1
|
Vandaele E, Mališ M, Luber S. The Role of Aqueous Solvation on the Intersystem Crossing of Nitrophenols. J Chem Theory Comput 2024; 20:3258-3272. [PMID: 38606908 PMCID: PMC11044273 DOI: 10.1021/acs.jctc.3c01400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2023] [Revised: 03/27/2024] [Accepted: 03/29/2024] [Indexed: 04/13/2024]
Abstract
The photochemistry of nitrophenols is a source of smog as nitrous acid is formed from their photolysis. Nevertheless, computational studies of the photochemistry of these widespread toxic molecules are scarce. In this work, the initial photodeactivation of ortho-nitrophenol and para-nitrophenol is modeled, both in gas phase and in aqueous solution to simulate atmospheric and aerosol environments. A large number of excited states, six for ortho-nitrophenol and 11 for para-nitrophenol, have been included and were all populated during the decay. Moreover, periodic time-dependent density functional theory (TDDFT) is used for both the explicitly included solvent and the solute. A comparison to periodic QM/MM (TDDFT/MM), with electrostatic embedding, is made, showing notable differences between the decays of solvated nitrophenols simulated with QM/MM and full (TD)DFT. A reduced intersystem crossing in aqueous solution could be observed thanks to the surface hopping approach using explicit, periodic TDDFT solvation including spin-orbit couplings.
Collapse
Affiliation(s)
- Eva Vandaele
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057 Zürich, Switzerland
| | - Momir Mališ
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057 Zürich, Switzerland
| | - Sandra Luber
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057 Zürich, Switzerland
| |
Collapse
|
2
|
Khan A, Vazquez PAM, Fernandes RMT. Assessment of the proposed pseudo-potential theoretical model for the static and dynamic Raman scattering intensities: Multivariate statistical approach to quantum-chemistry protocols. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 245:118891. [PMID: 32919150 DOI: 10.1016/j.saa.2020.118891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 08/18/2020] [Accepted: 08/25/2020] [Indexed: 06/11/2023]
Abstract
Accurate calculation of molecular polarizabilities and Raman intensities required high-level correlated wave functions (CCSD) and large basis set with the inclusion of electronic correlation within experimental precision. These requirements, in terms of time and computation, are economically costly. Polarized Gaussian basis sets adapted to effective core potentials (ECPs) for the static and frequency dependent Raman intensities is presented. The results of the proposed basis sets at CCSD and DFT levels in comparison with Sadlej-pVTZ, as reference basis set, show quite a good quantitative agreement in the properties with a valuable reduction in the computational time and resources. Multivariate principal component analysis (PCA) was performed to study the assessment of the efficiency of proposed methodology and diagnose the inherent information related to the kind of normal vibrational mode of each molecule, based on the variations in the computed Raman intensities. The results, in the form of score-plots, explored a clear segregation and classification among the Raman intensities data, revealing its dependence on the excitation frequencies of laser and nature of the vibrational mode of each molecule of interest. Moreover, the projection of the loadings-plots of the PCs successfully enabled to classify the most correlated computational methods in to the same groups, and made isolations of the less efficient basis functions at the corresponding theoretical method.
Collapse
Affiliation(s)
- Alamgir Khan
- Departamento de Química, Centro de Educação, Ciências Exatas e Naturais - CECEN, Universidade Estadual do Maranhão - UEMA, Cidade Universitária Paulo VI, Campus São Luís/MA, CEP 65000-00, Brazil.
| | - Pedro Antônio Muniz Vazquez
- Departamento de Físico-Química, Instituto de Química, Universidade Estadual de Campinas - UNICAMP, Caixa Postal 6154, Campinas, SP, 13083-970, Brazil.
| | - Raquel Maria Trindade Fernandes
- Departamento de Química, Centro de Educação, Ciências Exatas e Naturais - CECEN, Universidade Estadual do Maranhão - UEMA, Cidade Universitária Paulo VI, Campus São Luís/MA, CEP 65000-00, Brazil.
| |
Collapse
|
3
|
Nitta Y, Schalk O, Igarashi H, Wada S, Tsutsumi T, Saita K, Taketsugu T, Sekikawa T. Real-Time Probing of an Atmospheric Photochemical Reaction by Ultrashort Extreme Ultraviolet Pulses: Nitrous Acid Release from o-Nitrophenol. J Phys Chem Lett 2021; 12:674-679. [PMID: 33393788 DOI: 10.1021/acs.jpclett.0c03297] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Photolysis of o-nitrophenol, contained in brown carbon, is considered to be a major process for the generation of nitrous acid (HONO) in the atmosphere. In this Letter, we used time-resolved photoelectron spectroscopy with 29.5 eV probe pulses and ab initio calculations to disentangle all reaction steps from the excitation to the dissociation of HONO. After excitation, intersystem crossing to the triplet manifold follows ultrafast excited-state intramolecular hydrogen transfer, where the molecules deplanarizes and finally splits off HONO after 0.5-1 ps.
Collapse
Affiliation(s)
- Yuki Nitta
- Department of Applied Physics, Hokkaido University, Kita 13 Nishi 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan
| | - Oliver Schalk
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
| | - Hironori Igarashi
- Department of Applied Physics, Hokkaido University, Kita 13 Nishi 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan
| | - Satoi Wada
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
| | - Takuro Tsutsumi
- Graduate School of Chemical Sciences and Engineering, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
| | - Kenichiro Saita
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
| | - Tetsuya Taketsugu
- Department of Chemistry, Faculty of Science, Hokkaido University, Kita 10 Nishi 8, Kita-ku, Sapporo, Hokkaido 060-0810, Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Kita-ku, Sapporo, Hokkaido 001-0021, Japan
| | - Taro Sekikawa
- Department of Applied Physics, Hokkaido University, Kita 13 Nishi 8, Kita-ku, Sapporo, Hokkaido 060-8628, Japan
| |
Collapse
|
4
|
Intermolecular interaction between anthraquinone dyes and TEMPO mediator in dye-sensitized photocatalytic systems. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY 2020. [DOI: 10.1016/j.jpap.2020.100003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022] Open
|
5
|
Mondal S, Narayana C. Role of Explicit Solvation in the Simulation of Resonance Raman Spectra within Short-Time Dynamics Approximation. J Phys Chem B 2019; 123:8800-8813. [PMID: 31408344 DOI: 10.1021/acs.jpcb.9b07471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In short-time dynamics approximation, relative resonance Raman (RR) intensity of a vibrational mode primarily depends on the magnitude of square of the excited-state gradient along the corresponding normal coordinate, ground-state normal mode eigenvector, and harmonic vibrational wavenumbers. In this study, through simulation of RR spectra of guanosine-5'-monophosphate (GMP) in two ππ* singlet excited states, we analyze how the explicitly hydrogen-bonded local solvation structure of the chromophore dictates intensities of the RR active modes in an unprecedented manner. We show that the accuracy of the structural model of solvated chromophore plays a decisive role in determining an optimal theoretical method for prediction of the Franck-Condon region of the ππ* excited states. 9-Methylguanine (9-meG) in complex with six water molecules (9-meG·6H2O) is found out to be the most accurate one for describing GMP in two different bright electronic states. We find that explicit hydrogen-bonded water molecules strongly influence computed RR intensities of GMP by modulating both the ground-state normal mode vectors and the excited-state energy gradients. We find that simultaneous inclusion of six explicit waters to describe the solute-solvent interaction near all hydration sites is essential for reliable prediction of the features of RR spectra in Lb and Bb electronic states of GMP.
Collapse
|
6
|
Brehm M, Thomas M. Computing Bulk Phase Resonance Raman Spectra from ab Initio Molecular Dynamics and Real-Time TDDFT. J Chem Theory Comput 2019; 15:3901-3905. [PMID: 31246025 DOI: 10.1021/acs.jctc.9b00512] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We present our novel approach for computing resonance Raman (RR) spectra of periodic bulk phase systems from ab initio molecular dynamics, including solvent influence and some anharmonic effects. Based on real-time time-dependent density functional theory, we obtain the RR spectra for all laser wavelengths in one pass. We compute the RR spectrum of uracil in aqueous solution, which is in good agreement with experiment. This is the first simulation of a bulk phase RR spectrum.
Collapse
Affiliation(s)
- Martin Brehm
- Institut für Chemie - Theoretische Chemie , Martin-Luther-Universität Halle-Wittenberg , Von-Danckelmann-Platz 4 , 06120 Halle (Saale) , Germany
| | - Martin Thomas
- Institut für Chemie - Theoretische Chemie , Martin-Luther-Universität Halle-Wittenberg , Von-Danckelmann-Platz 4 , 06120 Halle (Saale) , Germany
| |
Collapse
|
7
|
Kar RK, Borin VA, Ding Y, Matysik J, Schapiro I. Spectroscopic Properties of Lumiflavin: A Quantum Chemical Study. Photochem Photobiol 2018; 95:662-674. [DOI: 10.1111/php.13023] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Accepted: 09/05/2018] [Indexed: 12/24/2022]
Affiliation(s)
- Rajiv Kumar Kar
- Fritz Haber Center for Molecular Dynamics Research Institute of Chemistry Hebrew University of Jerusalem Jerusalem Israel
| | - Veniamin A. Borin
- Fritz Haber Center for Molecular Dynamics Research Institute of Chemistry Hebrew University of Jerusalem Jerusalem Israel
| | - Yonghong Ding
- Institute of Analytical Chemistry University of Leipzig Leipzig Germany
| | - Jörg Matysik
- Institute of Analytical Chemistry University of Leipzig Leipzig Germany
| | - Igor Schapiro
- Fritz Haber Center for Molecular Dynamics Research Institute of Chemistry Hebrew University of Jerusalem Jerusalem Israel
| |
Collapse
|
8
|
Mattiat J, Luber S. Efficient calculation of (resonance) Raman spectra and excitation profiles with real-time propagation. J Chem Phys 2018; 149:174108. [DOI: 10.1063/1.5051250] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Johann Mattiat
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, Zurich, Switzerland
| | - Sandra Luber
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, Zurich, Switzerland
| |
Collapse
|
9
|
Yang J, Li AY. Hydrogen bond strengthening between o-nitroaniline and formaldehyde in electronic excited states: A theoretical study. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 199:194-201. [PMID: 29605783 DOI: 10.1016/j.saa.2018.03.062] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Revised: 03/16/2018] [Accepted: 03/23/2018] [Indexed: 06/08/2023]
Abstract
To study the hydrogen bonds upon photoexcited, the time dependent density function method (TD DFT) was performed to investigate the excited state hydrogen bond properties of between o-nitroaniline (ONA) and formaldehyde (CH2O). The optimized structures of the complex and the monomers both in the ground state and the electronically excited states are calculated using DFT and TD DFT method respectively. Quantum chemical calculations of the electronic and vibrational absorption spectra are also carried out by TD DFT method at the different level. The complex ONA⋯CH2O forms the intramolecular hydrogen bond and intermolecular hydrogen bonds. Since the strength of hydrogen bonds can be measured by studying the vibrational absorption spectra of the characteristic groups on the hydrogen bonding acceptor and donor, it evidently confirms that the hydrogen bonds is strengthened in the S1/S2/T1 excited states upon photoexcitation. As a result, the hydrogen bonds cause that the CH stretch frequency of the proton donor CH2O has a blue shift, and the electron excitations leads to a frequency red shift of NO and NH stretch modes in the o-nitroaniline(ONA) and a small frequency blue shift of CH stretch mode in the formaldehyde(CH2O) in the S1 and S2 excited states. The excited states S1, S2 and T1 are locally excited states where only the ONA moiety is excited, but the CH2O moiety remains in its ground state.
Collapse
Affiliation(s)
- Juan Yang
- School of Chemistry and Chemical Engineering, Southwest University, Tiansheng Road No. 1, Chongqing 400715, People's Republic of China
| | - An Yong Li
- School of Chemistry and Chemical Engineering, Southwest University, Tiansheng Road No. 1, Chongqing 400715, People's Republic of China.
| |
Collapse
|
10
|
Guthmuller J. The role of Herzberg-Teller effects on the resonance Raman spectrum of trans-porphycene investigated by time dependent density functional theory. J Chem Phys 2018; 148:124107. [PMID: 29604833 DOI: 10.1063/1.5023653] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The S1 excited state properties as well as the associated absorption and resonance Raman (RR) spectra of trans-porphycene are investigated by means of time dependent density functional theory calculations. The relative magnitude of the Franck-Condon (FC) contribution and of the Herzberg-Teller (HT) effects is evaluated for both the absorption and RR intensities. The accuracy of the calculated spectra is assessed by employing different theoretical approximations and by comparing with experimental data. The obtained results show that Duschinsky effects lead to noticeable modifications in the absorption intensities but are nearly negligible in the RR spectrum. By contrast, the HT effects are stronger for the RR intensities compared to the absorption intensities, and these effects significantly improve the agreement with the experimental RR spectrum. Moreover, the HT effects produce different values of the RR depolarization ratios, which can be used to quantify the relative importance of the FC and HT contributions. Generally, it is found that the HT effects have a significant role on the RR spectrum of trans-porphycene and that their inclusion in the computational scheme is mandatory to accurately predict the RR intensities.
Collapse
Affiliation(s)
- Julien Guthmuller
- Faculty of Applied Physics and Mathematics, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
| |
Collapse
|
11
|
Mondal S, Puranik M. Sub-50 fs excited state dynamics of 6-chloroguanine upon deep ultraviolet excitation. Phys Chem Chem Phys 2017; 18:13874-87. [PMID: 27146198 DOI: 10.1039/c6cp01746k] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
The photophysical properties of natural nucleobases and their respective nucleotides are ascribed to the sub-picosecond lifetime of their first singlet states in the UV-B region (260-350 nm). Electronic transitions of the ππ* type, which are stronger than those in the UV-B region, lie at the red edge of the UV-C range (100-260 nm) in all isolated nucleobases. The lowest energetic excited states in the UV-B region of nucleobases have been investigated using a plethora of experimental and theoretical methods in gas and solution phases. The sub-picosecond lifetime of these molecules is not a general attribute of all nucleobases but specific to the five primary nucleobases and a few xanthine and methylated derivatives. To determine the overall UV photostability, we aim to understand the effect of more energetic photons lying in the UV-C region on nucleobases. To determine the UV-C initiated photophysics of a nucleobase system, we chose a halogen substituted purine, 6-chloroguanine (6-ClG), that we had investigated previously using resonance Raman spectroscopy. We have performed quantitative measurements of the resonance Raman cross-section across the Bb absorption band (210-230 nm) and constructed the Raman excitation profiles. We modeled the excitation profiles using Lee and Heller's time-dependent theory of resonance Raman intensities to extract the initial excited state dynamics of 6-ClG within 30-50 fs after photoexcitation. We found that imidazole and pyrimidine rings of 6-ClG undergo expansion and contraction, respectively, following photoexcitation to the Bb state. The amount of distortions of the excited state structure from that of the ground state structure is reflected by the total internal reorganization energy that is determined at 112 cm(-1). The contribution of the inertial component of the solvent response towards the total reorganization energy was obtained at 1220 cm(-1). In addition, our simulation also yields an instantaneous response of the first solvation shell within an ultrafast timescale of less than 30 fs following photoexcitation.
Collapse
Affiliation(s)
- Sayan Mondal
- Indian Institute of Science Education and Research, Dr. Homi Bhabha Road, Pashan, Pune 411008, India.
| | - Mrinalini Puranik
- Indian Institute of Science Education and Research, Dr. Homi Bhabha Road, Pashan, Pune 411008, India.
| |
Collapse
|
12
|
Staniszewska M, Kupfer S, Łabuda M, Guthmuller J. Theoretical Assessment of Excited State Gradients and Resonance Raman Intensities for the Azobenzene Molecule. J Chem Theory Comput 2017; 13:1263-1274. [PMID: 28118003 DOI: 10.1021/acs.jctc.6b00966] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The ground state geometries and vibrational frequencies as well as the excitation energies and excited state gradients of the S1(nπ*) and S2(ππ*) states of trans- and cis-azobenzene are investigated by several DFT methods, namely B3LYP, PBE, M06-2X, CAM-B3LYP, and ωB97X. Excited state properties and in particular gradients are also assessed using the wave function based methods EOM-CCSD and RASPT2/RASSCF. Comparison with experimental data shows that the B3LYP functional gives the most accurate results for the ground state geometry and vibrational frequencies. The analysis of the vertical excitation energies reveals that the RASPT2 approach provides the most accurate excitation energies with deviations of the order of 0.1 eV. Among the TDDFT methods, the CAM-B3LYP functional shows the best performance on the excitation energies. By assessing the excited state gradients with respect to the reference RASPT2 data, the most accurate gradients are obtained with B3LYP, whereas other functionals as well as the EOM-CCSD and RASSCF calculations give less consistent results. Overall, despite the tendency of B3LYP to underestimate the excitation energies, this functional provides the most balanced description of both ground and excited state properties for both isomers of azobenzene in the Franck-Condon region.
Collapse
Affiliation(s)
- Magdalena Staniszewska
- Faculty of Applied Physics and Mathematics, Gdańsk University of Technology , Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Stephan Kupfer
- Institute of Physical Chemistry, Friedrich Schiller University Jena , Helmholtzweg 4, 07-743 Jena, Germany
| | - Marta Łabuda
- Faculty of Applied Physics and Mathematics, Gdańsk University of Technology , Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Julien Guthmuller
- Faculty of Applied Physics and Mathematics, Gdańsk University of Technology , Narutowicza 11/12, 80-233 Gdańsk, Poland
| |
Collapse
|
13
|
Mondal S, Puranik M. Ultrafast structural dynamics of photoexcited adenine. Phys Chem Chem Phys 2017; 19:20224-20240. [DOI: 10.1039/c7cp03092d] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Ultraviolet Resonance Raman (UVRR) spectroscopy derives distinct electronic properties of adenine in the La (260 nm) and Bb (210 nm) excited states.
Collapse
Affiliation(s)
- Sayan Mondal
- Indian Institute of Science Education and Research
- Pune – 411008
- India
| | - Mrinalini Puranik
- Indian Institute of Science Education and Research
- Pune – 411008
- India
| |
Collapse
|
14
|
Chase HM, Rudshteyn B, Psciuk BT, Upshur MA, Strick BF, Thomson RJ, Batista VS, Geiger FM. Assessment of DFT for Computing Sum Frequency Generation Spectra of an Epoxydiol and a Deuterated Isotopologue at Fused Silica/Vapor Interfaces. J Phys Chem B 2015; 120:1919-27. [DOI: 10.1021/acs.jpcb.5b09769] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Hilary M. Chase
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Benjamin Rudshteyn
- Department
of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Brian T. Psciuk
- Department
of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Mary Alice Upshur
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Benjamin F. Strick
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Regan J. Thomson
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Victor S. Batista
- Department
of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Franz M. Geiger
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| |
Collapse
|
15
|
Choosing an atomic basis set for TD-DFT, SOPPA, ADC(2), CIS(D), CC2 and EOM-CCSD calculations of low-lying excited states of organic dyes. Theor Chem Acc 2015. [DOI: 10.1007/s00214-015-1676-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
16
|
Latorre F, Guthmuller J, Marquetand P. A spectroscopic study of the cis/trans-isomers of penta-2,4-dienoic acid attached to gold nanoclusters. Phys Chem Chem Phys 2015; 17:7648-58. [DOI: 10.1039/c4cp05280c] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We simulate how one can spectroscopically discriminate between cis/trans isomers of a molecular switch attached to gold nanoclusters.
Collapse
Affiliation(s)
- Federico Latorre
- Institute of Physical Chemistry
- University of Jena
- 07743 Jena
- Germany
- Institute of Theoretical Chemistry
| | - Julien Guthmuller
- Faculty of Applied Physics and Mathematics
- Gdansk University of Technology
- 80233 Gdansk
- Poland
| | - Philipp Marquetand
- Institute of Theoretical Chemistry
- University of Vienna
- 1090 Vienna
- Austria
| |
Collapse
|
17
|
Romanova J, Liégeois V, Champagne B. Resonant Raman spectra of molecules with diradical character: multiconfigurational wavefunction investigation of neutral viologens. Phys Chem Chem Phys 2014; 16:21721-31. [DOI: 10.1039/c4cp02977a] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In search for a relationship between the diradical character and resonance Raman signatures of neutral viologens by multiconfigurational methods.
Collapse
Affiliation(s)
- Julia Romanova
- Laboratoire de Chimie Théorique
- Unité de Chimie Physique Théorique et Structurale (UCPTS)
- University of Namur
- 5000 Namur, Belgium
| | - Vincent Liégeois
- Laboratoire de Chimie Théorique
- Unité de Chimie Physique Théorique et Structurale (UCPTS)
- University of Namur
- 5000 Namur, Belgium
| | - Benoît Champagne
- Laboratoire de Chimie Théorique
- Unité de Chimie Physique Théorique et Structurale (UCPTS)
- University of Namur
- 5000 Namur, Belgium
| |
Collapse
|
18
|
Egidi F, Bloino J, Cappelli C, Barone V. A robust and effective time-independent route to the calculation of Resonance Raman spectra of large molecules in condensed phases with the inclusion of Duschinsky, Herzberg-Teller, anharmonic, and environmental effects. J Chem Theory Comput 2013; 10:346-363. [PMID: 26550003 DOI: 10.1021/ct400932e] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
We present an effective time-independent implementation to model vibrational resonance Raman (RR) spectra of medium-large molecular systems with the inclusion of Franck-Condon (FC) and Herzberg-Teller (HT) effects and a full account of the possible differences between the harmonic potential energy surfaces of the ground and resonant electronic states. Thanks to a number of algorithmic improvements and very effective parallelization, the full computations of fundamentals, overtones, and combination bands can be routinely performed for large systems possibly involving more than two electronic states. In order to improve the accuracy of the results, an effective inclusion of the leading anharmonic effects is also possible, together with environmental contributions under different solvation regimes. Reduced-dimensionality approaches can further enlarge the range of applications of this new tool. Applications to imidazole, pyrene, and chlorophyll a1 in solution are reported, as well as comparisons with available experimental data.
Collapse
Affiliation(s)
- Franco Egidi
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
| | - Julien Bloino
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy ; Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organometallici, UOS di Pisa, Via G. Moruzzi 1, 56124 Pisa, Italy
| | - Chiara Cappelli
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, via Risorgimento 35, 56126 Pisa, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
| |
Collapse
|
19
|
Guido CA, Knecht S, Kongsted J, Mennucci B. Benchmarking Time-Dependent Density Functional Theory for Excited State Geometries of Organic Molecules in Gas-Phase and in Solution. J Chem Theory Comput 2013; 9:2209-20. [PMID: 26583715 DOI: 10.1021/ct400021c] [Citation(s) in RCA: 96] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We analyze potentials and limits of the Time-Dependent Density Functional Theory (TD-DFT) approach for the determination of excited-state geometries of organic molecules in gas-phase and in solution. Three very popular DFT exchange-correlation functionals, two hybrids (B3LYP and PBE0) and one long-range corrected (CAM-B3LYP), are here investigated, and the results are compared to the correlated RI-CC2 wave function approach. Solvent effects are further analyzed by means of a polarizable continuum model. A total of 15 organic chromophores (including both small molecules and larger push-pull systems) are considered as prototypes of n → π* and π → π* singlet excitations. Our analysis allows to point out specific correlations between the accuracy of the various functionals and the type of excitation and/or the type of chemical bonds involved. We find that while the best ground-state geometries are obtained with PBE0 and B3LYP, CAM-B3LYP yields the most accurate description of electronic and geometrical characteristics of excited states, both in gas-phase and in solution.
Collapse
Affiliation(s)
- Ciro A Guido
- Laboratoire Structures, Propriétés et Modélisation des Solides (SPMS), CNRS UMR 8580, École Centrale Paris , Grande Voie des Vignes, F-92295 Châtenay-Malabry, France
| | - Stefan Knecht
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark , Campusvej 55, 5230 Odense M, Denmark
| | - Jacob Kongsted
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark , Campusvej 55, 5230 Odense M, Denmark
| | - Benedetta Mennucci
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa , via Risorgimento 35, I-56126 Pisa, Italy
| |
Collapse
|
20
|
Thomas M, Latorre F, Marquetand P. Resonance Raman spectra of ortho-nitrophenol calculated by real-time time-dependent density functional theory. J Chem Phys 2013; 138:044101. [DOI: 10.1063/1.4776218] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
21
|
Wächtler M, Bräutigam M, Popp J, Dietzek B. Mechanism of protonation induced changes in Raman spectra of a trisheteroleptic ruthenium complex revealed by DFT calculations. RSC Adv 2013. [DOI: 10.1039/c3ra00157a] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
|
22
|
Kupfer S, Guthmuller J, González L. An Assessment of RASSCF and TDDFT Energies and Gradients on an Organic Donor–Acceptor Dye Assisted by Resonance Raman Spectroscopy. J Chem Theory Comput 2012; 9:543-54. [DOI: 10.1021/ct3009057] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Stephan Kupfer
- Institute for Physical Chemistry,
Friedrich-Schiller University
Jena, Helmholtzweg 4, 07743 Jena, Germany
| | - Julien Guthmuller
- Faculty of Applied Physics and
Mathematics, Gdansk University of Technology, Narutowicza 11/12, 80233
Gdansk, Poland
| | - Leticia González
- Institute
of Theoretical Chemistry,
University of Vienna, Währinger Str. 17, 1090 Vienna, Austria
| |
Collapse
|
23
|
Al-Saidi WA, Asher SA, Norman P. Resonance Raman Spectra of TNT and RDX Using Vibronic Theory, Excited-State Gradient, and Complex Polarizability Approximations. J Phys Chem A 2012; 116:7862-72. [DOI: 10.1021/jp303920c] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- W. A. Al-Saidi
- Department of Chemical and Petroleum
Engineering, University of Pittsburgh,
Pittsburgh, Pennsylvania 15261, United States
| | - Sanford A. Asher
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania
15260, United States
| | - Patrick Norman
- Department
of Physics, Chemistry
and Biology, Linköping University, SE-581 83 Linköping, Sweden
| |
Collapse
|
24
|
Cecchet F, Lis D, Caudano Y, Mani AA, Peremans A, Champagne B, Guthmuller J. Density functional theory-based simulations of sum frequency generation spectra involving methyl stretching vibrations: effect of the molecular model on the deduced molecular orientation and comparison with an analytical approach. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2012; 24:124110. [PMID: 22394554 DOI: 10.1088/0953-8984/24/12/124110] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
The knowledge of the first hyperpolarizability tensor elements of molecular groups is crucial for a quantitative interpretation of the sum frequency generation (SFG) activity of thin organic films at interfaces. Here, the SFG response of the terminal methyl group of a dodecanethiol (DDT) monolayer has been interpreted on the basis of calculations performed at the density functional theory (DFT) level of approximation. In particular, DFT calculations have been carried out on three classes of models for the aliphatic chains. The first class of models consists of aliphatic chains, containing from 3 to 12 carbon atoms, in which only one methyl group can freely vibrate, while the rest of the chain is frozen by a strong overweight of its C and H atoms. This enables us to localize the probed vibrational modes on the methyl group. In the second class, only one methyl group is frozen, while the entire remaining chain is allowed to vibrate. This enables us to analyse the influence of the aliphatic chain on the methyl stretching vibrations. Finally, the dodecanethiol (DDT) molecule is considered, for which the effects of two dielectrics, i.e. n-hexane and n-dodecane, are investigated. Moreover, DDT calculations are also carried out by using different exchange-correlation (XC) functionals in order to assess the DFT approximations. Using the DFT IR vectors and Raman tensors, the SFG spectrum of DDT has been simulated and the orientation of the methyl group has then been deduced and compared with that obtained using an analytical approach based on a bond additivity model. This analysis shows that when using DFT molecular properties, the predicted orientation of the terminal methyl group tends to converge as a function of the alkyl chain length and that the effects of the chain as well as of the dielectric environment are small. Instead, a more significant difference is observed when comparing the DFT-based results with those obtained from the analytical approach, thus indicating the importance of a quantum chemical description of the hyperpolarizability tensor elements of the methyl group.
Collapse
Affiliation(s)
- F Cecchet
- Research Centre in Physics of Matter and Radiation (PMR), FUNDP-University of Namur, 61 rue de Bruxelles, B-5000 Namur, Belgium.
| | | | | | | | | | | | | |
Collapse
|
25
|
Kupfer S, Guthmuller J, Wächtler M, Losse S, Rau S, Dietzek B, Popp J, González L. Protonation effects on the resonance Raman properties of a novel (terpyridine)Ru(4H-imidazole) complex: an experimental and theoretical case study. Phys Chem Chem Phys 2011; 13:15580-8. [DOI: 10.1039/c1cp21521c] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|