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For: Shoji S, Walker SE, Fredrick K. Ribosomal translocation: one step closer to the molecular mechanism. ACS Chem Biol 2009;4:93-107. [PMID: 19173642 DOI: 10.1021/cb8002946] [Citation(s) in RCA: 98] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Number Cited by Other Article(s)
1
McGirr T, Onar O, Jafarnejad SM. Dysregulated ribosome quality control in human diseases. FEBS J 2024. [PMID: 38949989 DOI: 10.1111/febs.17217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 05/31/2024] [Accepted: 06/20/2024] [Indexed: 07/03/2024]
2
Moore PB. On the response of elongating ribosomes to forces opposing translocation. Biophys J 2024:S0006-3495(24)00381-3. [PMID: 38845199 DOI: 10.1016/j.bpj.2024.05.032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 05/21/2024] [Accepted: 05/29/2024] [Indexed: 06/21/2024]  Open
3
Chance R, Kang AS. Eukaryotic ribosome display for antibody discovery: A review. Hum Antibodies 2024;32:107-120. [PMID: 38788063 DOI: 10.3233/hab-240001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2024]
4
Farnsworth KD. How biological codes break causal chains to enable autonomy for organisms. Biosystems 2023;232:105013. [PMID: 37657747 DOI: 10.1016/j.biosystems.2023.105013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Revised: 08/25/2023] [Accepted: 08/26/2023] [Indexed: 09/03/2023]
5
Viviano-Posadas AO, Romero-Mendoza U, Bazany-Rodríguez IJ, Velázquez-Castillo RV, Martínez-Otero D, Bautista-Renedo JM, González-Rivas N, Galindo-Murillo R, Salomón-Flores MK, Dorazco-González A. Efficient fluorescent recognition of ATP/GTP by a water-soluble bisquinolinium pyridine-2,6-dicarboxamide compound. Crystal structures, spectroscopic studies and interaction mode with DNA. RSC Adv 2022;12:27826-27838. [PMID: 36320280 PMCID: PMC9520314 DOI: 10.1039/d2ra05040d] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 09/21/2022] [Indexed: 11/04/2023]  Open
6
Bianchi-Smiraglia A, Nikiforov MA. Assessment of Intracellular GTP Levels Using Genetically Encoded Fluorescent Sensors. Methods Mol Biol 2022;2394:163-169. [PMID: 35094327 DOI: 10.1007/978-1-0716-1811-0_10] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
7
Hountondji C, Poupaert JH, Aguida B, Saga FKA, Pothier J, Créchet JB, Cocks C, Barty L, Kassehin UC, Gbaguidi FA. COVID-19: Mechanisms of the Antiviral Activities of Selective Antibiotics Targeting the Human 80S Ribosome. Open Biochem J 2021. [DOI: 10.2174/1874091x02115010038] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
8
Alboushi L, Hackett AP, Naeli P, Bakhti M, Jafarnejad SM. Multifaceted control of mRNA translation machinery in cancer. Cell Signal 2021;84:110037. [PMID: 33975011 DOI: 10.1016/j.cellsig.2021.110037] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2020] [Accepted: 05/06/2021] [Indexed: 12/15/2022]
9
Zhang BQ, Bu HL, You D, Ye BC. Acetylation of translation machinery affected protein translation in E. coli. Appl Microbiol Biotechnol 2020;104:10697-10709. [PMID: 33128612 DOI: 10.1007/s00253-020-10985-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2020] [Revised: 10/17/2020] [Accepted: 10/26/2020] [Indexed: 11/24/2022]
10
Kawaguchi D, Kodama A, Abe N, Takebuchi K, Hashiya F, Tomoike F, Nakamoto K, Kimura Y, Shimizu Y, Abe H. Phosphorothioate Modification of mRNA Accelerates the Rate of Translation Initiation to Provide More Efficient Protein Synthesis. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202007111] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
11
Kawaguchi D, Kodama A, Abe N, Takebuchi K, Hashiya F, Tomoike F, Nakamoto K, Kimura Y, Shimizu Y, Abe H. Phosphorothioate Modification of mRNA Accelerates the Rate of Translation Initiation to Provide More Efficient Protein Synthesis. Angew Chem Int Ed Engl 2020;59:17403-17407. [PMID: 32627275 DOI: 10.1002/anie.202007111] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Indexed: 01/19/2023]
12
Scopino K, Williams E, Elsayed A, Barr WA, Krizanc D, Thayer KM, Weir MP. A Ribosome Interaction Surface Sensitive to mRNA GCN Periodicity. Biomolecules 2020;10:E849. [PMID: 32503152 PMCID: PMC7357141 DOI: 10.3390/biom10060849] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2020] [Revised: 05/29/2020] [Accepted: 06/01/2020] [Indexed: 12/23/2022]  Open
13
Bazany-Rodríguez IJ, Salomón-Flores MK, Bautista-Renedo JM, González-Rivas N, Dorazco-González A. Chemosensing of Guanosine Triphosphate Based on a Fluorescent Dinuclear Zn(II)-Dipicolylamine Complex in Water. Inorg Chem 2020;59:7739-7751. [PMID: 32391691 DOI: 10.1021/acs.inorgchem.0c00777] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
14
Stouthamer CM, Kelly SE, Mann E, Schmitz-Esser S, Hunter MS. Development of a multi-locus sequence typing system helps reveal the evolution of Cardinium hertigii, a reproductive manipulator symbiont of insects. BMC Microbiol 2019;19:266. [PMID: 31775631 PMCID: PMC6882061 DOI: 10.1186/s12866-019-1638-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2019] [Accepted: 11/12/2019] [Indexed: 12/18/2022]  Open
15
Proteomic analysis revealed the survival strategy of Coxiella burnetii to doxycycline exposure. J Proteomics 2019;208:103479. [PMID: 31394312 DOI: 10.1016/j.jprot.2019.103479] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Revised: 07/19/2019] [Accepted: 08/01/2019] [Indexed: 12/25/2022]
16
Jasinski DL, Binzel DW, Guo P. One-Pot Production of RNA Nanoparticles via Automated Processing and Self-Assembly. ACS NANO 2019;13:4603-4612. [PMID: 30888787 PMCID: PMC6542271 DOI: 10.1021/acsnano.9b00649] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
17
Mohanty B, Hanson-Manful P, Finn TJ, Chambers CR, McKellar JLO, Macindoe I, Helder S, Setiyaputra S, Zhong Y, Mackay JP, Patrick WM. The uncharacterized bacterial protein YejG has the same architecture as domain III of elongation factor G. Proteins 2019;87:699-705. [PMID: 30958578 DOI: 10.1002/prot.25687] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2018] [Revised: 02/23/2019] [Accepted: 04/04/2019] [Indexed: 11/08/2022]
18
Ying L, Zhu H, Shoji S, Fredrick K. Roles of specific aminoglycoside-ribosome interactions in the inhibition of translation. RNA (NEW YORK, N.Y.) 2019;25:247-254. [PMID: 30413565 PMCID: PMC6348987 DOI: 10.1261/rna.068460.118] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2018] [Accepted: 11/06/2018] [Indexed: 05/18/2023]
19
Shi XX, Chen H, Xie P. Dynamics of tRNA dissociation in early and later cycles of translation elongation by the ribosome. Biosystems 2018;172:43-51. [PMID: 30184468 DOI: 10.1016/j.biosystems.2018.08.008] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Revised: 08/23/2018] [Accepted: 08/24/2018] [Indexed: 11/24/2022]
20
Schuller AP, Green R. Roadblocks and resolutions in eukaryotic translation. Nat Rev Mol Cell Biol 2018;19:526-541. [PMID: 29760421 PMCID: PMC6054806 DOI: 10.1038/s41580-018-0011-4] [Citation(s) in RCA: 145] [Impact Index Per Article: 24.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
21
Jia H, Wang Y, Xu S. Super-resolution force spectroscopy reveals ribosomal motion at sub-nucleotide steps. Chem Commun (Camb) 2018;54:5883-5886. [PMID: 29785422 DOI: 10.1039/c8cc02658k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
22
Makarova TM, Bogdanov AA. The Ribosome as an Allosterically Regulated Molecular Machine. BIOCHEMISTRY (MOSCOW) 2018. [PMID: 29523059 DOI: 10.1134/s0006297917130016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
23
Chen Y, Kaji A, Kaji H, Cooperman BS. The kinetic mechanism of bacterial ribosome recycling. Nucleic Acids Res 2017;45:10168-10177. [PMID: 28973468 PMCID: PMC5737721 DOI: 10.1093/nar/gkx694] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2017] [Accepted: 07/26/2017] [Indexed: 02/06/2023]  Open
24
Bianchi-Smiraglia A, Rana MS, Foley CE, Paul LM, Lipchick BC, Moparthy S, Moparthy K, Fink EE, Bagati A, Hurley E, Affronti HC, Bakin AV, Kandel ES, Smiraglia DJ, Feltri ML, Sousa R, Nikiforov MA. Internally ratiometric fluorescent sensors for evaluation of intracellular GTP levels and distribution. Nat Methods 2017;14:1003-1009. [PMID: 28869758 PMCID: PMC5636219 DOI: 10.1038/nmeth.4404] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2017] [Accepted: 07/25/2017] [Indexed: 02/07/2023]
25
Miscoding-induced stalling of substrate translocation on the bacterial ribosome. Proc Natl Acad Sci U S A 2017;114:E8603-E8610. [PMID: 28973849 DOI: 10.1073/pnas.1707539114] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
26
Endoh T, Sugimoto N. Conformational Dynamics of mRNA in Gene Expression as New Pharmaceutical Target. CHEM REC 2017;17:817-832. [DOI: 10.1002/tcr.201700016] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2017] [Indexed: 11/05/2022]
27
Translation and folding of single proteins in real time. Proc Natl Acad Sci U S A 2017;114:E4399-E4407. [PMID: 28507157 DOI: 10.1073/pnas.1617873114] [Citation(s) in RCA: 59] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]  Open
28
Computational Discovery of Putative Leads for Drug Repositioning through Drug-Target Interaction Prediction. PLoS Comput Biol 2016;12:e1005219. [PMID: 27893735 PMCID: PMC5125559 DOI: 10.1371/journal.pcbi.1005219] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2016] [Accepted: 10/21/2016] [Indexed: 12/23/2022]  Open
29
Xie P. On the pathway of ribosomal translocation. Int J Biol Macromol 2016;92:401-415. [PMID: 27431796 DOI: 10.1016/j.ijbiomac.2016.07.048] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2016] [Revised: 07/12/2016] [Accepted: 07/14/2016] [Indexed: 11/29/2022]
30
Katz A, Elgamal S, Rajkovic A, Ibba M. Non-canonical roles of tRNAs and tRNA mimics in bacterial cell biology. Mol Microbiol 2016;101:545-58. [PMID: 27169680 DOI: 10.1111/mmi.13419] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/09/2016] [Indexed: 12/27/2022]
31
Mechanical insights into ribosomal progression overcoming RNA G-quadruplex from periodical translation suppression in cells. Sci Rep 2016;6:22719. [PMID: 26948955 PMCID: PMC4780275 DOI: 10.1038/srep22719] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2015] [Accepted: 02/18/2016] [Indexed: 01/10/2023]  Open
32
Multiperspective smFRET reveals rate-determining late intermediates of ribosomal translocation. Nat Struct Mol Biol 2016;23:333-41. [PMID: 26926435 PMCID: PMC4821728 DOI: 10.1038/nsmb.3177] [Citation(s) in RCA: 88] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2015] [Accepted: 01/25/2016] [Indexed: 12/04/2022]
33
Modeling Ribosomal Translocation Facilitated by Peptidyl Transferase Antibiotics. Cell Mol Bioeng 2016. [DOI: 10.1007/s12195-016-0433-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]  Open
34
Endoh T, Hnedzko D, Rozners E, Sugimoto N. Nucleobase-Modified PNA Suppresses Translation by Forming a Triple Helix with a Hairpin Structure in mRNA In Vitro and in Cells. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201505938] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
35
Endoh T, Hnedzko D, Rozners E, Sugimoto N. Nucleobase-Modified PNA Suppresses Translation by Forming a Triple Helix with a Hairpin Structure in mRNA In Vitro and in Cells. Angew Chem Int Ed Engl 2015;55:899-903. [PMID: 26473504 DOI: 10.1002/anie.201505938] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2015] [Revised: 09/08/2015] [Indexed: 11/11/2022]
36
Xie P. Ribosome utilizes the minimum free energy changes to achieve the highest decoding rate and fidelity. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015;92:022716. [PMID: 26382441 DOI: 10.1103/physreve.92.022716] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2015] [Indexed: 06/05/2023]
37
Achenbach J, Nierhaus KH. The mechanics of ribosomal translocation. Biochimie 2015;114:80-9. [DOI: 10.1016/j.biochi.2014.12.003] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2014] [Accepted: 12/05/2014] [Indexed: 11/16/2022]
38
Gebre AA, Okada H, Kim C, Kubo K, Ohnuki S, Ohya Y. Profiling of the effects of antifungal agents on yeast cells based on morphometric analysis. FEMS Yeast Res 2015;15:fov040. [DOI: 10.1093/femsyr/fov040] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/01/2015] [Indexed: 12/14/2022]  Open
39
Thompson CDK, Sharma AK, Frank J, Gonzalez RL, Chowdhury D. Quantitative Connection between Ensemble Thermodynamics and Single-Molecule Kinetics: A Case Study Using Cryogenic Electron Microscopy and Single-Molecule Fluorescence Resonance Energy Transfer Investigations of the Ribosome. J Phys Chem B 2015;119:10888-10901. [PMID: 25785884 DOI: 10.1021/jp5128805] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
40
Overexpression of ribosome elongation factor G and recycling factor increases L-isoleucine production in Corynebacterium glutamicum. Appl Microbiol Biotechnol 2015;99:4795-805. [PMID: 25707863 DOI: 10.1007/s00253-015-6458-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2014] [Revised: 02/02/2015] [Accepted: 02/03/2015] [Indexed: 10/24/2022]
41
Khisamutdinov EF, Bui MNH, Jasinski D, Zhao Z, Cui Z, Guo P. Simple Method for Constructing RNA Triangle, Square, Pentagon by Tuning Interior RNA 3WJ Angle from 60° to 90° or 108°. Methods Mol Biol 2015;1316:181-93. [PMID: 25967062 DOI: 10.1007/978-1-4939-2730-2_15] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
42
Xie P. Biphasic character of ribosomal translocation and non-Michaelis-Menten kinetics of translation. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2014;90:062703. [PMID: 25615125 DOI: 10.1103/physreve.90.062703] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2014] [Indexed: 06/04/2023]
43
Xie P. Origin of multiple intersubunit rotations before EF-G-catalyzed ribosomal translocation through the mRNA with a downstream secondary structure. BMC BIOPHYSICS 2014. [DOI: 10.1186/s13628-014-0012-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
44
Salsi E, Farah E, Netter Z, Dann J, Ermolenko DN. Movement of elongation factor G between compact and extended conformations. J Mol Biol 2014;427:454-67. [PMID: 25463439 DOI: 10.1016/j.jmb.2014.11.010] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2014] [Revised: 10/28/2014] [Accepted: 11/10/2014] [Indexed: 11/19/2022]
45
The ribosome uses cooperative conformational changes to maximize and regulate the efficiency of translation. Proc Natl Acad Sci U S A 2014;111:12073-8. [PMID: 25085895 DOI: 10.1073/pnas.1401864111] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
46
Xie P. Model of EF4-induced ribosomal state transitions and mRNA translocation. Phys Biol 2014;11:046007. [PMID: 25051338 DOI: 10.1088/1478-3975/11/4/046007] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
47
Ishida H, Matsumoto A. Free-energy landscape of reverse tRNA translocation through the ribosome analyzed by electron microscopy density maps and molecular dynamics simulations. PLoS One 2014;9:e101951. [PMID: 24999999 PMCID: PMC4084982 DOI: 10.1371/journal.pone.0101951] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2013] [Accepted: 06/12/2014] [Indexed: 01/11/2023]  Open
48
Xie P. Dynamics of tRNA translocation, mRNA translocation and tRNA dissociation during ribosome translation through mRNA secondary structures. EUROPEAN BIOPHYSICS JOURNAL: EBJ 2014;43:229-40. [DOI: 10.1007/s00249-014-0957-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2013] [Revised: 03/28/2014] [Accepted: 03/31/2014] [Indexed: 11/28/2022]
49
Yamamoto H, Qin Y, Achenbach J, Li C, Kijek J, Spahn CMT, Nierhaus KH. EF-G and EF4: translocation and back-translocation on the bacterial ribosome. Nat Rev Microbiol 2013;12:89-100. [PMID: 24362468 DOI: 10.1038/nrmicro3176] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Peske F, Wintermeyer W. Antibiotics Inhibiting the Translocation Step of Protein Elongation on the Ribosome. Antibiotics (Basel) 2013. [DOI: 10.1002/9783527659685.ch21] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]  Open
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