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For: Bergo V, Amsden JJ, Spudich EN, Spudich JL, Rothschild KJ. Structural Changes in the Photoactive Site of Proteorhodopsin during the Primary Photoreaction. Biochemistry 2004;43:9075-83. [PMID: 15248764 DOI: 10.1021/bi0361968] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Number Cited by Other Article(s)
1
Saliminasab M, Yamazaki Y, Palmateer A, Harris A, Schubert L, Langner P, Heberle J, Bondar AN, Brown LS. A Proteorhodopsin-Related Photosensor Expands the Repertoire of Structural Motifs Employed by Sensory Rhodopsins. J Phys Chem B 2023;127:7872-7886. [PMID: 37694950 PMCID: PMC10519204 DOI: 10.1021/acs.jpcb.3c04032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Revised: 08/09/2023] [Indexed: 09/12/2023]
2
My remembrances of H.G. Khorana: exploring the mechanism of bacteriorhodopsin with site-directed mutagenesis and FTIR difference spectroscopy. Biophys Rev 2023;15:103-110. [PMID: 36909952 PMCID: PMC9995631 DOI: 10.1007/s12551-023-01046-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Accepted: 01/23/2023] [Indexed: 02/09/2023]  Open
3
Mei G, Cavini CM, Mamaeva N, Wang P, DeGrip WJ, Rothschild KJ. Optical Switching Between Long-lived States of Opsin Transmembrane Voltage Sensors. Photochem Photobiol 2021;97:1001-1015. [PMID: 33817800 PMCID: PMC8596844 DOI: 10.1111/php.13428] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2021] [Revised: 03/31/2021] [Accepted: 04/01/2021] [Indexed: 11/27/2022]
4
Li H, Huang CY, Govorunova EG, Sineshchekov OA, Yi A, Rothschild KJ, Wang M, Zheng L, Spudich JL. The crystal structure of bromide-bound GtACR1 reveals a pre-activated state in the transmembrane anion tunnel. eLife 2021;10:65903. [PMID: 33998458 PMCID: PMC8172240 DOI: 10.7554/elife.65903] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Accepted: 05/16/2021] [Indexed: 12/16/2022]  Open
5
Tomida S, Ito S, Mato T, Furutani Y, Inoue K, Kandori H. Infrared spectroscopic analysis on structural changes around the protonated Schiff base upon retinal isomerization in light-driven sodium pump KR2. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2020;1861:148190. [DOI: 10.1016/j.bbabio.2020.148190] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2019] [Revised: 01/30/2020] [Accepted: 03/13/2020] [Indexed: 10/24/2022]
6
Mei G, Mamaeva N, Ganapathy S, Wang P, DeGrip WJ, Rothschild KJ. Analog Retinal Redshifts Visible Absorption of QuasAr Transmembrane Voltage Sensors into Near-infrared. Photochem Photobiol 2019;96:55-66. [PMID: 31556123 PMCID: PMC7004139 DOI: 10.1111/php.13169] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Revised: 09/05/2019] [Accepted: 09/07/2019] [Indexed: 12/01/2022]
7
Hontani Y, Ganapathy S, Frehan S, Kloz M, de Grip WJ, Kennis JTM. Photoreaction Dynamics of Red-Shifting Retinal Analogues Reconstituted in Proteorhodopsin. J Phys Chem B 2019;123:4242-4250. [PMID: 30998011 PMCID: PMC6526469 DOI: 10.1021/acs.jpcb.9b01136] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
8
Mei G, Mamaeva N, Ganapathy S, Wang P, DeGrip WJ, Rothschild KJ. Raman spectroscopy of a near infrared absorbing proteorhodopsin: Similarities to the bacteriorhodopsin O photointermediate. PLoS One 2018;13:e0209506. [PMID: 30586409 PMCID: PMC6306260 DOI: 10.1371/journal.pone.0209506] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2018] [Accepted: 12/06/2018] [Indexed: 02/07/2023]  Open
9
Buda F, Keijer T, Ganapathy S, de Grip WJ. A Quantum-mechanical Study of the Binding Pocket of Proteorhodopsin: Absorption and Vibrational Spectra Modulated by Analogue Chromophores. Photochem Photobiol 2017;93:1399-1406. [DOI: 10.1111/php.12800] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Accepted: 05/22/2017] [Indexed: 12/19/2022]
10
Yi A, Li H, Mamaeva N, Fernandez De Cordoba RE, Lugtenburg J, DeGrip WJ, Spudich JL, Rothschild KJ. Structural Changes in an Anion Channelrhodopsin: Formation of the K and L Intermediates at 80 K. Biochemistry 2017;56:2197-2208. [PMID: 28350445 DOI: 10.1021/acs.biochem.7b00002] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
11
Eckert CE, Kaur J, Glaubitz C, Wachtveitl J. Ultrafast Photoinduced Deactivation Dynamics of Proteorhodopsin. J Phys Chem Lett 2017;8:512-517. [PMID: 28072545 DOI: 10.1021/acs.jpclett.6b02975] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
12
Yi A, Mamaeva N, Li H, Spudich JL, Rothschild KJ. Resonance Raman Study of an Anion Channelrhodopsin: Effects of Mutations near the Retinylidene Schiff Base. Biochemistry 2016;55:2371-80. [PMID: 27039989 DOI: 10.1021/acs.biochem.6b00104] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
13
Ogren JI, Yi A, Mamaev S, Li H, Spudich JL, Rothschild KJ. Proton transfers in a channelrhodopsin-1 studied by Fourier transform infrared (FTIR) difference spectroscopy and site-directed mutagenesis. J Biol Chem 2015;290:12719-30. [PMID: 25802337 DOI: 10.1074/jbc.m114.634840] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2014] [Indexed: 11/06/2022]  Open
14
Ogren JI, Yi A, Mamaev S, Li H, Lugtenburg J, DeGrip WJ, Spudich JL, Rothschild KJ. Comparison of the structural changes occurring during the primary phototransition of two different channelrhodopsins from Chlamydomonas algae. Biochemistry 2014;54:377-88. [PMID: 25469620 PMCID: PMC4303311 DOI: 10.1021/bi501243y] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
15
Mao J, Do NN, Scholz F, Reggie L, Mehler M, Lakatos A, Ong YS, Ullrich SJ, Brown LJ, Brown RCD, Becker-Baldus J, Wachtveitl J, Glaubitz C. Structural basis of the green-blue color switching in proteorhodopsin as determined by NMR spectroscopy. J Am Chem Soc 2014;136:17578-90. [PMID: 25415762 DOI: 10.1021/ja5097946] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
16
Wang S, Ladizhansky V. Recent advances in magic angle spinning solid state NMR of membrane proteins. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2014;82:1-26. [PMID: 25444696 DOI: 10.1016/j.pnmrs.2014.07.001] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2014] [Revised: 07/16/2014] [Accepted: 07/20/2014] [Indexed: 05/14/2023]
17
Brown LS. Eubacterial rhodopsins - unique photosensors and diverse ion pumps. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2013;1837:553-61. [PMID: 23748216 DOI: 10.1016/j.bbabio.2013.05.006] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2013] [Revised: 05/27/2013] [Accepted: 05/29/2013] [Indexed: 10/26/2022]
18
Saint Clair EC, Ogren JI, Mamaev S, Russano D, Kralj JM, Rothschild KJ. Near-IR resonance Raman spectroscopy of archaerhodopsin 3: effects of transmembrane potential. J Phys Chem B 2012. [PMID: 23189985 DOI: 10.1021/jp309996a] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
19
Herz J, Verhoefen MK, Weber I, Bamann C, Glaubitz C, Wachtveitl J. Critical role of Asp227 in the photocycle of proteorhodopsin. Biochemistry 2012;51:5589-600. [PMID: 22738119 DOI: 10.1021/bi3003764] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
20
Clair ECS, Ogren JI, Mamaev S, Kralj JM, Rothschild KJ. Conformational changes in the archaerhodopsin-3 proton pump: detection of conserved strongly hydrogen bonded water networks. J Biol Phys 2011;38:153-68. [PMID: 23277676 DOI: 10.1007/s10867-011-9246-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2011] [Accepted: 10/25/2011] [Indexed: 11/30/2022]  Open
21
Low temperature FTIR spectroscopy provides new insights in the pH-dependent proton pathway of proteorhodopsin. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2011;1807:1583-90. [DOI: 10.1016/j.bbabio.2011.09.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/08/2011] [Revised: 08/25/2011] [Accepted: 09/05/2011] [Indexed: 11/15/2022]
22
Ranaghan MJ, Schwall CT, Alder NN, Birge RR. Green proteorhodopsin reconstituted into nanoscale phospholipid bilayers (nanodiscs) as photoactive monomers. J Am Chem Soc 2011;133:18318-27. [PMID: 21951206 PMCID: PMC3218432 DOI: 10.1021/ja2070957] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
23
Ward ME, Shi L, Lake E, Krishnamurthy S, Hutchins H, Brown LS, Ladizhansky V. Proton-detected solid-state NMR reveals intramembrane polar networks in a seven-helical transmembrane protein proteorhodopsin. J Am Chem Soc 2011;133:17434-43. [PMID: 21919530 DOI: 10.1021/ja207137h] [Citation(s) in RCA: 97] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
24
Hempelmann F, Hölper S, Verhoefen MK, Woerner AC, Köhler T, Fiedler SA, Pfleger N, Wachtveitl J, Glaubitz C. His75−Asp97 Cluster in Green Proteorhodopsin. J Am Chem Soc 2011;133:4645-54. [DOI: 10.1021/ja111116a] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
25
Ranaghan MJ, Shima S, Ramos L, Poulin DS, Whited G, Rajasekaran S, Stuart JA, Albert AD, Birge RR. Photochemical and thermal stability of green and blue proteorhodopsins: implications for protein-based bioelectronic devices. J Phys Chem B 2011;114:14064-70. [PMID: 20964279 DOI: 10.1021/jp106633w] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
26
Sharaabi Y, Brumfeld V, Sheves M. Binding of Anions to Proteorhodopsin Affects the Asp97 pKa. Biochemistry 2010;49:4457-65. [DOI: 10.1021/bi901746b] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
27
Dioumaev AK, Wang JM, Lanyi JK. Low-temperature FTIR study of multiple K intermediates in the photocycles of bacteriorhodopsin and xanthorhodopsin. J Phys Chem B 2010;114:2920-31. [PMID: 20136108 PMCID: PMC3820168 DOI: 10.1021/jp908698f] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
28
Shi L, Lake EM, Ahmed MA, Brown LS, Ladizhansky V. Solid-state NMR study of proteorhodopsin in the lipid environment: Secondary structure and dynamics. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2009;1788:2563-74. [DOI: 10.1016/j.bbamem.2009.09.011] [Citation(s) in RCA: 88] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2009] [Revised: 09/16/2009] [Accepted: 09/21/2009] [Indexed: 11/26/2022]
29
Lörinczi É, Verhoefen MK, Wachtveitl J, Woerner AC, Glaubitz C, Engelhard M, Bamberg E, Friedrich T. Voltage- and pH-Dependent Changes in Vectoriality of Photocurrents Mediated by Wild-type and Mutant Proteorhodopsins upon Expression in Xenopus Oocytes. J Mol Biol 2009;393:320-41. [DOI: 10.1016/j.jmb.2009.07.055] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2009] [Revised: 06/15/2009] [Accepted: 07/17/2009] [Indexed: 10/20/2022]
30
Solid-state NMR and functional studies on proteorhodopsin. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2009;1787:697-705. [DOI: 10.1016/j.bbabio.2009.02.022] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2009] [Revised: 02/16/2009] [Accepted: 02/17/2009] [Indexed: 11/19/2022]
31
Miranda MRM, Choi AR, Shi L, Bezerra AG, Jung KH, Brown LS. The photocycle and proton translocation pathway in a cyanobacterial ion-pumping rhodopsin. Biophys J 2009;96:1471-81. [PMID: 19217863 DOI: 10.1016/j.bpj.2008.11.026] [Citation(s) in RCA: 81] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2008] [Accepted: 11/14/2008] [Indexed: 10/21/2022]  Open
32
Verhoefen MK, Neumann K, Weber I, Glaubitz C, Wachtveitl J. Primary Reaction Dynamics of Proteorhodopsin Mutant D97N Observed by Femtosecond Infrared and Visible Spectroscopy. Photochem Photobiol 2009;85:540-6. [DOI: 10.1111/j.1751-1097.2008.00513.x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
33
Schäfer G, Shastri S, Verhoefen MK, Vogel V, Glaubitz C, Wachtveitl J, Mäntele W. Characterizing the Structure and Photocycle of PR 2D Crystals with CD and FTIR Spectroscopy. Photochem Photobiol 2009;85:529-34. [DOI: 10.1111/j.1751-1097.2008.00491.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
34
Bergo VB, Sineshchekov OA, Kralj JM, Partha R, Spudich EN, Rothschild KJ, Spudich JL. His-75 in proteorhodopsin, a novel component in light-driven proton translocation by primary pumps. J Biol Chem 2008;284:2836-2843. [PMID: 19015272 DOI: 10.1074/jbc.m803792200] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
35
Amsden JJ, Kralj JM, Bergo VB, Spudich EN, Spudich JL, Rothschild KJ. Different structural changes occur in blue- and green-proteorhodopsins during the primary photoreaction. Biochemistry 2008;47:11490-8. [PMID: 18842006 DOI: 10.1021/bi800945t] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
36
Kralj JM, Spudich EN, Spudich JL, Rothschild KJ. Raman spectroscopy reveals direct chromophore interactions in the Leu/Gln105 spectral tuning switch of proteorhodopsins. J Phys Chem B 2008;112:11770-6. [PMID: 18717545 PMCID: PMC3608850 DOI: 10.1021/jp802629e] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
37
Kim SY, Waschuk SA, Brown LS, Jung KH. Screening and characterization of proteorhodopsin color-tuning mutations in Escherichia coli with endogenous retinal synthesis. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2008;1777:504-13. [PMID: 18433714 DOI: 10.1016/j.bbabio.2008.03.010] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2008] [Revised: 03/08/2008] [Accepted: 03/13/2008] [Indexed: 11/18/2022]
38
Initial reaction dynamics of proteorhodopsin observed by femtosecond infrared and visible spectroscopy. Biophys J 2008;94:4796-807. [PMID: 18326639 DOI: 10.1529/biophysj.107.125484] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
39
Kralj JM, Bergo VB, Amsden JJ, Spudich EN, Spudich JL, Rothschild KJ. Protonation state of Glu142 differs in the green- and blue-absorbing variants of proteorhodopsin. Biochemistry 2008;47:3447-53. [PMID: 18284210 DOI: 10.1021/bi7018964] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
40
Characterization of the primary photochemistry of proteorhodopsin with femtosecond spectroscopy. Biophys J 2008;94:4020-30. [PMID: 18234812 DOI: 10.1529/biophysj.107.121376] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
41
Pfleger N, Lorch M, Woerner AC, Shastri S, Glaubitz C. Characterisation of Schiff base and chromophore in green proteorhodopsin by solid-state NMR. JOURNAL OF BIOMOLECULAR NMR 2008;40:15-21. [PMID: 17968661 DOI: 10.1007/s10858-007-9203-5] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2007] [Revised: 09/27/2007] [Accepted: 10/01/2007] [Indexed: 05/25/2023]
42
Amsden JJ, Kralj JM, Chieffo LR, Wang X, Erramilli S, Spudich EN, Spudich JL, Ziegler LD, Rothschild KJ. Subpicosecond protein backbone changes detected during the green-absorbing proteorhodopsin primary photoreaction. J Phys Chem B 2007;111:11824-31. [PMID: 17880126 DOI: 10.1021/jp073490r] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
43
Sudo Y, Furutani Y, Spudich JL, Kandori H. Early photocycle structural changes in a bacteriorhodopsin mutant engineered to transmit photosensory signals. J Biol Chem 2007;282:15550-8. [PMID: 17387174 DOI: 10.1074/jbc.m701271200] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
44
Bergo VB, Ntefidou M, Trivedi VD, Amsden JJ, Kralj JM, Rothschild KJ, Spudich JL. Conformational Changes in the Photocycle of Anabaena Sensory Rhodopsin. J Biol Chem 2006;281:15208-14. [PMID: 16537532 DOI: 10.1074/jbc.m600033200] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
45
Strongly hydrogen-bonded water molecule is observed only in the alkaline form of proteorhodopsin. Chem Phys 2006. [DOI: 10.1016/j.chemphys.2005.12.013] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Lenz MO, Huber R, Schmidt B, Gilch P, Kalmbach R, Engelhard M, Wachtveitl J. First steps of retinal photoisomerization in proteorhodopsin. Biophys J 2006;91:255-62. [PMID: 16603495 PMCID: PMC1479053 DOI: 10.1529/biophysj.105.074690] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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Ward N. New directions and interactions in metagenomics research. FEMS Microbiol Ecol 2006;55:331-8. [PMID: 16466373 DOI: 10.1111/j.1574-6941.2005.00055.x] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]  Open
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Brown LS, Jung KH. Bacteriorhodopsin-like proteins of eubacteria and fungi: the extent of conservation of the haloarchaeal proton-pumping mechanism. Photochem Photobiol Sci 2006;5:538-46. [PMID: 16761082 DOI: 10.1039/b514537f] [Citation(s) in RCA: 85] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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DeLong EF. Microbial community genomics in the ocean. Nat Rev Microbiol 2005;3:459-69. [PMID: 15886695 DOI: 10.1038/nrmicro1158] [Citation(s) in RCA: 179] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Bergo VB, Spudich EN, Rothschild KJ, Spudich JL. Photoactivation perturbs the membrane-embedded contacts between sensory rhodopsin II and its transducer. J Biol Chem 2005;280:28365-9. [PMID: 15951432 DOI: 10.1074/jbc.m505555200] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
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