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Buhrke D, Hildebrandt P. Probing Structure and Reaction Dynamics of Proteins Using Time-Resolved Resonance Raman Spectroscopy. Chem Rev 2019; 120:3577-3630. [PMID: 31814387 DOI: 10.1021/acs.chemrev.9b00429] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The mechanistic understanding of protein functions requires insight into the structural and reaction dynamics. To elucidate these processes, a variety of experimental approaches are employed. Among them, time-resolved (TR) resonance Raman (RR) is a particularly versatile tool to probe processes of proteins harboring cofactors with electronic transitions in the visible range, such as retinal or heme proteins. TR RR spectroscopy offers the advantage of simultaneously providing molecular structure and kinetic information. The various TR RR spectroscopic methods can cover a wide dynamic range down to the femtosecond time regime and have been employed in monitoring photoinduced reaction cascades, ligand binding and dissociation, electron transfer, enzymatic reactions, and protein un- and refolding. In this account, we review the achievements of TR RR spectroscopy of nearly 50 years of research in this field, which also illustrates how the role of TR RR spectroscopy in molecular life science has changed from the beginning until now. We outline the various methodological approaches and developments and point out current limitations and potential perspectives.
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Affiliation(s)
- David Buhrke
- Technische Universität Berlin, Institut für Chemie, Sekr. PC14, Straße des 17, Juni 135, D-10623 Berlin, Germany
| | - Peter Hildebrandt
- Technische Universität Berlin, Institut für Chemie, Sekr. PC14, Straße des 17, Juni 135, D-10623 Berlin, Germany
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Fan B, Simpson MC, Shelnutt JA, Martinez L, Falcon R, Buranda T, Pastuszyn AJ, Ondrias MR. Synthesis and Physical Characterization of Novel Heme-Based Model Systems for Photoinitiated Electron Transfer. 2. Direct Ruthenation of Microperoxidase-11. Inorg Chem 1997. [DOI: 10.1021/ic970040c] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- B. Fan
- Departments of Chemistry and Biochemistry, University of New Mexico, Albuquerque, New Mexico 87131, and Fuel Sciences Divison, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - M. C. Simpson
- Departments of Chemistry and Biochemistry, University of New Mexico, Albuquerque, New Mexico 87131, and Fuel Sciences Divison, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - J. A. Shelnutt
- Departments of Chemistry and Biochemistry, University of New Mexico, Albuquerque, New Mexico 87131, and Fuel Sciences Divison, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - L. Martinez
- Departments of Chemistry and Biochemistry, University of New Mexico, Albuquerque, New Mexico 87131, and Fuel Sciences Divison, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - R. Falcon
- Departments of Chemistry and Biochemistry, University of New Mexico, Albuquerque, New Mexico 87131, and Fuel Sciences Divison, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - T. Buranda
- Departments of Chemistry and Biochemistry, University of New Mexico, Albuquerque, New Mexico 87131, and Fuel Sciences Divison, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - A. J. Pastuszyn
- Departments of Chemistry and Biochemistry, University of New Mexico, Albuquerque, New Mexico 87131, and Fuel Sciences Divison, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - M. R. Ondrias
- Departments of Chemistry and Biochemistry, University of New Mexico, Albuquerque, New Mexico 87131, and Fuel Sciences Divison, Sandia National Laboratory, Albuquerque, New Mexico 87185
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Fan B, Fontenot DL, Larsen RW, Simpson MC, Shelnutt JA, Falcon R, Martinez L, Niu S, Zhang S, Niemczyk T, Ondrias MR. Synthesis and Physical Characterization of Novel Heme-Based Model Systems for Photoinitiated Electron Transfer. 1. Complexation of a RuProHis Bifunctional Peptide and Microperoxidase-11. Inorg Chem 1997. [DOI: 10.1021/ic9700415] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- B. Fan
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, and Fuel Sciences Division, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - D. L. Fontenot
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, and Fuel Sciences Division, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - R. W. Larsen
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, and Fuel Sciences Division, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - M. C. Simpson
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, and Fuel Sciences Division, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - J. A. Shelnutt
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, and Fuel Sciences Division, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - R. Falcon
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, and Fuel Sciences Division, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - L. Martinez
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, and Fuel Sciences Division, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - S. Niu
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, and Fuel Sciences Division, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - S. Zhang
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, and Fuel Sciences Division, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - T. Niemczyk
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, and Fuel Sciences Division, Sandia National Laboratory, Albuquerque, New Mexico 87185
| | - M. R. Ondrias
- Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87131, Life Sciences Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, Department of Chemistry, University of Hawaii, Honolulu, Hawaii 96822, and Fuel Sciences Division, Sandia National Laboratory, Albuquerque, New Mexico 87185
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Simpson MC, Peterson ES, Shannon CF, Eads DD, Friedman JM, Cheatum CM, Ondrias MR. Transient Raman Observations of Heme Electronic and Vibrational Photodynamics in Deoxyhemoglobin. J Am Chem Soc 1997. [DOI: 10.1021/ja961198j] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- M. C. Simpson
- Contribution from the Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87135, and Department of Biophysics and Physiology, Albert Einstein College of Medicine, Bronx, New York 10461
| | - E. S. Peterson
- Contribution from the Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87135, and Department of Biophysics and Physiology, Albert Einstein College of Medicine, Bronx, New York 10461
| | - C. F. Shannon
- Contribution from the Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87135, and Department of Biophysics and Physiology, Albert Einstein College of Medicine, Bronx, New York 10461
| | - D. D. Eads
- Contribution from the Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87135, and Department of Biophysics and Physiology, Albert Einstein College of Medicine, Bronx, New York 10461
| | - J. M. Friedman
- Contribution from the Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87135, and Department of Biophysics and Physiology, Albert Einstein College of Medicine, Bronx, New York 10461
| | - C. M. Cheatum
- Contribution from the Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87135, and Department of Biophysics and Physiology, Albert Einstein College of Medicine, Bronx, New York 10461
| | - M. R. Ondrias
- Contribution from the Department of Chemistry, University of New Mexico, Albuquerque, New Mexico 87135, and Department of Biophysics and Physiology, Albert Einstein College of Medicine, Bronx, New York 10461
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