1
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Multicomponent reaction derived small di- and tri-carbohydrate-based glycomimetics as tools for probing lectin specificity. Glycoconj J 2022; 39:587-597. [PMID: 36001188 DOI: 10.1007/s10719-022-10079-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Revised: 07/14/2022] [Accepted: 08/10/2022] [Indexed: 11/04/2022]
Abstract
Lectins, carbohydrate-binding proteins, play important functions in all forms of life from bacteria and viruses to plants, animals, and humans, participating in cell-cell communication and pathogen binding. In an attempt to modify lectin functions, artificial lectin ligands were made usually as big dendrimeric or cluster multivalent glycomimetic structures. Here we synthesized a novel set of glycomimetic ligands through protection/deprotection multicomponent reactions (MCR) approach. Multivalent di-and tri-carbohydrate glycomimetics containing D-fructose, D-galactose, and D-allose moieties were prepared in 63-96% yield. MCR glycomimetics demonstrated different binding abilities for plant lectins Con A and UEA I, and human galectin-3. Information gained about the influence of molecule structure, multivalency and optical purity on the lectin binding ability can be used in lectin detection and sensitivity measurements to further facilitate understanding of carbohydrate recognition process.
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2
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Jakas A, Višnjevac A, Jerić I. Multicomponent Approach to Homo- and Hetero-Multivalent Glycomimetics Bearing Rare Monosaccharides. J Org Chem 2020; 85:3766-3787. [DOI: 10.1021/acs.joc.9b03401] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Andreja Jakas
- Division of Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia
| | - Aleksandar Višnjevac
- Division of Physical Chemistry, Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia
| | - Ivanka Jerić
- Division of Organic Chemistry and Biochemistry, Ruđer Bošković Institute, Bijenička cesta 54, 10000 Zagreb, Croatia
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3
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Pifferi C, Daskhan GC, Fiore M, Shiao TC, Roy R, Renaudet O. Aminooxylated Carbohydrates: Synthesis and Applications. Chem Rev 2017; 117:9839-9873. [PMID: 28682060 DOI: 10.1021/acs.chemrev.6b00733] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Among other classes of biomolecules, carbohydrates and glycoconjugates are widely involved in numerous biological functions. In addition to addressing the related synthetic challenges, glycochemists have invested intense efforts in providing access to structures that can be used to study, activate, or inhibit these biological processes. Over the past few decades, aminooxylated carbohydrates have been found to be key building blocks for achieving these goals. This review provides the first in-depth overview covering several aspects related to the syntheses and applications of aminooxylated carbohydrates. After a brief introduction to oxime bonds and their relative stabilities compared to related C═N functions, synthetic aspects of oxime ligation and methodologies for introducing the aminooxy functionality onto both glycofuranosyls and glycopyranosyls are described. The subsequent section focuses on biological applications involving aminooxylated carbohydrates as components for the construcion of diverse architectures. Mimetics of natural structures represent useful tools for better understanding the features that drive carbohydrate-receptor interaction, their biological output and they also represent interesting structures with improved stability and tunable properties. In the next section, multivalent structures such as glycoclusters and glycodendrimers obtained through oxime ligation are described in terms of synthetic design and their biological applications such as immunomodulators. The second-to-last section discusses miscellaneous applications of oxime-based glycoconjugates, such as enantioselective catalysis and glycosylated oligonucleotides, and conclusions and perspectives are provided in the last section.
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Affiliation(s)
- Carlo Pifferi
- Université Grenoble Alpes, CNRS, DCM UMR 5250 , F-38000 Grenoble, France
| | - Gour Chand Daskhan
- Université Grenoble Alpes, CNRS, DCM UMR 5250 , F-38000 Grenoble, France
| | - Michele Fiore
- Université Grenoble Alpes, CNRS, DCM UMR 5250 , F-38000 Grenoble, France
| | - Tze Chieh Shiao
- Pharmaqam, Department of Chemistry, Université du Québec à Montreal , P.O. Box 8888, Succursale Centre-ville, Montréal, Québec H3C 3P8, Canada
| | - René Roy
- Pharmaqam, Department of Chemistry, Université du Québec à Montreal , P.O. Box 8888, Succursale Centre-ville, Montréal, Québec H3C 3P8, Canada
| | - Olivier Renaudet
- Université Grenoble Alpes, CNRS, DCM UMR 5250 , F-38000 Grenoble, France.,Institut Universitaire de France , 103 Boulevard Saint-Michel, 75005 Paris, France
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4
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Meyer A, Noël M, Vasseur JJ, Morvan F. Hetero-Click Conjugation of Oligonucleotides with Glycosides Using Bifunctional Phosphoramidites. European J Org Chem 2015. [DOI: 10.1002/ejoc.201500165] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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5
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Daskhan GC, Berthet N, Thomas B, Fiore M, Renaudet O. Multivalent glycocyclopeptides: toward nano-sized glycostructures. Carbohydr Res 2015; 405:13-22. [DOI: 10.1016/j.carres.2014.07.017] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2014] [Revised: 07/18/2014] [Accepted: 07/21/2014] [Indexed: 10/25/2022]
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6
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Ponader D, Maffre P, Aretz J, Pussak D, Ninnemann NM, Schmidt S, Seeberger PH, Rademacher C, Nienhaus GU, Hartmann L. Carbohydrate-Lectin Recognition of Sequence-Defined Heteromultivalent Glycooligomers. J Am Chem Soc 2014; 136:2008-16. [DOI: 10.1021/ja411582t] [Citation(s) in RCA: 103] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Daniela Ponader
- Max Planck Institute of Colloids and Interfaces, Research Campus Golm, Am Mühlenberg 1, 14424 Potsdam, Germany
| | - Pauline Maffre
- Institute
of Applied Physics, Karlsruhe Institute of Technology (KIT), Wolfgang-Gaede-Strasse 1, 76131 Karlsruhe, Germany
| | - Jonas Aretz
- Max Planck Institute of Colloids and Interfaces, Research Campus Golm, Am Mühlenberg 1, 14424 Potsdam, Germany
| | - Daniel Pussak
- Max Planck Institute of Colloids and Interfaces, Research Campus Golm, Am Mühlenberg 1, 14424 Potsdam, Germany
| | - Nina M. Ninnemann
- Max Planck Institute of Colloids and Interfaces, Research Campus Golm, Am Mühlenberg 1, 14424 Potsdam, Germany
| | - Stephan Schmidt
- Institut für
Biochemie, Universität Leipzig, Johannisallee
21-23, 04103 Leipzig, Germany
| | - Peter H. Seeberger
- Max Planck Institute of Colloids and Interfaces, Research Campus Golm, Am Mühlenberg 1, 14424 Potsdam, Germany
| | - Christoph Rademacher
- Max Planck Institute of Colloids and Interfaces, Research Campus Golm, Am Mühlenberg 1, 14424 Potsdam, Germany
| | - G. Ulrich Nienhaus
- Institute
of Applied Physics, Karlsruhe Institute of Technology (KIT), Wolfgang-Gaede-Strasse 1, 76131 Karlsruhe, Germany
- Department
of Physics, University of Illinois at Urbana−Champaign, 1110 West Green Street, Urbana, Illinois 61801, United States
| | - Laura Hartmann
- Max Planck Institute of Colloids and Interfaces, Research Campus Golm, Am Mühlenberg 1, 14424 Potsdam, Germany
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7
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Jiménez Blanco JL, Ortiz Mellet C, García Fernández JM. Multivalency in heterogeneous glycoenvironments: hetero-glycoclusters, -glycopolymers and -glycoassemblies. Chem Soc Rev 2013; 42:4518-31. [PMID: 22911174 DOI: 10.1039/c2cs35219b] [Citation(s) in RCA: 134] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
Despite efficiently imitating functional ligand presentations in terms of valency and density, most of the reported multivalent carbohydrate prototypes barely reflect the inherent heterogeneity of biological systems, therefore underestimating the potential contribution of synergistic or antagonistic effects to molecular recognition events. To address this question, the design of novel molecular and supramolecular entities displaying different saccharide motifs in a controlled manner is of critical importance. In this review we highlight the current efforts made to synthesize heteromultivalent glycosystems on different platforms (peptides, dendrimers, polymers, oligonucleotides, calixarenes, cyclodextrins, microarrays, vesicles) and to evaluate the influence of heterogeneity in carbohydrate-protein (lectin, antibody) recognition phenomena. Although the number of publications on this topic is limited as compared to the huge volume of reports on homomultivalent sugar displays, the current body of results has already unravelled the existence of new binding mechanisms that operate in heterogeneous environments whose exact biological significance remains to be unveiled.
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Affiliation(s)
- José L Jiménez Blanco
- Departamento de Química Orgánica, Facultad de Química, Universidad de Sevilla, Apartado 553, E-41071 Sevilla, Spain.
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8
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Fiore M, Thomas B, Duléry V, Dumy P, Renaudet O. Synthesis of multi-antigenic platforms as vaccine candidates against cancers. NEW J CHEM 2013. [DOI: 10.1039/c2nj40972k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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9
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Abstract
Because of the importance of carbohydrate-protein interactions in biological processes, the development of glycoclusters and glycodendrimers capable of mimicking the multivalent display of carbohydrates at the cell surface has become a major field of research over the last decade. Among the large variety of scaffolds that are now available, peptides and cyclopeptides are widely used for the multivalent presentation of glycans. This review will provide an overview of the most recent advances in the preparation and utilization of linear glycopeptides and glycocyclopeptides in glycobiology.
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Affiliation(s)
- M Carmen Galan
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK
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10
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Thomas B, Fiore M, Bossu I, Dumy P, Renaudet O. Synthesis of heteroglycoclusters by using orthogonal chemoselective ligations. Beilstein J Org Chem 2012; 8:421-7. [PMID: 22509212 PMCID: PMC3326620 DOI: 10.3762/bjoc.8.47] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2012] [Accepted: 02/29/2012] [Indexed: 12/20/2022] Open
Abstract
Synthetic heteroglycoclusters are being subjected to increasing interest due to their potential to serve as selective ligands for carbohydrate-binding proteins. In this paper, we describe an expedient strategy to prepare cyclopeptides displaying well-defined distributions and combinations of carbohydrates. By using both oxime ligation and copper(I)-catalyzed alkyne–azide cycloaddition, two series of compounds bearing binary combinations of αMan, αFuc or βLac in an overall tetravalent presentation, and either 2:2 or 3:1 relative proportions, have been prepared.
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Affiliation(s)
- Baptiste Thomas
- Département de Chimie Moléculaire, UMR-CNRS 5250 & ICMG FR 2607, Université Joseph Fourier, PB 53, 38041 Grenoble Cedex 9, France
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11
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Harvey DJ. Analysis of carbohydrates and glycoconjugates by matrix-assisted laser desorption/ionization mass spectrometry: an update for 2007-2008. MASS SPECTROMETRY REVIEWS 2012; 31:183-311. [PMID: 21850673 DOI: 10.1002/mas.20333] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2010] [Revised: 01/04/2011] [Accepted: 01/04/2011] [Indexed: 05/31/2023]
Abstract
This review is the fifth update of the original review, published in 1999, on the application of MALDI mass spectrometry to the analysis of carbohydrates and glycoconjugates and brings coverage of the literature to the end of 2008. The first section of the review covers fundamental studies, fragmentation of carbohydrate ions, use of derivatives and new software developments for analysis of carbohydrate spectra. Among newer areas of method development are glycan arrays, MALDI imaging and the use of ion mobility spectrometry. The second section of the review discusses applications of MALDI MS to the analysis of different types of carbohydrate. Specific compound classes that are covered include carbohydrate polymers from plants, N- and O-linked glycans from glycoproteins, biopharmaceuticals, glycated proteins, glycolipids, glycosides and various other natural products. There is a short section on the use of MALDI mass spectrometry for the study of enzymes involved in glycan processing and a section on the use of MALDI MS to monitor products of the chemical synthesis of carbohydrates with emphasis on carbohydrate-protein complexes and glycodendrimers. Corresponding analyses by electrospray ionization now appear to outnumber those performed by MALDI and the amount of literature makes a comprehensive review on this technique impractical. However, most of the work relating to sample preparation and glycan synthesis is equally relevant to electrospray and, consequently, those proposing analyses by electrospray should also find material in this review of interest.
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Affiliation(s)
- David J Harvey
- Oxford Glycobiology Institute, Department of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
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12
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Gómez-García M, Benito JM, Butera AP, Mellet CO, Fernández JMG, Blanco JLJ. Probing Carbohydrate-Lectin Recognition in Heterogeneous Environments with Monodisperse Cyclodextrin-Based Glycoclusters. J Org Chem 2012; 77:1273-88. [DOI: 10.1021/jo201797b] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Marta Gómez-García
- Departamento
de Química
Orgánica, Facultad de Química, Universidad de Sevilla, Profesor García González 1,
E-41012 Sevilla, Spain
| | - Juan M. Benito
- Instituto de Investigaciones
Químicas, CSIC - Universidad de Sevilla, Américo Vespucio 49, Isla de la Cartuja, E-41092 Sevilla,
Spain
| | - Anna P. Butera
- Departamento
de Química
Orgánica, Facultad de Química, Universidad de Sevilla, Profesor García González 1,
E-41012 Sevilla, Spain
| | - Carmen Ortiz Mellet
- Departamento
de Química
Orgánica, Facultad de Química, Universidad de Sevilla, Profesor García González 1,
E-41012 Sevilla, Spain
| | - José M. García Fernández
- Instituto de Investigaciones
Químicas, CSIC - Universidad de Sevilla, Américo Vespucio 49, Isla de la Cartuja, E-41092 Sevilla,
Spain
| | - José L. Jiménez Blanco
- Departamento
de Química
Orgánica, Facultad de Química, Universidad de Sevilla, Profesor García González 1,
E-41012 Sevilla, Spain
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13
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Bossu I, Berthet N, Dumy P, Renaudet O. Synthesis of Glycocyclopeptides by Click Chemistry and Inhibition Assays with Lectins. J Carbohydr Chem 2011. [DOI: 10.1080/07328303.2011.590260] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Isabelle Bossu
- a Département de Chimie Moléculaire, UMR-CNRS 5250 & ICMG FR 2607 , Université Joseph Fourier , 570 rue de la chimie, BP 53, 38041 , Grenoble Cedex 9 , France
| | - Nathalie Berthet
- a Département de Chimie Moléculaire, UMR-CNRS 5250 & ICMG FR 2607 , Université Joseph Fourier , 570 rue de la chimie, BP 53, 38041 , Grenoble Cedex 9 , France
| | - Pascal Dumy
- a Département de Chimie Moléculaire, UMR-CNRS 5250 & ICMG FR 2607 , Université Joseph Fourier , 570 rue de la chimie, BP 53, 38041 , Grenoble Cedex 9 , France
| | - Olivier Renaudet
- a Département de Chimie Moléculaire, UMR-CNRS 5250 & ICMG FR 2607 , Université Joseph Fourier , 570 rue de la chimie, BP 53, 38041 , Grenoble Cedex 9 , France
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14
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Bossu I, Šulc M, Křenek K, Dufour E, Garcia J, Berthet N, Dumy P, Křen V, Renaudet O. Dendri-RAFTs: a second generation of cyclopeptide-based glycoclusters. Org Biomol Chem 2011; 9:1948-59. [PMID: 21221455 DOI: 10.1039/c0ob00772b] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Synthetic glycoclusters and their related biological applications have stimulated increasing interest over the last decade. As a prerequisite to discovering active and selective therapeuticals, the development of multivalent glycoconjugates with diverse topologies is faced with inherent synthetic and structural characterisation difficulties. Here we describe a new series of molecularly-defined glycoclusters that were synthesized in a controlled manner using a robust and versatile divergent protocol. Starting from a Regioselectively Addressable Functionalized Template (RAFT) carrier, either a polylysine dendritic framework or a second RAFT, then 16 copies of βGal, αMan, βLac or cancer-related Thomsen-Freidenreich (αTF) antigen were successively conjugated within the same molecule using oxime chemistry. We thus obtained a new generation of dendri-RAFTs glycoclusters with high glycosidic density and variable spatial organizations. These compounds displaying 16 endgroups were unambiguously characterized by NMR spectroscopy and mass spectrometry. Further biological assays between a model lectin from Canavalia ensiformis (ConA) and mannosylated glycoclusters revealed a higher inhibition potency than the tetravalent counterpart, in particular for the hexadecavalent polylysine skeleton. Together with the efficiency of the synthetic and characterisation processes, this preliminary biological study provided clear evidence of promising properties that make the second generation of cyclopeptide-based glycoclusters attractive for biomedical applications.
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Affiliation(s)
- Isabelle Bossu
- Département de Chimie Moléculaire, UMR CNRS 5250 and ICMG FR 2607, Université Joseph Fourier, BP53, 38041 Grenoble Cedex 9, France
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15
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Euzen R, Reymond JL. Glycopeptide dendrimers: tuning carbohydrate–lectin interactions with amino acids. ACTA ACUST UNITED AC 2011; 7:411-21. [DOI: 10.1039/c0mb00177e] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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16
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Peptide and glycopeptide dendrimers and analogous dendrimeric structures and their biomedical applications. Amino Acids 2010; 40:301-70. [DOI: 10.1007/s00726-010-0707-z] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2010] [Accepted: 07/15/2010] [Indexed: 02/08/2023]
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17
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Parera Pera N, Branderhorst HM, Kooij R, Maierhofer C, van der Kaaden M, Liskamp RMJ, Wittmann V, Ruijtenbeek R, Pieters RJ. Rapid Screening of Lectins for Multivalency Effects with a Glycodendrimer Microarray. Chembiochem 2010; 11:1896-904. [DOI: 10.1002/cbic.201000340] [Citation(s) in RCA: 64] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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18
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Schierholt A, Hartmann M, Schwekendiek K, Lindhorst TK. Cysteine-Based Mannoside Glycoclusters: Synthetic Routes and Antiadhesive Properties. European J Org Chem 2010. [DOI: 10.1002/ejoc.201000185] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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19
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Rich RL, Myszka DG. Grading the commercial optical biosensor literature-Class of 2008: 'The Mighty Binders'. J Mol Recognit 2010; 23:1-64. [PMID: 20017116 DOI: 10.1002/jmr.1004] [Citation(s) in RCA: 109] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Optical biosensor technology continues to be the method of choice for label-free, real-time interaction analysis. But when it comes to improving the quality of the biosensor literature, education should be fundamental. Of the 1413 articles published in 2008, less than 30% would pass the requirements for high-school chemistry. To teach by example, we spotlight 10 papers that illustrate how to implement the technology properly. Then we grade every paper published in 2008 on a scale from A to F and outline what features make a biosensor article fabulous, middling or abysmal. To help improve the quality of published data, we focus on a few experimental, analysis and presentation mistakes that are alarmingly common. With the literature as a guide, we want to ensure that no user is left behind.
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Affiliation(s)
- Rebecca L Rich
- Center for Biomolecular Interaction Analysis, University of Utah, Salt Lake City, UT 84132, USA
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20
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Gómez-García M, Benito JM, Gutiérrez-Gallego R, Maestre A, Mellet CO, Fernández JMG, Blanco JLJ. Comparative studies on lectin–carbohydrate interactions in low and high density homo- and heteroglycoclusters. Org Biomol Chem 2010; 8:1849-60. [DOI: 10.1039/b920048g] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
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21
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Renaudet O, Boturyn D, Dumy P. Biomolecular assembly by iterative oxime ligations. Bioorg Med Chem Lett 2009; 19:3880-3. [DOI: 10.1016/j.bmcl.2009.03.119] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2009] [Revised: 03/24/2009] [Accepted: 03/25/2009] [Indexed: 10/21/2022]
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22
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Renaudet O, Dumy P. Oxime-Based Synthesis of New Chromogenic and Fluorogenic Oligosaccharides. European J Org Chem 2008. [DOI: 10.1002/ejoc.200800855] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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