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For: Juneja J, Bhavesh NS, Udgaonkar JB, Hosur RV. NMR identification and characterization of the flexible regions in the 160 kDa molten globule-like aggregate of barstar at low pH. Biochemistry 2002;41:9885-99. [PMID: 12146954 DOI: 10.1021/bi026034w] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Number Cited by Other Article(s)
1
Morris OM, Torpey JH, Isaacson RL. Intrinsically disordered proteins: modes of binding with emphasis on disordered domains. Open Biol 2021;11:210222. [PMID: 34610267 PMCID: PMC8492171 DOI: 10.1098/rsob.210222] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
2
Pillai M, Jha SK. The Folding and Aggregation Energy Landscapes of Tethered RRM Domains of Human TDP-43 Are Coupled via a Metastable Molten Globule-like Oligomer. Biochemistry 2018;58:608-620. [DOI: 10.1021/acs.biochem.8b01013] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
3
Sengupta I, Bhate SH, Das R, Udgaonkar JB. Salt-Mediated Oligomerization of the Mouse Prion Protein Monitored by Real-Time NMR. J Mol Biol 2017;429:1852-1872. [DOI: 10.1016/j.jmb.2017.05.006] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2016] [Revised: 05/05/2017] [Accepted: 05/07/2017] [Indexed: 12/11/2022]
4
Singh J, Udgaonkar JB. The Pathogenic Mutation T182A Converts the Prion Protein into a Molten Globule-like Conformation Whose Misfolding to Oligomers but Not to Fibrils Is Drastically Accelerated. Biochemistry 2016;55:459-69. [DOI: 10.1021/acs.biochem.5b01266] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
5
Mondal S, Kallianpur MV, Udgaonkar JB, Krishnamoorthy G. Molecular crowding causes narrowing of population heterogeneity and restricts internal dynamics in a protein. Methods Appl Fluoresc 2015. [DOI: 10.1088/2050-6120/4/1/014003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
6
Shivu B, Seshadri S, Li J, Oberg KA, Uversky VN, Fink AL. Distinct β-sheet structure in protein aggregates determined by ATR-FTIR spectroscopy. Biochemistry 2013;52:5176-83. [PMID: 23837615 DOI: 10.1021/bi400625v] [Citation(s) in RCA: 166] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
7
Jha A, Narayan S, Udgaonkar JB, Krishnamoorthy G. Solvent-induced tuning of internal structure in a protein amyloid protofibril. Biophys J 2013;103:797-806. [PMID: 22947941 DOI: 10.1016/j.bpj.2012.07.021] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2012] [Revised: 07/06/2012] [Accepted: 07/11/2012] [Indexed: 10/28/2022]  Open
8
Rajagopalan S, Kurt N, Cavagnero S. High-resolution conformation and backbone dynamics of a soluble aggregate of apomyoglobin119. Biophys J 2011;100:747-755. [PMID: 21281590 DOI: 10.1016/j.bpj.2010.12.3722] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2010] [Revised: 11/29/2010] [Accepted: 12/16/2010] [Indexed: 11/17/2022]  Open
9
Sekhar A, Udgaonkar JB. Fluoroalcohol-induced modulation of the pathway of amyloid protofibril formation by barstar. Biochemistry 2011;50:805-19. [PMID: 21182336 DOI: 10.1021/bi101312h] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
10
Jha A, Ishii K, Udgaonkar JB, Tahara T, Krishnamoorthy G. Exploration of the Correlation between Solvation Dynamics and Internal Dynamics of a Protein. Biochemistry 2010;50:397-408. [DOI: 10.1021/bi101440c] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
11
Sahoo B, Nag S, Sengupta P, Maiti S. On the stability of the soluble amyloid aggregates. Biophys J 2009;97:1454-60. [PMID: 19720034 DOI: 10.1016/j.bpj.2009.05.055] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2009] [Revised: 04/08/2009] [Accepted: 05/20/2009] [Indexed: 11/19/2022]  Open
12
Jha A, Udgaonkar JB, Krishnamoorthy G. Characterization of the Heterogeneity and Specificity of Interpolypeptide Interactions in Amyloid Protofibrils by Measurement of Site-Specific Fluorescence Anisotropy Decay Kinetics. J Mol Biol 2009;393:735-52. [DOI: 10.1016/j.jmb.2009.08.053] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2009] [Revised: 07/24/2009] [Accepted: 08/17/2009] [Indexed: 10/20/2022]
13
Kumar S, Udgaonkar JB. Structurally distinct amyloid protofibrils form on separate pathways of aggregation of a small protein. Biochemistry 2009;48:6441-9. [PMID: 19505087 DOI: 10.1021/bi900682w] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
14
Fluctuating partially native-like topologies in the acid denatured ensemble of autolysis resistant HIV-1 protease. Arch Biochem Biophys 2009;482:33-41. [DOI: 10.1016/j.abb.2008.11.022] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2008] [Revised: 11/20/2008] [Accepted: 11/24/2008] [Indexed: 11/18/2022]
15
Kumar S, Udgaonkar JB. Conformational conversion may precede or follow aggregate elongation on alternative pathways of amyloid protofibril formation. J Mol Biol 2008;385:1266-76. [PMID: 19063899 DOI: 10.1016/j.jmb.2008.11.033] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2008] [Revised: 11/14/2008] [Accepted: 11/15/2008] [Indexed: 11/30/2022]
16
Seravalli J, Ragsdale SW. 13C NMR characterization of an exchange reaction between CO and CO2 catalyzed by carbon monoxide dehydrogenase. Biochemistry 2008;47:6770-81. [PMID: 18589895 PMCID: PMC2664834 DOI: 10.1021/bi8004522] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2008] [Revised: 04/21/2008] [Indexed: 11/30/2022]
17
Kumar S, Mohanty SK, Udgaonkar JB. Mechanism of Formation of Amyloid Protofibrils of Barstar from Soluble Oligomers: Evidence for Multiple Steps and Lateral Association Coupled to Conformational Conversion. J Mol Biol 2007;367:1186-204. [PMID: 17292913 DOI: 10.1016/j.jmb.2007.01.039] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2006] [Revised: 01/12/2007] [Accepted: 01/16/2007] [Indexed: 11/29/2022]
18
Chatterjee A, Kumar A, Hosur RV. Alanine check points in HNN and HN(C)N spectra. JOURNAL OF MAGNETIC RESONANCE (SAN DIEGO, CALIF. : 1997) 2006;181:21-8. [PMID: 16574444 DOI: 10.1016/j.jmr.2006.03.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2006] [Revised: 03/08/2006] [Accepted: 03/09/2006] [Indexed: 05/08/2023]
19
Wang X, Wang M, Tong Y, Shan L, Wang J. Probing the folding capacity and residual structures in 1-79 residues fragment of staphylococcal nuclease by biophysical and NMR methods. Biochimie 2006;88:1343-55. [PMID: 17045725 DOI: 10.1016/j.biochi.2006.05.002] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2006] [Accepted: 05/03/2006] [Indexed: 12/01/2022]
20
Mukhopadhyay S, Nayak PK, Udgaonkar JB, Krishnamoorthy G. Characterization of the Formation of Amyloid Protofibrils from Barstar by Mapping Residue-specific Fluorescence Dynamics. J Mol Biol 2006;358:935-42. [PMID: 16546212 DOI: 10.1016/j.jmb.2006.02.006] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2005] [Revised: 12/18/2005] [Accepted: 02/02/2006] [Indexed: 10/25/2022]
21
Sun ZYJ, Frueh DP, Selenko P, Hoch JC, Wagner G. Fast assignment of 15N-HSQC peaks using high-resolution 3D HNcocaNH experiments with non-uniform sampling. JOURNAL OF BIOMOLECULAR NMR 2005;33:43-50. [PMID: 16222556 DOI: 10.1007/s10858-005-1284-4] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2005] [Accepted: 07/18/2005] [Indexed: 05/04/2023]
22
Dong A, Lam T. Equilibrium titrations of acid-induced unfolding–refolding and salt-induced molten globule of cytochrome c by FT-IR spectroscopy. Arch Biochem Biophys 2005;436:154-60. [PMID: 15752720 DOI: 10.1016/j.abb.2005.01.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2004] [Revised: 01/12/2005] [Indexed: 10/25/2022]
23
NMR of unfolded proteins. J CHEM SCI 2005. [DOI: 10.1007/bf02704356] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
24
Bhavesh NS, Juneja J, Udgaonkar JB, Hosur RV. Native and nonnative conformational preferences in the urea-unfolded state of barstar. Protein Sci 2004;13:3085-91. [PMID: 15537753 PMCID: PMC2287308 DOI: 10.1110/ps.04805204] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2004] [Revised: 07/12/2004] [Accepted: 08/14/2004] [Indexed: 10/26/2022]
25
Bhavesh NS, Chatterjee A, Panchal SC, Hosur RV. Application of HN(C)N to rapid estimation of 1J(N-C(alpha)) coupling constants correlated to psi torsion angles in proteins: implication to structural genomics. Biochem Biophys Res Commun 2003;311:678-84. [PMID: 14623325 DOI: 10.1016/j.bbrc.2003.09.237] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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