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For: Ratcliff K, Corn J, Marqusee S. Structure, stability, and folding of ribonuclease H1 from the moderately thermophilic Chlorobium tepidum: comparison with thermophilic and mesophilic homologues. Biochemistry 2009;48:5890-8. [PMID: 19408959 DOI: 10.1021/bi900305p] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Number Cited by Other Article(s)
1
Martin JA, Palmer AG. Comparisons of Ribonuclease HI Homologs and Mutants Uncover a Multistate Model for Substrate Recognition. J Am Chem Soc 2022;144:5342-5349. [PMID: 35312304 PMCID: PMC9149773 DOI: 10.1021/jacs.1c11897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
2
Mahboubi-Rabbani M, Abbasi M, Hajimahdi Z, Zarghi A. HIV-1 Reverse Transcriptase/Integrase Dual Inhibitors: A Review of Recent Advances and Structure-activity Relationship Studies. IRANIAN JOURNAL OF PHARMACEUTICAL RESEARCH : IJPR 2021;20:333-369. [PMID: 34567166 PMCID: PMC8457747 DOI: 10.22037/ijpr.2021.115446.15370] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
3
Alanine to serine substitutions drive thermal adaptation in a psychrophilic diatom cytochrome c6. J Biol Inorg Chem 2020;25:489-500. [PMID: 32219554 DOI: 10.1007/s00775-020-01777-0] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2019] [Accepted: 03/16/2020] [Indexed: 10/24/2022]
4
Luo L, Lv J. Quantum protein folding. ADVANCES IN QUANTUM CHEMISTRY 2020. [DOI: 10.1016/bs.aiq.2020.01.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
5
Hyjek M, Figiel M, Nowotny M. RNases H: Structure and mechanism. DNA Repair (Amst) 2019;84:102672. [PMID: 31371183 DOI: 10.1016/j.dnarep.2019.102672] [Citation(s) in RCA: 81] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Revised: 07/05/2019] [Accepted: 07/12/2019] [Indexed: 12/11/2022]
6
Lim SA, Bolin ER, Marqusee S. Tracing a protein's folding pathway over evolutionary time using ancestral sequence reconstruction and hydrogen exchange. eLife 2018;7:38369. [PMID: 30204082 PMCID: PMC6158009 DOI: 10.7554/elife.38369] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Accepted: 09/09/2018] [Indexed: 12/15/2022]  Open
7
Lisi GP, Currier AA, Loria JP. Glutamine Hydrolysis by Imidazole Glycerol Phosphate Synthase Displays Temperature Dependent Allosteric Activation. Front Mol Biosci 2018;5:4. [PMID: 29468164 PMCID: PMC5808140 DOI: 10.3389/fmolb.2018.00004] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Accepted: 01/09/2018] [Indexed: 11/13/2022]  Open
8
Jing X, Evangelista Falcon W, Baudry J, Serpersu EH. Thermophilic Enzyme or Mesophilic Enzyme with Enhanced Thermostability: Can We Draw a Line? J Phys Chem B 2017;121:7086-7094. [DOI: 10.1021/acs.jpcb.7b04519] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
9
Quantum conformational transition in biological macromolecule. QUANTITATIVE BIOLOGY 2017. [DOI: 10.1007/s40484-016-0087-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
10
Zeiske T, Stafford KA, Palmer AG. Thermostability of Enzymes from Molecular Dynamics Simulations. J Chem Theory Comput 2016;12:2489-92. [PMID: 27123810 DOI: 10.1021/acs.jctc.6b00120] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
11
Zimmermann MT, Tischer A, Whitten ST, Auton M. Structural origins of misfolding propensity in the platelet adhesive von Willebrand factor A1 domain. Biophys J 2016. [PMID: 26200876 DOI: 10.1016/j.bpj.2015.06.008] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]  Open
12
Kovacic F, Mandrysch A, Poojari C, Strodel B, Jaeger KE. Structural features determining thermal adaptation of esterases. Protein Eng Des Sel 2016;29:65-76. [PMID: 26647400 PMCID: PMC5943684 DOI: 10.1093/protein/gzv061] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Revised: 10/26/2015] [Accepted: 10/28/2015] [Indexed: 11/14/2022]  Open
13
Thermodynamic system drift in protein evolution. PLoS Biol 2014;12:e1001994. [PMID: 25386647 PMCID: PMC4227636 DOI: 10.1371/journal.pbio.1001994] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2014] [Accepted: 10/02/2014] [Indexed: 11/19/2022]  Open
14
Stafford KA, Palmer Iii AG. Evidence from molecular dynamics simulations of conformational preorganization in the ribonuclease H active site. F1000Res 2014;3:67. [PMID: 25075292 PMCID: PMC4032109 DOI: 10.12688/f1000research.3605.1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 03/07/2014] [Indexed: 11/26/2022]  Open
15
Liu CC, LiCata VJ. The stability ofTaqDNA polymerase results from a reduced entropic folding penalty; identification of other thermophilic proteins with similar folding thermodynamics. Proteins 2013;82:785-93. [DOI: 10.1002/prot.24458] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2013] [Revised: 09/26/2013] [Accepted: 10/10/2013] [Indexed: 11/11/2022]
16
Thermal adaptation of conformational dynamics in ribonuclease H. PLoS Comput Biol 2013;9:e1003218. [PMID: 24098095 PMCID: PMC3789780 DOI: 10.1371/journal.pcbi.1003218] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2013] [Accepted: 07/24/2013] [Indexed: 11/23/2022]  Open
17
Zou T, Ozkan SB. Local and non-local native topologies reveal the underlying folding landscape of proteins. Phys Biol 2011;8:066011. [DOI: 10.1088/1478-3975/8/6/066011] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
18
Menichelli E, Edgcomb SP, Recht MI, Williamson JR. The structure of Aquifex aeolicus ribosomal protein S8 reveals a unique subdomain that contributes to an extremely tight association with 16S rRNA. J Mol Biol 2011;415:489-502. [PMID: 22079365 DOI: 10.1016/j.jmb.2011.10.046] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2011] [Revised: 10/14/2011] [Accepted: 10/26/2011] [Indexed: 12/01/2022]
19
Sawle L, Ghosh K. How do thermophilic proteins and proteomes withstand high temperature? Biophys J 2011;101:217-27. [PMID: 21723832 PMCID: PMC3127178 DOI: 10.1016/j.bpj.2011.05.059] [Citation(s) in RCA: 104] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2011] [Revised: 05/26/2011] [Accepted: 05/27/2011] [Indexed: 11/30/2022]  Open
20
Ratcliff K, Marqusee S. Identification of residual structure in the unfolded state of ribonuclease H1 from the moderately thermophilic Chlorobium tepidum: comparison with thermophilic and mesophilic homologues. Biochemistry 2010;49:5167-75. [PMID: 20491485 DOI: 10.1021/bi1001097] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
21
Okada J, Okamoto T, Mukaiyama A, Tadokoro T, You DJ, Chon H, Koga Y, Takano K, Kanaya S. Evolution and thermodynamics of the slow unfolding of hyperstable monomeric proteins. BMC Evol Biol 2010;10:207. [PMID: 20615256 PMCID: PMC2927913 DOI: 10.1186/1471-2148-10-207] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2010] [Accepted: 07/09/2010] [Indexed: 01/17/2023]  Open
22
What lessons can be learned from studying the folding of homologous proteins? Methods 2010;52:38-50. [PMID: 20570731 PMCID: PMC2965948 DOI: 10.1016/j.ymeth.2010.06.003] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2010] [Revised: 05/25/2010] [Accepted: 06/01/2010] [Indexed: 01/30/2023]  Open
23
Nick Pace C, Huyghues-Despointes BMP, Fu H, Takano K, Scholtz JM, Grimsley GR. Urea denatured state ensembles contain extensive secondary structure that is increased in hydrophobic proteins. Protein Sci 2010;19:929-43. [PMID: 20198681 PMCID: PMC2868236 DOI: 10.1002/pro.370] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2009] [Accepted: 02/08/2010] [Indexed: 11/07/2022]
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