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For: Adams GM, Blumenthal RM. The PvuII DNA (cytosine-N4)-methyltransferase comprises two trypsin-defined domains, each of which binds a molecule of S-adenosyl-L-methionine. Biochemistry 1997;36:8284-92. [PMID: 9204874 DOI: 10.1021/bi961885n] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Number Cited by Other Article(s)
1
Woodcock CB, Horton JR, Zhang X, Blumenthal RM, Cheng X. Beta class amino methyltransferases from bacteria to humans: evolution and structural consequences. Nucleic Acids Res 2020;48:10034-10044. [PMID: 32453412 PMCID: PMC7544214 DOI: 10.1093/nar/gkaa446] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 05/12/2020] [Accepted: 05/14/2020] [Indexed: 01/09/2023]  Open
2
Malygin EG, Hattman S. DNA methyltransferases: mechanistic models derived from kinetic analysis. Crit Rev Biochem Mol Biol 2012;47:97-193. [PMID: 22260147 DOI: 10.3109/10409238.2011.620942] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
3
Banerjee A, Rao DN. Functional analysis of an acid adaptive DNA adenine methyltransferase from Helicobacter pylori 26695. PLoS One 2011;6:e16810. [PMID: 21347417 PMCID: PMC3036652 DOI: 10.1371/journal.pone.0016810] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2010] [Accepted: 01/13/2011] [Indexed: 11/18/2022]  Open
4
Aranda J, Roca M, López-Canut V, Tuñón I. Theoretical study of the catalytic mechanism of DNA-(N4-cytosine)-methyltransferase from the bacterium Proteus vulgaris. J Phys Chem B 2010;114:8467-73. [PMID: 20524651 DOI: 10.1021/jp911036w] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
5
Malygin EG, Evdokimov AA, Hattman S. Dimeric/oligomeric DNA methyltransferases: an unfinished story. Biol Chem 2009;390:835-44. [PMID: 19453271 DOI: 10.1515/bc.2009.082] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
6
Mruk I, Blumenthal RM. Tuning the relative affinities for activating and repressing operators of a temporally regulated restriction-modification system. Nucleic Acids Res 2009;37:983-98. [PMID: 19126580 PMCID: PMC2647307 DOI: 10.1093/nar/gkn1010] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]  Open
7
Mruk I, Rajesh P, Blumenthal RM. Regulatory circuit based on autogenous activation-repression: roles of C-boxes and spacer sequences in control of the PvuII restriction-modification system. Nucleic Acids Res 2007;35:6935-52. [PMID: 17933763 PMCID: PMC2175313 DOI: 10.1093/nar/gkm837] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]  Open
8
Evdokimov AA, Sclavi B, Zinoviev VV, Malygin EG, Hattman S, Buckle M. Study of Bacteriophage T4-encoded Dam DNA (Adenine-N6)-methyltransferase Binding with Substrates by Rapid Laser UV Cross-linking. J Biol Chem 2007;282:26067-76. [PMID: 17630395 DOI: 10.1074/jbc.m700866200] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
9
Reza F, Zuo P, Tian J. Protein interfacial pocket engineering via coupled computational filtering and biological focusing criterion. Ann Biomed Eng 2007;35:1026-36. [PMID: 17453346 DOI: 10.1007/s10439-007-9316-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2006] [Accepted: 04/11/2007] [Indexed: 11/25/2022]
10
Bheemanaik S, Reddy Y, Rao D. Structure, function and mechanism of exocyclic DNA methyltransferases. Biochem J 2006;399:177-90. [PMID: 16987108 PMCID: PMC1609917 DOI: 10.1042/bj20060854] [Citation(s) in RCA: 104] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
11
Liebert K, Hermann A, Schlickenrieder M, Jeltsch A. Stopped-flow and mutational analysis of base flipping by the Escherichia coli Dam DNA-(adenine-N6)-methyltransferase. J Mol Biol 2004;341:443-54. [PMID: 15276835 DOI: 10.1016/j.jmb.2004.05.033] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2004] [Revised: 04/22/2004] [Accepted: 05/20/2004] [Indexed: 10/26/2022]
12
Hattman S, Malygin EG. Bacteriophage T2Dam and T4Dam DNA-[N6-adenine]-methyltransferases. PROGRESS IN NUCLEIC ACID RESEARCH AND MOLECULAR BIOLOGY VOLUME 77 2004;77:67-126. [PMID: 15196891 DOI: 10.1016/s0079-6603(04)77003-8] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
13
Wu X, Guarino LA. Autographa californica nucleopolyhedrovirus orf69 encodes an RNA cap (nucleoside-2'-O)-methyltransferase. J Virol 2003;77:3430-40. [PMID: 12610118 PMCID: PMC149537 DOI: 10.1128/jvi.77.6.3430-3440.2003] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
14
Lindstrom WM, Malygin EG, Ovechkina LG, Zinoviev VV, Reich NO. Functional analysis of BamHI DNA cytosine-N4 methyltransferase. J Mol Biol 2003;325:711-20. [PMID: 12507474 DOI: 10.1016/s0022-2836(02)01282-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
15
Jeltsch A. Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases. Chembiochem 2002. [PMID: 11933228 DOI: 10.1002/1439-7633(20020402)3:4%3c274::aid-cbic274%3e3.0.co;2-s] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
16
Jeltsch A. Beyond Watson and Crick: DNA methylation and molecular enzymology of DNA methyltransferases. Chembiochem 2002;3:274-93. [PMID: 11933228 DOI: 10.1002/1439-7633(20020402)3:4<274::aid-cbic274>3.0.co;2-s] [Citation(s) in RCA: 445] [Impact Index Per Article: 20.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
17
Evdokimov AA, Zinoviev VV, Malygin EG, Schlagman SL, Hattman S. Bacteriophage T4 Dam DNA-[N6-adenine]methyltransferase. Kinetic evidence for a catalytically essential conformational change in the ternary complex. J Biol Chem 2002;277:279-86. [PMID: 11687585 DOI: 10.1074/jbc.m108864200] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
18
Malygin EG, Lindstrom WM, Schlagman SL, Hattman S, Reich NO. Pre-steady state kinetics of bacteriophage T4 dam DNA-[N(6)-adenine] methyltransferase: interaction with native (GATC) or modified sites. Nucleic Acids Res 2000;28:4207-11. [PMID: 11058118 PMCID: PMC113137 DOI: 10.1093/nar/28.21.4207] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
19
Szegedi SS, Reich NO, Gumport RI. Substrate binding in vitro and kinetics of RsrI [N6-adenine] DNA methyltransferase. Nucleic Acids Res 2000;28:3962-71. [PMID: 11024176 PMCID: PMC110777 DOI: 10.1093/nar/28.20.3962] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
20
Lindstrom WM, Flynn J, Reich NO. Reconciling structure and function in HhaI DNA cytosine-C-5 methyltransferase. J Biol Chem 2000;275:4912-9. [PMID: 10671528 DOI: 10.1074/jbc.275.7.4912] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
21
O'Gara M, Zhang X, Roberts RJ, Cheng X. Structure of a binary complex of HhaI methyltransferase with S-adenosyl-L-methionine formed in the presence of a short non-specific DNA oligonucleotide. J Mol Biol 1999;287:201-9. [PMID: 10080885 DOI: 10.1006/jmbi.1999.2608] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
22
Tran PH, Korszun ZR, Cerritelli S, Springhorn SS, Lacks SA. Crystal structure of the DpnM DNA adenine methyltransferase from the DpnII restriction system of streptococcus pneumoniae bound to S-adenosylmethionine. Structure 1998;6:1563-75. [PMID: 9862809 DOI: 10.1016/s0969-2126(98)00154-3] [Citation(s) in RCA: 63] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
23
Colandene JD, Topal MD. The domain organization of NaeI endonuclease: separation of binding and catalysis. Proc Natl Acad Sci U S A 1998;95:3531-6. [PMID: 9520400 PMCID: PMC19870 DOI: 10.1073/pnas.95.7.3531] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
24
Allan BW, Beechem JM, Lindstrom WM, Reich NO. Direct real time observation of base flipping by the EcoRI DNA methyltransferase. J Biol Chem 1998;273:2368-73. [PMID: 9442083 DOI: 10.1074/jbc.273.4.2368] [Citation(s) in RCA: 81] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
25
O'Gara M, Adams GM, Gong W, Kobayashi R, Blumenthal RM, Cheng X. Expression, purification, mass spectrometry, crystallization and multiwavelength anomalous diffraction of selenomethionyl PvuII DNA methyltransferase (cytosine-N4-specific). EUROPEAN JOURNAL OF BIOCHEMISTRY 1997;247:1009-18. [PMID: 9288926 DOI: 10.1111/j.1432-1033.1997.01009.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
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