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Grishina IV, Makeev DV, Rybakov VB, Lapteva VL, Palyulin VA, Zefirov NS. Synthesis, crystal and molecular structure of 3,7-ditosyl-1,5-diphenyl-3,7-diazabicyclo[3.3.1]nonane. DOKLADY CHEMISTRY 2017. [DOI: 10.1134/s0012500817110015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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3
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Furyl-Substituted Mixed Phosphonium-Iodonium Ylides in the Synthesis of Annelated P-Containing Heterocyclic Compounds. European J Org Chem 2015. [DOI: 10.1002/ejoc.201500876] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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4
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Reyes-Trejo B, Villa-García M, Amparo Borja-De-La-Rosa M, Zuleta-Prada H, A. Toscano R. Structure and Absolute Configuration of the 11-Noriridoid “Chapingolide”. HETEROCYCLES 2015. [DOI: 10.3987/com-15-13216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Shishov DV, Nurieva EV, Zefirov NA, Mamaeva AV, Zefirova ON. Synthesis of 5-hydroxy-4-methoxytricyclo[7.3.1.02,7]trideca-2,4,6-trien- 8-one – precursor of putative bioisosteric colchicine analogues. MENDELEEV COMMUNICATIONS 2014. [DOI: 10.1016/j.mencom.2014.11.021] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Averina EB, Sedenkova KN, Bakhtin SG, Grishin YK, Kutateladze AG, Roznyatovsky VA, Rybakov VB, Butov GM, Kuznetsova TS, Zefirov NS. symm-Tetramethylenecyclooctane: en route to polyspirocycles. J Org Chem 2014; 79:8163-70. [PMID: 25105976 DOI: 10.1021/jo501380y] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A straightforward gram-scale synthesis of 1,3,5,7-tetrakis(methylidene)cyclooctane (TMCO) from commercial adamantane-1,3-dicarboxylic acid has been developed. TMCO exhibits high reactivity toward a number of carbenes and epoxidizing reagents, undergoing multiple cyclopropanations, dihalocyclopropanations, or epoxidations of four double bonds to yield polyspirocyclic products. Stereochemical features of polyspirocyclopropanated compounds have been thoroughly examined in experimental (NMR) and theoretical (DFT) studies. Comprehensive stereochemical assignment of TMCO adducts with dihalocarbenes and spiroepoxy products was achieved. The conditions of the formation of 1-methyl-3,7-bis(methylidene)bicyclo[3.3.1]nonane from the adamantane derivative were optimized, and diadducts of this diene with dihalocarbenes were isolated and characterized.
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Affiliation(s)
- Elena B Averina
- Department of Chemistry, Lomonosov Moscow State University , Leninskie Gory, 1-3, Moscow 119991, Russia
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Plazinski W, Drach M. The dynamics of the conformational changes in the hexopyranose ring: a transition path sampling approach. RSC Adv 2014. [DOI: 10.1039/c4ra03410d] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The transition paths corresponding to the conformational rearrangements in the ring of hexapyranose (α-d- and β-d-glucose) molecules were described by applying the transition path sampling method.
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Affiliation(s)
- Wojciech Plazinski
- Institute of Catalysis and Surface Chemistry
- Polish Academy of Sciences
- 30-239 Cracow, Poland
| | - Mateusz Drach
- Department of Theoretical Chemistry
- Faculty of Chemistry
- UMCS
- 20-031 Lublin, Poland
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Shi YC, Duan HY. Two seven-membered heterocycles with 1,2-diaza ring N atoms: 3,5,7-triphenyl-1,2-diazacyclohepta-1(7),2-diene and 3,7-bis(2-hydroxyphenyl)-5-phenyl-1,2-diazacyclohepta-1(7),2-diene. Acta Crystallogr C 2013; 69:1177-80. [DOI: 10.1107/s0108270113023792] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2013] [Accepted: 08/23/2013] [Indexed: 11/10/2022] Open
Abstract
The title compounds, 3,5,7-triphenyl-1,2-diazacyclohepta-1(7),2-diene, C23H20N2, (I), and 3,7-bis(2-hydroxyphenyl)-5-phenyl-1,2-diazacyclohepta-1(7),2-diene, C23H20N2O2, (II), constitute the first structurally characterized examples of seven-membered heterocycles with 1,2-diaza ring N atoms. Compound (I) crystallizes in the space groupP\overline{1}, with two independent molecules in the asymmetric unit that differ in the conformation of one of the phenyl rings, while (II) crystallizes in the space groupC2/c. The C5N2ring in each of (I) and (II) adopts a twist-boat conformation. Compound (I) exhibits neither C—H...π interactions nor π–π stacking interactions, whereas (II) shows both intramolecular O—H...N hydrogen bonds and a C—H...π interaction that joins the molecules into an infinite chain in the [010] direction.
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Plotnikova ED, Nurieva EV, Peregud DI, Onufriev MV, Gulyaeva NV, Makarchuk VM, Filimonova MV, Zefirov NS, Zefirova ON. Molecular modeling, X-ray diffraction analysis, and the study of iNOS inhibitor activity of 3-imino-2,4-diazabicyclo[3.3.1]nonan-1-ol hydrochloride. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2013. [DOI: 10.1134/s1070428013080022] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Baranova TY, Zefirova ON, Banaru AM, Khrustalev VN, Ivanova AA, Ivanov AA, Zefirov NS. Crystallographic study and molecular modeling on the oxidation product of N-[(8R)-2-methoxy-5,6,7,8,9,10-hexahydro-6,9-methanocyclohepta[b]indol-8-yl]acetamide. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2012. [DOI: 10.1134/s107042801204015x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Zefirova ON, Baranova TY, Lyssenko KA, Zefirov NA, Zyk NV, Vassiliev PM, Yakovlev DS, Spasov AA. Synthesis and biological testing of conformationally restricted serotonin analogues with bridgehead moieties. MENDELEEV COMMUNICATIONS 2012. [DOI: 10.1016/j.mencom.2012.03.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Zefirova ON, Moisseeva NN, Nurieva EV, Trofimova TP, Proshin AN, Slovokhotov YL. Molecular and crystal structures of hetero-analogues of bicyclo[3.3.1]nonane with nitrogen and sulfur atoms. MENDELEEV COMMUNICATIONS 2011. [DOI: 10.1016/j.mencom.2011.09.005] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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Abstract
Computerized molecular modeling continues to increase in capability and applicability to carbohydrates. This chapter covers nomenclature and conformational aspects of carbohydrates, perhaps of greater use to carbohydrate-inexperienced computational chemists. Its comments on various methods and studies might be of more use to computation-inexperienced carbohydrate chemists. New work on intrinsic variability of glucose, an overall theme, is described.
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Matveeva ED, Podrugina TA, Taranova MA, Borisenko AA, Mironov AV, Gleiter R, Zefirov NS. Photochemical Synthesis of Phosphinolines from Phosphonium−Iodonium Ylides. J Org Chem 2010; 76:566-72. [DOI: 10.1021/jo101993a] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Elena D. Matveeva
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
| | - Tatyana A. Podrugina
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
| | - Marina A. Taranova
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
| | - Anatolyi A. Borisenko
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
| | - Andrey V. Mironov
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
| | - Rolf Gleiter
- Organisch-Chemisches Institut der Universitaet Heidelberg, Im Neuenheimer Feld 270, D-69120 Heidelberg, Germany
| | - Nikolay S. Zefirov
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
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Vasin VA, Petrov PS, Genaev M, Gindin VA, Razin VV. On the spatial structure of methyl 6,7-endo, sin-dibrom-7-anti-(phenylsulfonyl) bicyclo[3.1.1]heptane-6-exo-carboxylate. J STRUCT CHEM+ 2010. [DOI: 10.1007/s10947-010-0144-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Vasin VA, Kostryukov SG, Neverov VA, Razin VV. Regio- and stereoselective addition of methane- and bromomethanesulfonyl bromides to 1-phenylthiotricyclo[4.1.0.02,7]heptane. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2010. [DOI: 10.1134/s1070428010050027] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Investigations in the field of benzoxa- zines. 15*. Tandem heterocyclizations with the participion of 2-formylbenzoic acid. The synthesis of isoindolo[1,2-b][1, 3]- and -[2,1-a][1, 3]benzoxazinones. Chem Heterocycl Compd (N Y) 2010. [DOI: 10.1007/s10593-010-0476-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Matveeva ED, Podrugina TA, Pavlova AS, Mironov AV, Borisenko AA, Gleiter R, Zefirov NS. Heterocycles from Phosphonium−Iodonium Ylides. Photochemical Synthesis of λ5-Phosphinolines. J Org Chem 2009; 74:9428-32. [DOI: 10.1021/jo901984q] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Elena D. Matveeva
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
| | - Tatyana A. Podrugina
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
| | - Anna S. Pavlova
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
| | - Andrey V. Mironov
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
| | - Anatoliy A. Borisenko
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
| | - Rolf Gleiter
- Organisch-Chemisches Institut der Universitaet Heidelberg, Im Neuenheimer Feld 270 D-69120, Heidelberg, Germany
| | - Nikolay S. Zefirov
- Department of Chemistry, Moscow State Lomonosov University, Moscow, Lenin Hills, 1, Russian Federation 119992
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Baranova TY, Averina NV, Zyk NV, Zefirov NS, Lyssenko KA, Antipin MY, Zefirova ON. Synthesis of indole derivatives fused with bicyclo[3.2.1]octane framework. MENDELEEV COMMUNICATIONS 2009. [DOI: 10.1016/j.mencom.2009.01.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Structure of methyl-7-methoxy-7-phenyl-6-endo-halobicyclo[3.1.1]heptane-6-exo-carboxylate diastereomers in single crystals. J STRUCT CHEM+ 2007. [DOI: 10.1007/s10947-007-0180-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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21
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Molecular and crystal structure of indole derivatives fused with substituted bicyclo[3.3.1]nonane. Struct Chem 2007. [DOI: 10.1007/s11224-007-9174-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Zefirova ON, Zasurskaya LA, Nurieva EV, Zyk NV, Zefirov NS. Molecular and crystal structure of ethylene acetal of endo-endo-3-trityloxymethylbicyclo[3.3.1]nonane-2-on-7-ol. Struct Chem 2007. [DOI: 10.1007/s11224-007-9168-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Fürstner A, Radkowski K, Peters H, Seidel G, Wirtz C, Mynott R, Lehmann CW. Total Synthesis, Molecular Editing and Evaluation of a Tripyrrolic Natural Product: The Case of “Butylcycloheptylprodigiosin”. Chemistry 2007; 13:1929-45. [PMID: 17225234 DOI: 10.1002/chem.200601639] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Conflicting reports are found in the literature on whether the ortho-pyrrolophane derivative 6, which has been named "butylcycloheptylprodigiosin" even though it is a cyclononane derivative, is a natural product or merely a mis-assigned structure. This dispute has now been resolved by an unambiguous total synthesis of this complex alkaloid which confirms the initial structure assignment. The chosen approach is largely catalysis-based, featuring the first application of a "Narasaka-Heck" reaction in natural product chemistry. This palladium-catalyzed transformation allows the unsaturated oxime ester 26 to be converted into the bicyclic dihydropyrrole 27. Other notable reactions of the reported approach to 6 are a regioselective Tsuji-Trost reaction of the doubly allylic acetate 21 with methyl acetoacetate, a base-induced aromatization of 27 to the corresponding pyrrole 28, a chemoselective oxidation of the benzylic methyl group in 33 with cerium ammonium nitrate in a biphasic reaction medium that does not affect the labile pyrrole nucleus, and a Suzuki cross-coupling for the completion of the heterocyclic domain. Diversification in the latter step leads to a set of analogues that differ from the natural product in the terminal (hetero)arene ring. This structural modification results in complete loss of the very pronounced ability of the parent compound 6 to induce oxidative cleavage in double stranded DNA in the presence of Cu(II). Several cyclononane-, cyclononene- and cyclononadiene derivatives prepared en route to 6 have been characterized by crystal structure analysis, allowing the conformational behavior of nine-membered carbocycles to be studied.
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Affiliation(s)
- Alois Fürstner
- Max-Planck-Institut für Kohlenforschung, 45470 Mülheim/Ruhr, Germany.
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Burgueño-Tapia E, Hernández-Carlos B, Joseph-Nathan P. DFT, solution, and crystal conformation of eremophilanolides. J Mol Struct 2006. [DOI: 10.1016/j.molstruc.2006.04.028] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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26
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Atroshchenko YM, Shakhkel'dyan IE, Borbulevich OY, Shchukin AN, Antipin MY, Khrustalev VN. Formation of Isomeric 3-Azabicyclo[3.3.1]nonanes in a Reaction of 1-(2-Hydroxyethoxy)-2,4-dinitrobenzene with Sodium Borohydride, Formaldehyde, and Methylamine. RUSSIAN JOURNAL OF ORGANIC CHEMISTRY 2005. [DOI: 10.1007/s11178-006-0019-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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27
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Aaron Nieto-Álvarez D, Jiménez-Cruz F, Mancilla T. Synthesis and characterization of new di-n-butyl[bis{dimethyl-2-(3-oxo-5-phenyl(4-subtituted)penten-5-ato)malonates}]tin(IV): The crystal structure of di-n-butyl[bis{dimethyl-2-[5-(4-nitrophenyl)-3-oxo-penten-5-ato]malonate}]tin(IV). Polyhedron 2005. [DOI: 10.1016/j.poly.2005.02.024] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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28
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Sheremetev AB, Aleksandrova NS, Dmitriev DE, Averkiev BB, Antipin MY. Synthesis and x-ray study of novel azofurazan-annulated macrocyclic lactams. J Heterocycl Chem 2005. [DOI: 10.1002/jhet.5570420408] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Ramírez-Quirós Y, Balderas M, Escalante J, Quintana D, Gallardo I, Madrigal D, Molins E, Juaristi E. X-ray Crystallographic Study of Substituted Perhydropyrimidinones. Extreme Changes in Ring Conformation. J Org Chem 1999. [DOI: 10.1021/jo991297q] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Yara Ramírez-Quirós
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Apartado Postal 14-740, 07000 México, DF, Mexico, and Institut de Ciència de Materials de Barcelona (CSIC), Campus Universitat Autònoma de Barcelona, 08193 Cerdanyola, Spain
| | - Margarita Balderas
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Apartado Postal 14-740, 07000 México, DF, Mexico, and Institut de Ciència de Materials de Barcelona (CSIC), Campus Universitat Autònoma de Barcelona, 08193 Cerdanyola, Spain
| | - Jaime Escalante
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Apartado Postal 14-740, 07000 México, DF, Mexico, and Institut de Ciència de Materials de Barcelona (CSIC), Campus Universitat Autònoma de Barcelona, 08193 Cerdanyola, Spain
| | - Delia Quintana
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Apartado Postal 14-740, 07000 México, DF, Mexico, and Institut de Ciència de Materials de Barcelona (CSIC), Campus Universitat Autònoma de Barcelona, 08193 Cerdanyola, Spain
| | - Itzell Gallardo
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Apartado Postal 14-740, 07000 México, DF, Mexico, and Institut de Ciència de Materials de Barcelona (CSIC), Campus Universitat Autònoma de Barcelona, 08193 Cerdanyola, Spain
| | - Domingo Madrigal
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Apartado Postal 14-740, 07000 México, DF, Mexico, and Institut de Ciència de Materials de Barcelona (CSIC), Campus Universitat Autònoma de Barcelona, 08193 Cerdanyola, Spain
| | - Elies Molins
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Apartado Postal 14-740, 07000 México, DF, Mexico, and Institut de Ciència de Materials de Barcelona (CSIC), Campus Universitat Autònoma de Barcelona, 08193 Cerdanyola, Spain
| | - Eusebio Juaristi
- Departamento de Química, Centro de Investigación y de Estudios Avanzados del Instituto Politécnico Nacional, Apartado Postal 14-740, 07000 México, DF, Mexico, and Institut de Ciència de Materials de Barcelona (CSIC), Campus Universitat Autònoma de Barcelona, 08193 Cerdanyola, Spain
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