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For: Galletto R, Rajendran S, Bujalowski W. Interactions of nucleotide cofactors with the Escherichia coli replication factor DnaC protein. Biochemistry 2000;39:12959-69. [PMID: 11041861 DOI: 10.1021/bi0012484] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Ujfalusi-Pozsonyi K, Bódis E, Nyitrai M, Kengyel A, Telek E, Pécsi I, Fekete Z, Varnyuné Kis-Bicskei N, Mas C, Moussaoui D, Pernot P, Tully MD, Weik M, Schirò G, Kapetanaki SM, Lukács A. ATP-dependent conformational dynamics in a photoactivated adenylate cyclase revealed by fluorescence spectroscopy and small-angle X-ray scattering. Commun Biol 2024;7:147. [PMID: 38307988 PMCID: PMC10837130 DOI: 10.1038/s42003-024-05842-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2023] [Accepted: 01/22/2024] [Indexed: 02/04/2024]  Open
2
A nexus of intrinsic dynamics underlies translocase priming. Structure 2021;29:846-858.e7. [PMID: 33852897 DOI: 10.1016/j.str.2021.03.015] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Revised: 03/06/2021] [Accepted: 03/25/2021] [Indexed: 11/22/2022]
3
Case BC, Hartley S, Osuga M, Jeruzalmi D, Hingorani MM. The ATPase mechanism of UvrA2 reveals the distinct roles of proximal and distal ATPase sites in nucleotide excision repair. Nucleic Acids Res 2019;47:4136-4152. [PMID: 30892613 PMCID: PMC6486640 DOI: 10.1093/nar/gkz180] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Revised: 03/02/2019] [Accepted: 03/18/2019] [Indexed: 01/20/2023]  Open
4
Singh SP, Kukshal V, De Bona P, Antony E, Galletto R. The mitochondrial single-stranded DNA binding protein from S. cerevisiae, Rim1, does not form stable homo-tetramers and binds DNA as a dimer of dimers. Nucleic Acids Res 2019;46:7193-7205. [PMID: 29931186 PMCID: PMC6101547 DOI: 10.1093/nar/gky530] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2018] [Accepted: 06/04/2018] [Indexed: 01/29/2023]  Open
5
Arias-Palomo E, Puri N, O'Shea Murray VL, Yan Q, Berger JM. Physical Basis for the Loading of a Bacterial Replicative Helicase onto DNA. Mol Cell 2019;74:173-184.e4. [PMID: 30797687 DOI: 10.1016/j.molcel.2019.01.023] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2018] [Revised: 12/26/2018] [Accepted: 01/15/2019] [Indexed: 02/02/2023]
6
Signal and binding. II. Converting physico-chemical responses to macromolecule-ligand interactions into thermodynamic binding isotherms. Biophys Chem 2016;222:25-40. [PMID: 28095332 DOI: 10.1016/j.bpc.2016.12.005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2016] [Revised: 12/26/2016] [Accepted: 12/26/2016] [Indexed: 11/23/2022]
7
Chodavarapu S, Kaguni JM. Replication Initiation in Bacteria. Enzymes 2016;39:1-30. [PMID: 27241926 DOI: 10.1016/bs.enz.2016.03.001] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
8
Felczak MM, Sage JM, Hupert-Kocurek K, Aykul S, Kaguni JM. Substitutions of Conserved Residues in the C-terminal Region of DnaC Cause Thermolability in Helicase Loading. J Biol Chem 2016;291:4803-12. [PMID: 26728455 DOI: 10.1074/jbc.m115.708586] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2015] [Indexed: 11/06/2022]  Open
9
Chodavarapu S, Jones AD, Feig M, Kaguni JM. DnaC traps DnaB as an open ring and remodels the domain that binds primase. Nucleic Acids Res 2015;44:210-20. [PMID: 26420830 PMCID: PMC4705694 DOI: 10.1093/nar/gkv961] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2015] [Accepted: 09/11/2015] [Indexed: 11/23/2022]  Open
10
Szymanski MR, Bujalowski PJ, Jezewska MJ, Gmyrek AM, Bujalowski W. The N-terminal domain of the Escherichia coli PriA helicase contains both the DNA- and nucleotide-binding sites. Energetics of domain--DNA interactions and allosteric effect of the nucleotide cofactors. Biochemistry 2011;50:9167-83. [PMID: 21888358 DOI: 10.1021/bi201100k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
11
Szymanski MR, Jezewska MJ, Bujalowski W. Binding of two PriA-PriB complexes to the primosome assembly site initiates primosome formation. J Mol Biol 2011;411:123-42. [PMID: 21641914 DOI: 10.1016/j.jmb.2011.05.029] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2011] [Revised: 05/17/2011] [Accepted: 05/18/2011] [Indexed: 11/19/2022]
12
The Escherichia coli PriA helicase-double-stranded DNA complex: location of the strong DNA-binding subsite on the helicase domain of the protein and the affinity control by the two nucleotide-binding sites of the enzyme. J Mol Biol 2010;402:344-62. [PMID: 20624397 DOI: 10.1016/j.jmb.2010.07.008] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2010] [Revised: 07/02/2010] [Accepted: 07/03/2010] [Indexed: 11/20/2022]
13
Interactions of the Escherichia coli primosomal PriB protein with the single-stranded DNA. Stoichiometries, intrinsic affinities, cooperativities, and base specificities. J Mol Biol 2010;398:8-25. [PMID: 20156448 DOI: 10.1016/j.jmb.2010.02.009] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2009] [Revised: 01/29/2010] [Accepted: 02/06/2010] [Indexed: 11/23/2022]
14
Andreeva IE, Roychowdhury A, Szymanski MR, Jezewska MJ, Bujalowski W. Mechanisms of interactions of the nucleotide cofactor with the RepA protein of plasmid RSF1010. Binding dynamics studied using the fluorescence stopped-flow method. Biochemistry 2009;48:10620-36. [PMID: 19747005 DOI: 10.1021/bi900940q] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
15
Gupta MK, Atkinson J, McGlynn P. DNA structure specificity conferred on a replicative helicase by its loader. J Biol Chem 2009;285:979-87. [PMID: 19880515 DOI: 10.1074/jbc.m109.072520] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
16
Roychowdhury A, Szymanski MR, Jezewska MJ, Bujalowski W. Escherichia coli DnaB helicase-DnaC protein complex: allosteric effects of the nucleotides on the nucleic acid binding and the kinetic mechanism of NTP hydrolysis. 3. Biochemistry 2009;48:6747-63. [PMID: 19432487 DOI: 10.1021/bi9000535] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
17
Roychowdhury A, Szymanski MR, Jezewska MJ, Bujalowski W. Interactions of the Escherichia coli DnaB-DnaC protein complex with nucleotide cofactors. 1. Allosteric conformational transitions of the complex. Biochemistry 2009;48:6712-29. [PMID: 19569622 PMCID: PMC3072150 DOI: 10.1021/bi900050x] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
18
Structural synergy and molecular crosstalk between bacterial helicase loaders and replication initiators. Cell 2008;135:623-34. [PMID: 19013274 DOI: 10.1016/j.cell.2008.09.058] [Citation(s) in RCA: 93] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2008] [Revised: 07/18/2008] [Accepted: 09/26/2008] [Indexed: 11/23/2022]
19
Hupert-Kocurek K, Sage JM, Makowska-Grzyska M, Kaguni JM. Genetic method to analyze essential genes of Escherichia coli. Appl Environ Microbiol 2007;73:7075-82. [PMID: 17873068 PMCID: PMC2074942 DOI: 10.1128/aem.01756-07] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
20
Ioannou C, Schaeffer PM, Dixon NE, Soultanas P. Helicase binding to DnaI exposes a cryptic DNA-binding site during helicase loading in Bacillus subtilis. Nucleic Acids Res 2006;34:5247-58. [PMID: 17003052 PMCID: PMC1636449 DOI: 10.1093/nar/gkl690] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
21
Aranovich A, Gdalevsky GY, Cohen-Luria R, Fishov I, Parola AH. Membrane-catalyzed nucleotide exchange on DnaA. Effect of surface molecular crowding. J Biol Chem 2006;281:12526-34. [PMID: 16517983 DOI: 10.1074/jbc.m510266200] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
22
Jezewska MJ, Galletto R, Bujalowski W. Interactions of the RepA helicase hexamer of plasmid RSF1010 with the ssDNA. Quantitative analysis of stoichiometries, intrinsic affinities, cooperativities, and heterogeneity of the total ssDNA-binding site. J Mol Biol 2004;343:115-36. [PMID: 15381424 DOI: 10.1016/j.jmb.2004.08.021] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2004] [Revised: 07/28/2004] [Accepted: 08/02/2004] [Indexed: 11/25/2022]
23
Galletto R, Jezewska MJ, Bujalowski W. Interactions of the Escherichia coli DnaB helicase hexamer with the replication factor the DnaC protein. Effect of nucleotide cofactors and the ssDNA on protein-protein interactions and the topology of the complex. J Mol Biol 2003;329:441-65. [PMID: 12767828 DOI: 10.1016/s0022-2836(03)00435-2] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
24
Davey MJ, Fang L, McInerney P, Georgescu RE, O’Donnell M. The DnaC helicase loader is a dual ATP/ADP switch protein. EMBO J 2002;21:3148-59. [PMID: 12065427 PMCID: PMC126063 DOI: 10.1093/emboj/cdf308] [Citation(s) in RCA: 119] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
25
Soultanas P. A functional interaction between the putative primosomal protein DnaI and the main replicative DNA helicase DnaB in Bacillus. Nucleic Acids Res 2002;30:966-74. [PMID: 11842108 PMCID: PMC100333 DOI: 10.1093/nar/30.4.966] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
26
Carr KM, Kaguni JM. Stoichiometry of DnaA and DnaB protein in initiation at the Escherichia coli chromosomal origin. J Biol Chem 2001;276:44919-25. [PMID: 11551962 DOI: 10.1074/jbc.m107463200] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
27
Ludlam AV, McNatt MW, Carr KM, Kaguni JM. Essential amino acids of Escherichia coli DnaC protein in an N-terminal domain interact with DnaB helicase. J Biol Chem 2001;276:27345-53. [PMID: 11333269 DOI: 10.1074/jbc.m101940200] [Citation(s) in RCA: 44] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
28
Rajendran S, Jezewska MJ, Bujalowski W. Recognition of template-primer and gapped DNA substrates by the human DNA polymerase beta. J Mol Biol 2001;308:477-500. [PMID: 11327782 DOI: 10.1006/jmbi.2001.4571] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
29
Bárcena M, Ruiz T, Donate LE, Brown SE, Dixon NE, Radermacher M, Carazo JM. The DnaB.DnaC complex: a structure based on dimers assembled around an occluded channel. EMBO J 2001;20:1462-8. [PMID: 11250911 PMCID: PMC145514 DOI: 10.1093/emboj/20.6.1462] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
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