Pennsylvania, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
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Moutsiopoulou A, Broyles D, Joda H, Dikici E, Kaur A, Kaifer A, Daunert S, Deo SK. Bioluminescent Protein-Inhibitor Pair in the Design of a Molecular Aptamer Beacon Biosensing System. Anal Chem 2020; 92:7393-7398. [PMID: 32410446 PMCID: PMC7955708 DOI: 10.1021/acs.analchem.0c00518] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Although bioluminescent molecular beacons designed around resonance quenchers have shown higher signal-to-noise ratios and increased sensitivity compared with fluorescent beacon systems, bioluminescence quenching is still comparatively inefficient. A more elegant solution to inefficient quenching can be realized by designing a competitive inhibitor that is structurally very similar to the native substrate, resulting in essentially complete substrate exclusion. In this work, we designed a conjugated anti-interferon-γ (IFN-γ) molecular aptamer beacon (MAB) attached to a bioluminescent protein, Gaussia luciferase (GLuc), and an inhibitor molecule with a similar structure to the native substrate coelenterazine. To prove that a MAB can be more sensitive and have a better signal-to-noise ratio, a bioluminescence-based assay was developed against IFN-γ and provided an optimized, physiologically relevant detection limit of 1.0 nM. We believe that this inhibitor approach may provide a simple alternative strategy to standard resonance quenching in the development of high-performance molecular beacon-based biosensing systems.
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Affiliation(s)
- Angeliki Moutsiopoulou
- University of Miami, Leonard M. Miller School of Medicine, Department of Biochemistry and Molecular Biology, Miami, Florida 33136, United States
- University of Miami, Department of Chemistry, Coral Gables, Florida 33146, United States
| | - David Broyles
- University of Miami, Leonard M. Miller School of Medicine, Department of Biochemistry and Molecular Biology, Miami, Florida 33136, United States
| | - Hamdi Joda
- University of Miami, Leonard M. Miller School of Medicine, Department of Biochemistry and Molecular Biology, Miami, Florida 33136, United States
| | - Emre Dikici
- University of Miami, Leonard M. Miller School of Medicine, Department of Biochemistry and Molecular Biology, Miami, Florida 33136, United States
| | - Avinash Kaur
- University of Miami, Leonard M. Miller School of Medicine, Department of Biochemistry and Molecular Biology, Miami, Florida 33136, United States
| | - Angel Kaifer
- University of Miami, Department of Chemistry, Coral Gables, Florida 33146, United States
| | - Sylvia Daunert
- University of Miami, Leonard M. Miller School of Medicine, Department of Biochemistry and Molecular Biology, Miami, Florida 33136, United States
- Dr. John T. Macdonald Foundation Biomedical Nanotechnology Institute of the University of Miami, Miami, Florida 33136, United States
- University of Miami Clinical and Translational Science Institute, Miami, Florida 33136, United States
| | - Sapna K Deo
- University of Miami, Leonard M. Miller School of Medicine, Department of Biochemistry and Molecular Biology, Miami, Florida 33136, United States
- Dr. John T. Macdonald Foundation Biomedical Nanotechnology Institute of the University of Miami, Miami, Florida 33136, United States
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5
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Emerging landscape of cell penetrating peptide in reprogramming and gene editing. J Control Release 2016; 226:124-37. [DOI: 10.1016/j.jconrel.2016.02.002] [Citation(s) in RCA: 52] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2015] [Revised: 01/31/2016] [Accepted: 02/01/2016] [Indexed: 12/11/2022]
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6
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Zhang H, Bai H, Jiang T, Ma Z, Cheng Y, Zhou Y, Du L, Li M. Quenching the firefly bioluminescence by various ions. Photochem Photobiol Sci 2016; 15:244-9. [DOI: 10.1039/c5pp00432b] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Some specific ions could selectively inhibit firefly luciferase while having a negligible effect on renilla luciferase, which may be used in the improved dual luciferase reporter gene assay.
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Affiliation(s)
- Huateng Zhang
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Haixiu Bai
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Tianyu Jiang
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Zhao Ma
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Yanna Cheng
- Department of Pharmacology
- School of Pharmacy
- Shandong University
- Jinan
- China
| | - Yubin Zhou
- Institute of Biosciences & Technology
- Texas A&M University Health Science Center
- Houston
- USA
| | - Lupei Du
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
| | - Minyong Li
- Department of Medicinal Chemistry
- Key Laboratory of Chemical Biology (MOE)
- School of Pharmacy
- Shandong University
- Jinan
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Turhanen PA, Vepsäläinen JJ. Preparation of useful building blocks, α-iodo- and bromoalkanols from cyclic ethers using the Dowex H +/NaX (X = I, Br) approach. RSC Adv 2016. [DOI: 10.1039/c5ra20813k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Novel method for preparation of α-iodo- and bromoalkanols directly from cyclic ethers has been developed. Prepared compounds are highly important building blocks in synthetic chemistry for the preparation of more complex molecules.
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Affiliation(s)
- Petri A. Turhanen
- University of Eastern Finland
- School of Pharmacy
- Biocenter Kuopio
- Kuopio
- Finland
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Bai H, Chen W, Wu W, Ma Z, Zhang H, Jiang T, Zhang T, Zhou Y, Du L, Shen Y, Li M. Discovery of a series of 2-phenylnaphthalenes as firefly luciferase inhibitors. RSC Adv 2015. [DOI: 10.1039/c5ra12886b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Abstract
A series of 2-phenylnaphthalenes as firefly luciferase inhibitors are reported. The most potent compound 5 showed good systemic inhibition in transgenic mice. Kinetic assay indicated 5 is competitive for aminoluciferin and noncompetitive for ATP.
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Turhanen PA. Synthesis of triple-bond-containing 1-hydroxy-1,1-bisphosphonic acid derivatives to be used as precursors in "click" chemistry: two examples. J Org Chem 2014; 79:6330-5. [PMID: 24915304 DOI: 10.1021/jo500831r] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The synthesis of novel (ω-alkynyl-1-hydroxy-1,1-diyl)bisphosphonic acid tetramethyl esters (1a-c), their P,P'-dimethyl esters (2a-c), and two trimethyl ester derivatives (3a and 3b) is reported. The prepared compounds can be attached to many kinds of molecules containing azide (-N3) functionalities using a "click" chemistry approach. As an example, bisphosphonate trimethyl ester 3a and P,P'-dimethyl ester 2b were attached to triethylene glycol to form triethylene glycol-bisphosphonate conjugates 4 and 5 as model compounds for further studies in, for example, nanoparticle targeting.
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Affiliation(s)
- Petri A Turhanen
- Biocenter Kuopio, School of Pharmacy, University of Eastern Finland , P.O. Box 1627, FIN-70211 Kuopio, Finland
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