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For: Rasia RM, Mateos J, Bologna NG, Burdisso P, Imbert L, Palatnik JF, Boisbouvier J. Structure and RNA interactions of the plant MicroRNA processing-associated protein HYL1. Biochemistry 2010;49:8237-9. [PMID: 20735118 DOI: 10.1021/bi100672x] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Number Cited by Other Article(s)
1
Gonzalo L, Giudicatti AJ, Manavella PA. HYL1's multiverse: A journey through miRNA biogenesis and beyond canonical and non-canonical functions of HYL1. CURRENT OPINION IN PLANT BIOLOGY 2024;80:102546. [PMID: 38718678 DOI: 10.1016/j.pbi.2024.102546] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 04/15/2024] [Accepted: 04/16/2024] [Indexed: 06/14/2024]
2
Paul J, Deshmukh MV. Chemical shift assignment of dsRBD1 and dsRBD2 of Arabidopsis thaliana DRB3, an essential protein involved in RNAi-mediated antiviral defense. BIOMOLECULAR NMR ASSIGNMENTS 2024;18:99-104. [PMID: 38668800 DOI: 10.1007/s12104-024-10174-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Accepted: 04/14/2024] [Indexed: 05/12/2024]
3
Wieczorek P, Jarmołowski A, Szweykowska-Kulińska Z, Kozak M, Taube M. Solution structure and behaviour of the Arabidopsis thaliana HYL1 protein. Biochim Biophys Acta Gen Subj 2023;1867:130376. [PMID: 37150226 DOI: 10.1016/j.bbagen.2023.130376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2023] [Revised: 04/14/2023] [Accepted: 05/02/2023] [Indexed: 05/09/2023]
4
Kumari P, Khan S, Wani IA, Gupta R, Verma S, Alam P, Alaklabi A. Unravelling the Role of Epigenetic Modifications in Development and Reproduction of Angiosperms: A Critical Appraisal. Front Genet 2022;13:819941. [PMID: 35664328 PMCID: PMC9157814 DOI: 10.3389/fgene.2022.819941] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Accepted: 02/14/2022] [Indexed: 12/28/2022]  Open
5
Sacnun JM, Crespo R, Palatnik J, Rasia R, González-Schain N. Dual function of HYPONASTIC LEAVES 1 during early skotomorphogenic growth in Arabidopsis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020;102:977-991. [PMID: 31922639 DOI: 10.1111/tpj.14681] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2019] [Accepted: 01/03/2020] [Indexed: 05/22/2023]
6
Narjala A, Nair A, Tirumalai V, Hari Sundar GV, Shivaprasad PV. A conserved sequence signature is essential for robust plant miRNA biogenesis. Nucleic Acids Res 2020;48:3103-3118. [PMID: 32025695 PMCID: PMC7102948 DOI: 10.1093/nar/gkaa077] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Revised: 01/23/2020] [Accepted: 01/29/2020] [Indexed: 12/19/2022]  Open
7
Moro B, Chorostecki U, Arikit S, Suarez IP, Höbartner C, Rasia RM, Meyers BC, Palatnik JF. Efficiency and precision of microRNA biogenesis modes in plants. Nucleic Acids Res 2019;46:10709-10723. [PMID: 30289546 PMCID: PMC6237749 DOI: 10.1093/nar/gky853] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Accepted: 10/01/2018] [Indexed: 12/21/2022]  Open
8
Dolata J, Taube M, Bajczyk M, Jarmolowski A, Szweykowska-Kulinska Z, Bielewicz D. Regulation of Plant Microprocessor Function in Shaping microRNA Landscape. FRONTIERS IN PLANT SCIENCE 2018;9:753. [PMID: 29922322 PMCID: PMC5996484 DOI: 10.3389/fpls.2018.00753] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Accepted: 05/16/2018] [Indexed: 05/19/2023]
9
Tripathi A, Goswami K, Sanan-Mishra N. Role of bioinformatics in establishing microRNAs as modulators of abiotic stress responses: the new revolution. Front Physiol 2015;6:286. [PMID: 26578966 PMCID: PMC4620411 DOI: 10.3389/fphys.2015.00286] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2015] [Accepted: 09/28/2015] [Indexed: 12/15/2022]  Open
10
Chiliveri SC, Deshmukh MV. Chemical shift assignments of DRB4 (1-153), a dsRNA binding protein in A. thaliana RNAi pathway. BIOMOLECULAR NMR ASSIGNMENTS 2015;9:253-256. [PMID: 25281003 DOI: 10.1007/s12104-014-9585-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2014] [Accepted: 09/29/2014] [Indexed: 06/03/2023]
11
Burdisso P, Milia F, Schapire AL, Bologna NG, Palatnik JF, Rasia RM. Structural determinants of Arabidopsis thaliana Hyponastic leaves 1 function in vivo. PLoS One 2014;9:e113243. [PMID: 25409478 PMCID: PMC4237382 DOI: 10.1371/journal.pone.0113243] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2014] [Accepted: 10/21/2014] [Indexed: 12/12/2022]  Open
12
Yang X, Ren W, Zhao Q, Zhang P, Wu F, He Y. Homodimerization of HYL1 ensures the correct selection of cleavage sites in primary miRNA. Nucleic Acids Res 2014;42:12224-36. [PMID: 25294831 PMCID: PMC4231765 DOI: 10.1093/nar/gku907] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
13
Structure of RDE-4 dsRBDs and mutational studies provide insights into dsRNA recognition in the Caenorhabditis elegans RNAi pathway. Biochem J 2014;458:119-30. [PMID: 24256178 DOI: 10.1042/bj20131347] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
14
Roth BM, Ishimaru D, Hennig M. The core microprocessor component DiGeorge syndrome critical region 8 (DGCR8) is a nonspecific RNA-binding protein. J Biol Chem 2013;288:26785-99. [PMID: 23893406 DOI: 10.1074/jbc.m112.446880] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
15
Rogers K, Chen X. microRNA biogenesis and turnover in plants. COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY 2013;77:183-94. [PMID: 23439913 DOI: 10.1101/sqb.2013.77.014530] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
16
Benoit MPMH, Imbert L, Palencia A, Pérard J, Ebel C, Boisbouvier J, Plevin MJ. The RNA-binding region of human TRBP interacts with microRNA precursors through two independent domains. Nucleic Acids Res 2013;41:4241-52. [PMID: 23435228 PMCID: PMC3627579 DOI: 10.1093/nar/gkt086] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
17
Burdisso P, Suarez IP, Bologna NG, Palatnik JF, Bersch B, Rasia RM. Second double-stranded RNA binding domain of dicer-like ribonuclease 1: structural and biochemical characterization. Biochemistry 2012. [PMID: 23194006 DOI: 10.1021/bi301247r] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
18
Masliah G, Barraud P, Allain FHT. RNA recognition by double-stranded RNA binding domains: a matter of shape and sequence. Cell Mol Life Sci 2012;70:1875-95. [PMID: 22918483 DOI: 10.1007/s00018-012-1119-x] [Citation(s) in RCA: 118] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2012] [Revised: 08/01/2012] [Accepted: 08/06/2012] [Indexed: 10/28/2022]
19
Brutscher B, Lescop E. Fast protein backbone NMR resonance assignment using the BATCH strategy. Methods Mol Biol 2012;831:407-28. [PMID: 22167685 DOI: 10.1007/978-1-61779-480-3_21] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/12/2023]
20
Nagata T, Tsuda K, Kobayashi N, Shirouzu M, Kigawa T, Güntert P, Yokoyama S, Muto Y. Solution structures of the double-stranded RNA-binding domains from RNA helicase A. Proteins 2012;80:1699-706. [PMID: 22454253 DOI: 10.1002/prot.24059] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2011] [Revised: 02/03/2012] [Accepted: 02/07/2012] [Indexed: 12/21/2022]
21
Yaish MW, Colasanti J, Rothstein SJ. The role of epigenetic processes in controlling flowering time in plants exposed to stress. JOURNAL OF EXPERIMENTAL BOTANY 2011;62:3727-35. [PMID: 21633082 DOI: 10.1093/jxb/err177] [Citation(s) in RCA: 108] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
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