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For: Yamaguchi KI, Matsumoto T, Kuwata K. Critical region for amyloid fibril formation of mouse prion protein: unusual amyloidogenic properties of the helix 2 peptide. Biochemistry 2009;47:13242-51. [PMID: 19053276 DOI: 10.1021/bi801562w] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Ansari NK, Rais A, Naeem A. Methotrexate for Drug Repurposing as an Anti-Aggregatory Agent to Mercuric Treated α-Chymotrypsinogen-A. Protein J 2024;43:362-374. [PMID: 38431536 DOI: 10.1007/s10930-024-10187-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/24/2024] [Indexed: 03/05/2024]
2
Cortez LM, Morrison AJ, Garen CR, Patterson S, Uyesugi T, Petrosyan R, Sekar RV, Harms MJ, Woodside MT, Sim VL. Probing the origin of prion protein misfolding via reconstruction of ancestral proteins. Protein Sci 2022;31:e4477. [PMID: 36254680 PMCID: PMC9667828 DOI: 10.1002/pro.4477] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Revised: 10/11/2022] [Accepted: 10/13/2022] [Indexed: 12/13/2022]
3
Housmans JAJ, Houben B, Monge-Morera M, Asvestas D, Nguyen HH, Tsaka G, Louros N, Carpentier S, Delcour JA, Rousseau F, Schymkowitz J. Investigating the Sequence Determinants of the Curling of Amyloid Fibrils Using Ovalbumin as a Case Study. Biomacromolecules 2022;23:3779-3797. [PMID: 36027608 DOI: 10.1021/acs.biomac.2c00660] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
4
Rajan D, Rajamanikandan R, Ilanchelian M. Morphological and biophysical insights into the gold nanorods binding interaction of haemoglobin/myoglobin by hybrid spectroscopic approaches with bacterial cytotoxicity evaluation. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.118777] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
5
Bergasa-Caceres F, Rabitz HA. Identification of Two Early Folding Stage Prion Non-Local Contacts Suggested to Serve as Key Steps in Directing the Final Fold to Be Either Native or Pathogenic. Int J Mol Sci 2021;22:ijms22168619. [PMID: 34445324 PMCID: PMC8395309 DOI: 10.3390/ijms22168619] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Revised: 07/30/2021] [Accepted: 08/04/2021] [Indexed: 12/16/2022]  Open
6
Mechanism of misfolding of the human prion protein revealed by a pathological mutation. Proc Natl Acad Sci U S A 2021;118:2019631118. [PMID: 33731477 PMCID: PMC7999870 DOI: 10.1073/pnas.2019631118] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]  Open
7
9-N-substituted novel berberine derivative for selective and sensitive nanomolar level fluorometric detection of human hemoglobin: A synthesis, sensing and interaction study. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2020.114741] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
8
Hasan S, Isar M, Naeem A. Macromolecular crowding stabilises native structure of α-chymotrypsinogen-A against hexafluoropropanol-induced aggregates. Int J Biol Macromol 2020;164:3780-3788. [PMID: 32835802 DOI: 10.1016/j.ijbiomac.2020.08.149] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2020] [Revised: 08/06/2020] [Accepted: 08/19/2020] [Indexed: 12/20/2022]
9
Thivya P, Wilson J. Electron rays irradiated polyaniline anchored over bovine serum albumin for simultaneous detection of epinephrine and uric acid. Microchem J 2019. [DOI: 10.1016/j.microc.2018.12.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
10
Shen HCH, Chen YH, Lin YS, Chu BKY, Liang CS, Yang CC, Chen RPY. Segments in the Amyloid Core that Distinguish Hamster from Mouse Prion Fibrils. Neurochem Res 2019;44:1399-1409. [PMID: 30603982 DOI: 10.1007/s11064-018-02709-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 11/29/2018] [Accepted: 12/23/2018] [Indexed: 10/27/2022]
11
Green synthesis of silver nanoparticles, its characterization, and chaperone-like activity in the aggregation inhibition of α-chymotrypsinogen A. Int J Biol Macromol 2018;120:2381-2389. [DOI: 10.1016/j.ijbiomac.2018.09.006] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2018] [Revised: 08/25/2018] [Accepted: 09/03/2018] [Indexed: 02/01/2023]
12
Honda R, Yamaguchi KI, Elhelaly AE, Fuji M, Kuwata K. Poly-L-histidine inhibits prion propagation in a prion-infected cell line. Prion 2018;12:226-233. [PMID: 30074430 DOI: 10.1080/19336896.2018.1505395] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]  Open
13
Yamaguchi KI, Kuwata K. Formation and properties of amyloid fibrils of prion protein. Biophys Rev 2018;10:517-525. [PMID: 29204880 PMCID: PMC5899736 DOI: 10.1007/s12551-017-0377-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2017] [Accepted: 11/23/2017] [Indexed: 02/06/2023]  Open
14
Honda R, Kuwata K. Evidence for a central role of PrP helix 2 in the nucleation of amyloid fibrils. FASEB J 2018;32:3641-3652. [PMID: 29401635 DOI: 10.1096/fj.201701183rr] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
15
Heier JL, Mikolajczak DJ, Böttcher C, Koksch B. Substrate specificity of an actively assembling amyloid catalyst. Biopolymers 2017;108. [PMID: 27858968 DOI: 10.1002/bip.23003] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Revised: 10/01/2016] [Accepted: 10/12/2016] [Indexed: 01/20/2023]
16
The role of the unusual threonine string in the conversion of prion protein. Sci Rep 2016;6:38877. [PMID: 27982059 PMCID: PMC5159806 DOI: 10.1038/srep38877] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2016] [Accepted: 11/15/2016] [Indexed: 01/24/2023]  Open
17
Wu EL, Qi Y, Park S, Mallajosyula SS, MacKerell AD, Klauda JB, Im W. Insight into Early-Stage Unfolding of GPI-Anchored Human Prion Protein. Biophys J 2016;109:2090-100. [PMID: 26588568 DOI: 10.1016/j.bpj.2015.10.009] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2015] [Revised: 10/04/2015] [Accepted: 10/08/2015] [Indexed: 11/29/2022]  Open
18
Yamamoto N. Hot Spot of Structural Ambivalence in Prion Protein Revealed by Secondary Structure Principal Component Analysis. J Phys Chem B 2014;118:9826-33. [DOI: 10.1021/jp5034245] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
19
Rufo CM, Moroz YS, Moroz OV, Stöhr J, Smith TA, Hu X, DeGrado WF, Korendovych IV. Short peptides self-assemble to produce catalytic amyloids. Nat Chem 2014;6:303-9. [PMID: 24651196 PMCID: PMC3996680 DOI: 10.1038/nchem.1894] [Citation(s) in RCA: 461] [Impact Index Per Article: 46.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2013] [Accepted: 02/12/2014] [Indexed: 12/22/2022]
20
A common mechanism underlying amyloid fibrillation and protein crystallization revealed by the effects of ultrasonication. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2013;1834:2640-6. [DOI: 10.1016/j.bbapap.2013.09.016] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2013] [Revised: 09/20/2013] [Accepted: 09/23/2013] [Indexed: 11/17/2022]
21
Yamaguchi KI, Kamatari YO, Fukuoka M, Miyaji R, Kuwata K. Nearly Reversible Conformational Change of Amyloid Fibrils as Revealed by pH-Jump Experiments. Biochemistry 2013;52:6797-806. [DOI: 10.1021/bi400698u] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
22
Chatterjee B, Lee CY, Lin C, Chen EHL, Huang CL, Yang CC, Chen RPY. Amyloid core formed of full-length recombinant mouse prion protein involves sequence 127-143 but not sequence 107-126. PLoS One 2013;8:e67967. [PMID: 23844138 PMCID: PMC3700907 DOI: 10.1371/journal.pone.0067967] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2013] [Accepted: 05/23/2013] [Indexed: 12/23/2022]  Open
23
Zhou X, Gao Q, Feng W, Pan K. Immobilization ofYarrowia lipolyticaLipase on Bamboo Charcoal to Resolve (R,S)-Phenylethanol in Organic Medium. Chem Eng Technol 2013. [DOI: 10.1002/ceat.201200672] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
24
Chuang CC, Liao TY, Chen EHL, Chen RPY. How do amino acid substitutions affect the amyloidogenic properties and seeding efficiency of prion peptides. Amino Acids 2013;45:785-96. [PMID: 23736988 PMCID: PMC3776267 DOI: 10.1007/s00726-013-1522-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2012] [Accepted: 05/22/2013] [Indexed: 11/28/2022]
25
Distinguishing crystal-like amyloid fibrils and glass-like amorphous aggregates from their kinetics of formation. Proc Natl Acad Sci U S A 2012;109:14446-51. [PMID: 22908252 DOI: 10.1073/pnas.1208228109] [Citation(s) in RCA: 220] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
26
Yamaguchi KI, Matsumoto T, Kuwata K. Proper calibration of ultrasonic power enabled the quantitative analysis of the ultrasonication-induced amyloid formation process. Protein Sci 2011;21:38-49. [PMID: 22095682 DOI: 10.1002/pro.755] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2011] [Revised: 10/02/2011] [Accepted: 10/07/2011] [Indexed: 12/12/2022]
27
Liao TY, Lee LYL, Chen RPY. Leu138 in bovine prion peptide fibrils is involved in seeding discrimination related to codon 129 M/V polymorphism in the prion peptide seeding experiment. FEBS J 2011;278:4351-61. [DOI: 10.1111/j.1742-4658.2011.08353.x] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
28
So M, Yagi H, Sakurai K, Ogi H, Naiki H, Goto Y. Ultrasonication-Dependent Acceleration of Amyloid Fibril Formation. J Mol Biol 2011;412:568-77. [DOI: 10.1016/j.jmb.2011.07.069] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2011] [Revised: 06/09/2011] [Accepted: 07/29/2011] [Indexed: 11/16/2022]
29
Pal P, Mahato M, Kamilya T, Tah B, Sarkar R, Talapatra GB. Fibrillation of Egg White Ovalbumin: A Pathway via Biomineralization. J Phys Chem B 2011;115:4259-65. [DOI: 10.1021/jp200607x] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
30
Li L, Feng W, Ji P. Protein adsorption on functionalized multiwalled carbon nanotubes with amino-cyclodextrin. AIChE J 2011. [DOI: 10.1002/aic.12543] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
31
Pal P, Mahato M, Kamilya T, Talapatra GB. Interaction of glucose with hemoglobin: a study in aqueous solution and at the air–water interface using the Langmuir–Blodgett technique. Phys Chem Chem Phys 2011;13:9385-96. [DOI: 10.1039/c0cp02277b] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
32
Johansson J, Nerelius C, Willander H, Presto J. Conformational preferences of non-polar amino acid residues: an additional factor in amyloid formation. Biochem Biophys Res Commun 2010;402:515-8. [PMID: 20971069 DOI: 10.1016/j.bbrc.2010.10.062] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2010] [Accepted: 10/18/2010] [Indexed: 11/18/2022]
33
Hosszu LLP, Tattum MH, Jones S, Trevitt CR, Wells MA, Waltho JP, Collinge J, Jackson GS, Clarke AR. The H187R mutation of the human prion protein induces conversion of recombinant prion protein to the PrP(Sc)-like form. Biochemistry 2010;49:8729-38. [PMID: 20718410 DOI: 10.1021/bi100572j] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
34
Zhang J. Optimal molecular structures of prion AGAAAAGA amyloid fibrils formatted by simulated annealing. J Mol Model 2010;17:173-9. [PMID: 20411399 DOI: 10.1007/s00894-010-0691-y] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2009] [Accepted: 02/11/2010] [Indexed: 02/04/2023]
35
Ji P, Tan H, Xu X, Feng W. Lipase covalently attached to multiwalled carbon nanotubes as an efficient catalyst in organic solvent. AIChE J 2010. [DOI: 10.1002/aic.12180] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
36
Ji HF, Zhang HY. beta-sheet constitution of prion proteins. Trends Biochem Sci 2010;35:129-34. [PMID: 20060302 DOI: 10.1016/j.tibs.2009.12.002] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2009] [Revised: 12/07/2009] [Accepted: 12/09/2009] [Indexed: 11/19/2022]
37
Mahato M, Pal P, Kamilya T, Sarkar R, Chaudhuri A, Talapatra GB. Influence of KCl on the interfacial activity and conformation of hemoglobin studied by Langmuir–Blodgett technique. Phys Chem Chem Phys 2010;12:12997-3006. [DOI: 10.1039/c0cp00344a] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
38
Mahato M, Pal P, Kamilya T, Sarkar R, Talapatra GB. pH Induced Structural Modulation and Interfacial Activity of Hemoglobin at the Air/Water Interface. J Phys Chem B 2009;114:495-502. [DOI: 10.1021/jp908081r] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
39
Yamamoto N, Kuwata K. Regulating the Conformation of Prion Protein through Ligand Binding. J Phys Chem B 2009;113:12853-6. [DOI: 10.1021/jp905572w] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
40
Ultrasonication-dependent production and breakdown lead to minimum-sized amyloid fibrils. Proc Natl Acad Sci U S A 2009;106:11119-24. [PMID: 19564620 DOI: 10.1073/pnas.0901422106] [Citation(s) in RCA: 98] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
41
Chebaro Y, Derreumaux P. The Conversion of Helix H2 to β-Sheet Is Accelerated in the Monomer and Dimer of the Prion Protein upon T183A Mutation. J Phys Chem B 2009;113:6942-8. [DOI: 10.1021/jp900334s] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
42
Palladino P, Ronga L, Benedetti E, Rossi F, Ragone R. Peptide Fragment Approach to Prion Misfolding: The Alpha-2 Domain. Int J Pept Res Ther 2009. [DOI: 10.1007/s10989-009-9171-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
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