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Dankers C, Tadros J, Harman DG, Aldrich-Wright JR, Nguyen TV, Gordon CP. Immobilized Carbodiimide Assisted Flow Combinatorial Protocol to Facilitate Amide Coupling and Lactamization. ACS COMBINATORIAL SCIENCE 2020; 22:255-267. [PMID: 32283009 DOI: 10.1021/acscombsci.0c00001] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Through a screen of over one hundred and 30 permutations of reaction temperatures, solvents, carbodiimide resins, and carbodiimide molar equivalences, in the presence, absence, or combination of diisopropylamine and benzotriazole additives, a convenient and first reported carbodiimide polymer-assisted flow approach to effect amide coupling and lactamization was developed. The protocol entails injecting a single solution (1:9 dimethylformamide: dichloromethane) containing a carboxylic acid and an amine or linear peptide sequence into a continuous stream of dichloromethane. The protocol remained viable in the absence of base, did not require carboxylate preactivation which, and in concert with minimal workup requirements, enabled the isolation of products in high yields. Compared to the utilization of untethered carbodiimide reagents, the flow procedure was also observed to provide a degree of racemization safety.
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Affiliation(s)
- Christian Dankers
- School of Science, Western Sydney University, Locked Bag, Penrith South DC, Sydney, New South Wales 1797, Australia
| | - Joseph Tadros
- School of Science, Western Sydney University, Locked Bag, Penrith South DC, Sydney, New South Wales 1797, Australia
| | - David G. Harman
- School of Medicine, Western Sydney University, Building 30, Goldsmith Avenue, Campbelltown, New South Wales 2560, Australia
- Molecular Medicine Research Group, School of Medicine, Western Sydney University, Building 30, Goldsmith Avenue, Campbelltown, New South Wales 2560, Australia
| | - Janice R. Aldrich-Wright
- School of Science, Western Sydney University, Locked Bag, Penrith South DC, Sydney, New South Wales 1797, Australia
- Nanoscale Organization and Dynamics Group, Western Sydney University, Campbelltown, New South Wales 2560, Australia
| | - Thanh V. Nguyen
- School of Chemistry, University of New South Wales, Sydney New South Wales 2052, Australia
| | - Christopher P. Gordon
- School of Science, Western Sydney University, Locked Bag, Penrith South DC, Sydney, New South Wales 1797, Australia
- Molecular Medicine Research Group, School of Medicine, Western Sydney University, Building 30, Goldsmith Avenue, Campbelltown, New South Wales 2560, Australia
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2
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Helgren TR, Seven ES, Chen C, Edwards TE, Staker BL, Abendroth J, Myler PJ, Horn JR, Hagen TJ. The identification of inhibitory compounds of Rickettsia prowazekii methionine aminopeptidase for antibacterial applications. Bioorg Med Chem Lett 2018; 28:1376-1380. [PMID: 29551481 PMCID: PMC5908248 DOI: 10.1016/j.bmcl.2018.03.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2017] [Revised: 02/28/2018] [Accepted: 03/01/2018] [Indexed: 11/25/2022]
Abstract
Methionine aminopeptidase (MetAP) is a dinuclear metalloprotease responsible for the cleavage of methionine initiator residues from nascent proteins. MetAP activity is necessary for bacterial proliferation and is therefore a projected novel antibacterial target. A compound library consisting of 294 members containing metal-binding functional groups was screened against Rickettsia prowazekii MetAP to determine potential inhibitory motifs. The compounds were first screened against the target at a concentration of 10 µM and potential hits were determined to be those exhibiting greater than 50% inhibition of enzymatic activity. These hit compounds were then rescreened against the target in 8-point dose-response curves and 11 compounds were found to inhibit enzymatic activity with IC50 values of less than 10 µM. Finally, compounds (1-5) were docked against RpMetAP with AutoDock to determine potential binding mechanisms and the results were compared with crystal structures deposited within the PDB.
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Affiliation(s)
- Travis R Helgren
- Department of Chemistry and Biochemistry, Northern Illinois University, 1425 W. Lincoln Hwy, DeKalb, IL 60115, USA
| | - Elif S Seven
- Department of Chemistry and Biochemistry, Northern Illinois University, 1425 W. Lincoln Hwy, DeKalb, IL 60115, USA
| | - Congling Chen
- Department of Chemistry and Biochemistry, Northern Illinois University, 1425 W. Lincoln Hwy, DeKalb, IL 60115, USA
| | - Thomas E Edwards
- Beryllium Discovery Corp., 7869 NE Day Road West, Bainbridge Island, WA 98110, USA; Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, WA, USA
| | - Bart L Staker
- Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, WA, USA; Center for Infectious Disease Research, Formerly Seattle Biomedical Research Institute, 307 Westlake Avenue N., Seattle, WA 98109, USA
| | - Jan Abendroth
- Beryllium Discovery Corp., 7869 NE Day Road West, Bainbridge Island, WA 98110, USA; Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, WA, USA
| | - Peter J Myler
- Seattle Structural Genomics Center for Infectious Disease (SSGCID), Seattle, WA, USA; Center for Infectious Disease Research, Formerly Seattle Biomedical Research Institute, 307 Westlake Avenue N., Seattle, WA 98109, USA
| | - James R Horn
- Department of Chemistry and Biochemistry, Northern Illinois University, 1425 W. Lincoln Hwy, DeKalb, IL 60115, USA
| | - Timothy J Hagen
- Department of Chemistry and Biochemistry, Northern Illinois University, 1425 W. Lincoln Hwy, DeKalb, IL 60115, USA.
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Cherkupally P, Ramesh S, de la Torre BG, Govender T, Kruger HG, Albericio F. Immobilized coupling reagents: synthesis of amides/peptides. ACS COMBINATORIAL SCIENCE 2014; 16:579-601. [PMID: 25330282 DOI: 10.1021/co500126y] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The primary idea of using immobilized reagents in organic synthetic chemistry is to simplify the downstream process, product workup and isolation, and therefore avoiding time-consuming and expensive chromatographic separations, which are intrinsic to every synthetic process. Numerous polymer-bounded reagents are commercially available and applicable to almost all kinds of synthetic chemistry conversions. Herein, we have covered all known supported-coupling reagents and bases which have had a great impact in amide/peptide bond formation. These coupling reagents have been used for the activation of a carboxyl moiety; thus generating an active acylating species that is ready to couple with an amine nucleophile liberating the amide/peptide and polymeric support which can be regenerated for reuse. This also addresses a large variety of anchored coupling reagents, additives, and bases that have only been employed in amide/peptide syntheses during the last six decades.
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Affiliation(s)
- Prabhakar Cherkupally
- Catalysis and Peptide Research Unit, School of Health Sciences, University of Kwazulu-Natal, Durban 4001, South Africa
| | - Suhas Ramesh
- Catalysis and Peptide Research Unit, School of Health Sciences, University of Kwazulu-Natal, Durban 4001, South Africa
| | - Beatriz G. de la Torre
- Catalysis and Peptide Research Unit, School of Health Sciences, University of Kwazulu-Natal, Durban 4001, South Africa
- School of Chemistry, Yachay Tech, Yachay City of Knowledge, 100119 Urcuqui, Ecuador
| | - Thavendran Govender
- Catalysis and Peptide Research Unit, School of Health Sciences, University of Kwazulu-Natal, Durban 4001, South Africa
| | - Hendrik G. Kruger
- Catalysis and Peptide Research Unit, School of Health Sciences, University of Kwazulu-Natal, Durban 4001, South Africa
| | - Fernando Albericio
- Catalysis and Peptide Research Unit, School of Health Sciences, University of Kwazulu-Natal, Durban 4001, South Africa
- School of Chemistry, Yachay Tech, Yachay City of Knowledge, 100119 Urcuqui, Ecuador
- School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4001, South Africa
- Institute for Research in Biomedicine-Barcelona (IRB-Barcelona), 08028 Barcelona, Spain
- CIBER-BBN, Networking Centre on Bioengineering, Biomaterials and Nanomedicine, Barcelona Science Park, 08028 Barcelona, Spain
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Cui ZN, Shi YX, Zhang L, Ling Y, Li BJ, Nishida Y, Yang XL. Synthesis and fungicidal activity of novel 2,5-disubstituted-1,3,4-oxadiazole derivatives. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2012; 60:11649-11656. [PMID: 23134289 DOI: 10.1021/jf303807a] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
A novel series of 1,3,4-oxadiazole derivatives containing a 5-phenyl-2-furan moiety were synthesized from the intermediates diacylhydrazine 3 and acylhydrazone 5 via an efficient approach under microwave irradiation in good yields. Their structures were characterized by IR, (1)H NMR, and elemental analysis. The antifungal tests indicated that the title compounds showed in vivo fungicidal activity against Botrytis cinerea and Rhizoctonia solanii at 500 μg/mL obviously. Some tested compounds even had a superiority effect over the commercial fungicides 40% Pyrimethanil SC and 3% Validamycin AS. The activity between the title compound and their precursors diacylhydrazine 3 and acylhydrazone 5 was also compared and discussed.
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Affiliation(s)
- Zi-Ning Cui
- Department of Applied Chemistry, College of Science, China Agricultural University, Beijing, 100193, People's Republic of China
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Laidaoui N, Roger J, Miloudi A, El Abed D, Doucet H. Palladium-Catalyzed Direct Arylations of Five-Membered Heteroarenes Bearing N-Monoalkylcarboxamide Substituents. European J Org Chem 2011. [DOI: 10.1002/ejoc.201100312] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Long TR, Faisal S, Maity PK, Rolfe A, Kurtz R, Klimberg SV, Najjar MR, Basha FZ, Hanson PR. "Click"-capture, ring-opening metathesis polymerization (ROMP), release: facile triazolation utilizing ROMP-derived oligomeric phosphates. Org Lett 2011; 13:2038-41. [PMID: 21434675 PMCID: PMC3098766 DOI: 10.1021/ol200430c] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Soluble, high-load ring-opening metathesis polymerization (ROMP)-derived oligomeric triazole phosphates (OTP) are reported for application as efficient triazolating reagents of nucleophilic species. Utilizing a "Click"-capture, ROMP, release protocol, the efficient and purification-free, direct triazolation of N-, O-, and S-nucleophilic species was successfully achieved. A variety of OTP derivatives were rapidly synthesized as free-flowing solids on a multigram scale from commercially available materials.
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Affiliation(s)
- Toby R. Long
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS, 66045 and The University of Kansas Center for Chemical Methodologies and Library Development (KU-CMLD), 2034 Becker Drive, Delbert M. Shankel Structural Biology Center, Lawrence, KS, 66047
| | - Saqib Faisal
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS, 66045 and The University of Kansas Center for Chemical Methodologies and Library Development (KU-CMLD), 2034 Becker Drive, Delbert M. Shankel Structural Biology Center, Lawrence, KS, 66047
- H. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Science, University of Karachi, Karachi, Pakistan
| | - Pradip K. Maity
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS, 66045 and The University of Kansas Center for Chemical Methodologies and Library Development (KU-CMLD), 2034 Becker Drive, Delbert M. Shankel Structural Biology Center, Lawrence, KS, 66047
| | - Alan Rolfe
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS, 66045 and The University of Kansas Center for Chemical Methodologies and Library Development (KU-CMLD), 2034 Becker Drive, Delbert M. Shankel Structural Biology Center, Lawrence, KS, 66047
| | - Ryan Kurtz
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS, 66045 and The University of Kansas Center for Chemical Methodologies and Library Development (KU-CMLD), 2034 Becker Drive, Delbert M. Shankel Structural Biology Center, Lawrence, KS, 66047
| | - Sarra V. Klimberg
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS, 66045 and The University of Kansas Center for Chemical Methodologies and Library Development (KU-CMLD), 2034 Becker Drive, Delbert M. Shankel Structural Biology Center, Lawrence, KS, 66047
| | - Muhammad-Rabbie Najjar
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS, 66045 and The University of Kansas Center for Chemical Methodologies and Library Development (KU-CMLD), 2034 Becker Drive, Delbert M. Shankel Structural Biology Center, Lawrence, KS, 66047
| | - Fatima Z. Basha
- H. E. J. Research Institute of Chemistry, International Center for Chemical and Biological Science, University of Karachi, Karachi, Pakistan
| | - Paul R. Hanson
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS, 66045 and The University of Kansas Center for Chemical Methodologies and Library Development (KU-CMLD), 2034 Becker Drive, Delbert M. Shankel Structural Biology Center, Lawrence, KS, 66047
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Long TR, Maity PK, Samarakoon TB, Hanson PR. ROMP-derived oligomeric phosphates for application in facile benzylation. Org Lett 2010; 12:2904-7. [PMID: 20521800 PMCID: PMC2925234 DOI: 10.1021/ol1006604] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The development of new ROMP-based oligomeric benzyl phosphates (OBP(n)) is reported for use as soluble, stable benzylating reagents. These oligomeric reagents are readily synthesized from commercially available materials and conveniently polymerized and purified in a one-pot process, affording bench-stable, pure white, free-flowing solids on multigram scale. Utilization in benzylation reactions with a variety of nucleophiles is reported.
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Affiliation(s)
- Toby R. Long
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS 66045-7582
- The Center for Chemical Methodologies and Library Development at the University of Kansas (KU-CMLD), 2034 Becker Drive, Del Shankel Structural Biology Center, Lawrence, KS 66047
| | - Pradip K. Maity
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS 66045-7582
| | - Thiwanka B. Samarakoon
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS 66045-7582
| | - Paul R. Hanson
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, KS 66045-7582
- The Center for Chemical Methodologies and Library Development at the University of Kansas (KU-CMLD), 2034 Becker Drive, Del Shankel Structural Biology Center, Lawrence, KS 66047
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Lu J, Toy PH. Organic polymer supports for synthesis and for reagent and catalyst immobilization. Chem Rev 2009; 109:815-38. [PMID: 19128147 DOI: 10.1021/cr8004444] [Citation(s) in RCA: 532] [Impact Index Per Article: 35.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Affiliation(s)
- Jinni Lu
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong, People's Republic of China
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9
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Bergbreiter DE, Tian J, Hongfa C. Using Soluble Polymer Supports To Facilitate Homogeneous Catalysis. Chem Rev 2009; 109:530-82. [DOI: 10.1021/cr8004235] [Citation(s) in RCA: 314] [Impact Index Per Article: 20.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- David E. Bergbreiter
- Department of Chemistry, Texas A&M University, P.O. Box 30012, College Station, Texas 77842-3012
| | - Jianhua Tian
- Department of Chemistry, Texas A&M University, P.O. Box 30012, College Station, Texas 77842-3012
| | - Chayanant Hongfa
- Department of Chemistry, Texas A&M University, P.O. Box 30012, College Station, Texas 77842-3012
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Solinas R, DiCesare JC, Baures PW. Parallel synthesis of an imidazole-4,5-dicarboxamide library bearing amino acid esters and alkanamines. Molecules 2008; 13:3149-70. [PMID: 19078856 PMCID: PMC2651155 DOI: 10.3390/molecules13123149] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2008] [Revised: 12/11/2008] [Accepted: 12/12/2008] [Indexed: 01/09/2023] Open
Abstract
The imidazole-4,5-dicarboxylic acid scaffold is readily derivatized with amino acid esters and alkanamines to afford compounds with intramolecularly hydrogen bonded conformations that mimic substituted purines and therefore are hypothesized to be potential inhibitors of kinases through competitive binding to the ATP site. In this work, a total of 126 dissymmetrically disubstituted imidazole-4,5-dicarboxamides with amino acid ester and alkanamide substituents were prepared by parallel synthesis. The library members were purified by column chromatography on silica gel and the purified compounds characterized by LC-MS with LC detection at 214 nm. A selection of the final compounds was also analyzed by (1)H-NMR spectroscopy. The analytically pure final products have been submitted to the Molecular Library Small Molecule Repository (MLSMR) for screening in the Molecular Library Screening Center Network (MLSCN) as part of the NIH Roadmap.
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Affiliation(s)
- Rosanna Solinas
- Department of Chemistry and Biochemistry, The University of Tulsa, 800 South Tucker Drive, Tulsa, OK 74104, USA.
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Stoianova DS, Yao L, Rolfe A, Samarakoon T, Hanson PR. High-load, oligomeric monoamine hydrochloride: Facile generation via ROM polymerization and application as an electrophile scavenger. Tetrahedron Lett 2008; 49:4553-4555. [PMID: 19319202 DOI: 10.1016/j.tetlet.2008.05.011] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A new high-load, oligomeric monoamine hydrochloride (OMAm*HCl) derived from ring-opening metathesis polymerization (ROMP) of norbornene methylamine is reported. This oligomeric amine has been shown to be an effective scavenger of acid chlorides, sulfonyl chlorides and isocyanates. The reagent can be synthesized in a straightforward protocol from the Diels-Alder reaction of dicyclopentadiene (DCPD) 1 with allylamine (neat), formation of the corresponding ammonium salt and subsequent ROM polymerization to afford the desired oligomeric ammonium salts.
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Vedantham P, Guerra JM, Schoenen F, Huang M, Gor PJ, Georg GI, Wang JL, Neuenswander B, Lushington GH, Mitscher LA, Ye QZ, Hanson PR. Ionic immobilization, diversification, and release: application to the generation of a library of methionine aminopeptidase inhibitors. ACTA ACUST UNITED AC 2007; 10:185-94. [PMID: 18163595 DOI: 10.1021/cc700085c] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Development of an ionic immobilization, diversification, and release method for the generation of methionine aminopeptidase inhibitors is reported. This method involves the immobilization of 5-bromofuran-2-carboxylic acid and 5-bromothiophene-2-carboxylic acid onto PS-BEMP, followed by Suzuki reaction on a resin-bound intermediate and subsequent release to provide products in moderate yields and excellent purities. Compound potencies were evaluated on the Co(II), Mn(II), Ni(II), and Fe(II) forms of Escherichia coli MetAP1. The furoic-acid analogs were found to be Mn(II) selective with IC 50 values in the low micromolar range. Qualitative SAR analysis, supplemented by molecular modeling studies, provides valuable information on structural elements responsible for potency and selectivity.
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Affiliation(s)
- Punitha Vedantham
- Department of Chemistry, University of Kansas, 1251 Wescoe Hall Drive, Lawrence, Kansas 66045, USA
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