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Electronic Circular Dichroism‐Circularly Polarized Raman (eCP‐Raman): A New Form of Chiral Raman Spectroscopy. Chemistry 2022; 28:e202104302. [DOI: 10.1002/chem.202104302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Indexed: 11/07/2022]
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2
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Zając G, Bouř P. Measurement and Theory of Resonance Raman Optical Activity for Gases, Liquids, and Aggregates. What It Tells about Molecules. J Phys Chem B 2021; 126:355-367. [PMID: 34792364 DOI: 10.1021/acs.jpcb.1c08370] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Resonance Raman Optical Activity (RROA) appeared as a natural extension of the nonresonance branch. It combines the structural sensitivity of chiroptical spectroscopy with the signal enhancement coming from the resonance of molecular electronic transitions with the excitation laser light. However, the idea has been hampered by many technical and theoretical problems that are being clarified only in recent years. We provide the theoretical basis and several examples documenting the problems, achievements, and potential of RROA, in particular in biomolecular studies.
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Affiliation(s)
- Grzegorz Zając
- Jagiellonian Centre for Experimental Therapeutics (JCET), Jagiellonian University, Bobrzynskiego 14, Krakow 30-348, Poland
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, Prague, 16610, Czech Republic
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3
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Das M, Gangopadhyay D, Šebestík J, Habartová L, Michal P, Kapitán J, Bouř P. Chiral detection by induced surface-enhanced Raman optical activity. Chem Commun (Camb) 2021; 57:6388-6391. [PMID: 34085068 DOI: 10.1039/d1cc01504d] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Combination of optical activity with surface-enhanced Raman scattering has been a dream of physical chemists for a long time. We report a measurement protocol based on silver colloids and aromatic linkers where chiral acids could be detected in concentrations of about 10-5 M. We explain the mechanism by binding and self-assembly of the linkers into chiral aggregates on the silver surface. Following the "sergeants-and-soldiers" principle, the chirality is determined by the relatively minor acidic component. Such detection of biologically relevant molecules may be useful when other methods, such as electronic circular dichroism, are not sensitive enough. In the future, variations of the chemical structure of the linker or other conditions are needed to provide a more specific signal allowing one to better discriminate among the optically active molecules.
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Affiliation(s)
- Moumita Das
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, Prague 16610, Czech Republic. and Department of Analytical Chemistry, University of Chemistry and Technology, Technická 5, Prague 16628, Czech Republic
| | - Debraj Gangopadhyay
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, Prague 16610, Czech Republic.
| | - Jaroslav Šebestík
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, Prague 16610, Czech Republic.
| | - Lucie Habartová
- Department of Analytical Chemistry, University of Chemistry and Technology, Technická 5, Prague 16628, Czech Republic
| | - Pavel Michal
- Department of Optics, Palacký University Olomouc, 17. listopadu 12, Olomouc, 77146, Czech Republic
| | - Josef Kapitán
- Department of Optics, Palacký University Olomouc, 17. listopadu 12, Olomouc, 77146, Czech Republic
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences, Flemingovo náměstí 2, Prague 16610, Czech Republic. and Department of Analytical Chemistry, University of Chemistry and Technology, Technická 5, Prague 16628, Czech Republic
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4
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Monitoring peptide tyrosine nitration by spectroscopic methods. Amino Acids 2020; 53:517-532. [PMID: 33205301 DOI: 10.1007/s00726-020-02911-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Accepted: 11/04/2020] [Indexed: 12/16/2022]
Abstract
Oxidative stress can lead to various derivatives of the tyrosine residue in peptides and proteins. A typical product is 3-nitro-L-tyrosine residue (Nit), which can affect protein behavior during neurodegenerative processes, such as those associated with Alzheimer's and Parkinson's diseases. Surface enhanced Raman spectroscopy (SERS) is a technique with potential for detecting peptides and their metabolic products at very low concentrations. To explore the applicability to Nit, we use SERS to monitor tyrosine nitration in Met-Enkephalin, rev-Prion protein, and α-synuclein models. Useful nitration indicators were the intensity ratio of two tyrosine marker bands at 825 and 870 cm-1 and a bending vibration of the nitro group. During the SERS measurement, a conversion of nitrotyrosine to azobenzene containing peptides was observed. The interpretation of the spectra has been based on density functional theory (DFT) simulations. The CAM-B3LYP and ωB97XD functionals were found to be most suitable for modeling the measured data. The secondary structure of the α-synuclein models was monitored by electronic and vibrational circular dichroism (ECD and VCD) spectroscopies and modeled by molecular dynamics (MD) simulations. The results suggest that the nitration in these peptides has a limited effect on the secondary structure, but may trigger their aggregation.
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Krupová M, Kessler J, Bouř P. Recent Trends in Chiroptical Spectroscopy: Theory and Applications of Vibrational Circular Dichroism and Raman Optical Activity. Chempluschem 2020; 85:561-575. [DOI: 10.1002/cplu.202000014] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2020] [Revised: 02/18/2020] [Indexed: 12/13/2022]
Affiliation(s)
- Monika Krupová
- Institute of Organic Chemistry and Biochemistry Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
- Faculty of Mathematics and PhysicsCharles University Ke Karlovu 3 12116 Prague 2 Czech Republic
| | - Jiří Kessler
- Institute of Organic Chemistry and Biochemistry Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry Academy of Sciences Flemingovo náměstí 2 16610 Prague Czech Republic
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Li G, Kessler J, Cheramy J, Wu T, Poopari MR, Bouř P, Xu Y. Transfer and Amplification of Chirality Within the “Ring of Fire” Observed in Resonance Raman Optical Activity Experiments. Angew Chem Int Ed Engl 2019; 58:16495-16498. [DOI: 10.1002/anie.201909603] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2019] [Indexed: 12/14/2022]
Affiliation(s)
- Guojie Li
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
| | - Jiří Kessler
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Joseph Cheramy
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
| | - Tao Wu
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | | | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Yunjie Xu
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
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7
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Li G, Kessler J, Cheramy J, Wu T, Poopari MR, Bouř P, Xu Y. Transfer and Amplification of Chirality Within the “Ring of Fire” Observed in Resonance Raman Optical Activity Experiments. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201909603] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Guojie Li
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
| | - Jiří Kessler
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Joseph Cheramy
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
| | - Tao Wu
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | | | - Petr Bouř
- Institute of Organic Chemistry and Biochemistry Flemingovo náměstí 2 16610 Prague Czech Republic
| | - Yunjie Xu
- Department of ChemistryUniversity of Alberta Edmonton Alberta T6G 2G2 Canada
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Wu T, Zhang W, Wang R, Zhang X. A giant chiroptical effect caused by the electric quadrupole. NANOSCALE 2017; 9:5110-5118. [PMID: 28387409 DOI: 10.1039/c6nr09419h] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Recently, there has been great interest in studying ultrasensitive detection and characterization of biomolecules using plasmonic particles, because they are of considerable importance in biomedical science and pharmaceutics. So far, all the theories on plasmon-induced circular dichroism (CD) have been based on the dipole approximation; the electric quadrupolar contribution is generally considered to be relatively small and neglected. Here we demonstrate that the electric quadrupolar contribution not only cannot be ignored, but it also plays a key role in many cases. Particularly, for the chiral medium that possesses preferential molecular orientations and is located at the hotspot of plasmonic nanostructures, the plasmonic CD strength contributed by molecular electric quadrupoles (EQs) can be two orders of magnitude higher than that contributed by molecular electric/magnetic dipoles. Unlike the case of the dipole approximation, molecular EQ associated plasmonic CD activity appears mainly at the plasmonic resonance absorptions that facilitate the optically enhanced near-field with steep electric field gradients, and is correlated with the boosted emission rate of a molecular EQ. Based on such physical understandings, we can design nanostructures to realize a giant chiroptical effect using the EQ contribution according to the requirements, which provide a new strategy for ultrasensitive detection and quantification of molecular chirality.
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Affiliation(s)
- Tong Wu
- School of Physics and Beijing Key Laboratory of Nanophotonics & Ultrafine Optoelectronic Systems, Beijing Institute of Technology, Beijing, 100081, China.
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Chulhai DV, Hu Z, Moore JE, Chen X, Jensen L. Theory of Linear and Nonlinear Surface-Enhanced Vibrational Spectroscopies. Annu Rev Phys Chem 2016; 67:541-64. [PMID: 27090843 DOI: 10.1146/annurev-physchem-040215-112347] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
The vibrational spectroscopy of molecules adsorbed on metal nanoparticles can be enhanced by many orders of magnitude so that the detection and identification of single molecules are possible. The enhancement of most linear and nonlinear vibrational spectroscopies has been demonstrated. In this review, we discuss theoretical approaches to understanding linear and nonlinear surface-enhanced vibrational spectroscopies. A unified description of enhancement mechanisms classified as either electromagnetic or chemical in nature is presented. Emphasis is placed on understanding the spectral changes necessary for interpretation of linear and nonlinear surface-enhanced vibrational spectroscopies.
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Affiliation(s)
- Dhabih V Chulhai
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802;
| | - Zhongwei Hu
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802;
| | - Justin E Moore
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802;
| | - Xing Chen
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802;
| | - Lasse Jensen
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802;
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Ostovar pour S, Rocks L, Faulds K, Graham D, Parchaňský V, Bouř P, Blanch EW. Through-space transfer of chiral information mediated by a plasmonic nanomaterial. Nat Chem 2015; 7:591-6. [DOI: 10.1038/nchem.2280] [Citation(s) in RCA: 85] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2015] [Accepted: 05/12/2015] [Indexed: 11/09/2022]
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11
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Parchaňský V, Kapitán J, Bouř P. Inspecting chiral molecules by Raman optical activity spectroscopy. RSC Adv 2014. [DOI: 10.1039/c4ra10416a] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Chulhai DV, Jensen L. Simulating Surface-Enhanced Raman Optical Activity Using Atomistic Electrodynamics-Quantum Mechanical Models. J Phys Chem A 2014; 118:9069-79. [DOI: 10.1021/jp502107f] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Dhabih V. Chulhai
- Department
of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park 16802, United States
| | - Lasse Jensen
- Department
of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park 16802, United States
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Li Y, Sheng S, Zhang Z, Liu L, Sun M. Insight into vibration mode-resolved plasmon enhanced Raman optical activity. J Colloid Interface Sci 2014; 415:165-8. [DOI: 10.1016/j.jcis.2013.10.022] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2013] [Revised: 10/09/2013] [Accepted: 10/13/2013] [Indexed: 10/26/2022]
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Nieto-Ortega B, Hierrezuelo JM, Carnero Ruiz C, López Navarrete JT, Casado J, Ramírez FJ. Unfolding Pathway of a Globular Protein by Surfactants Monitored with Raman Optical Activity. J Phys Chem Lett 2014; 5:8-13. [PMID: 26276173 DOI: 10.1021/jz402291s] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Protein denaturation by surfactants has received increased attention in the last years due to its implications in topics such as pharmaceutics, cosmetics, paints, or biotechnology. This phenomenon is highly dependent on the physicochemical (structural) properties of the denaturing agents. In this work, we have measured for the first time the Raman optical activity (ROA) of bovine serum albumin (BSA) in the presence of three surfactants (anionic, cationic, and neutral), which has allowed us to detect new spectroscopic insights of the protein-surfactant interaction that conventional Raman spectroscopy cannot. Our work proposes two new groups of ROA marker bands to explore the unfolding of BSA induced by surfactants, which are related to "polar" (amide I and III modes) and "apolar" (methylene bending and phenyl breathing modes) protein sections. The appearance of the former groups is related to the initial attack of the surfactant, while the second groups relate to the hydrophobic unfolding.
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Affiliation(s)
- Belén Nieto-Ortega
- †Department of Physical Chemistry, Faculty of Sciences and ‡Department of Applied Physics II, Engineering School, University of Málaga, 29071 Málaga, Spain
| | - José M Hierrezuelo
- †Department of Physical Chemistry, Faculty of Sciences and ‡Department of Applied Physics II, Engineering School, University of Málaga, 29071 Málaga, Spain
| | - Cristóbal Carnero Ruiz
- †Department of Physical Chemistry, Faculty of Sciences and ‡Department of Applied Physics II, Engineering School, University of Málaga, 29071 Málaga, Spain
| | - Juan Teodomiro López Navarrete
- †Department of Physical Chemistry, Faculty of Sciences and ‡Department of Applied Physics II, Engineering School, University of Málaga, 29071 Málaga, Spain
| | - Juan Casado
- †Department of Physical Chemistry, Faculty of Sciences and ‡Department of Applied Physics II, Engineering School, University of Málaga, 29071 Málaga, Spain
| | - Francisco J Ramírez
- †Department of Physical Chemistry, Faculty of Sciences and ‡Department of Applied Physics II, Engineering School, University of Málaga, 29071 Málaga, Spain
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Mai FD, Yu CC, Liu YC, Chang CC, Yang KH. Highly effective surface-enhanced Raman scattering-active gold substrates prepared by using electrochemical methods in the presence of hexadecyltrimethylammonium bromide. J Electroanal Chem (Lausanne) 2014. [DOI: 10.1016/j.jelechem.2013.11.003] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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16
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Yamamoto S, Bouř P. Transition polarizability model of induced resonance Raman optical activity. J Comput Chem 2013; 34:2152-8. [PMID: 23824951 DOI: 10.1002/jcc.23370] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2013] [Revised: 06/07/2013] [Accepted: 06/17/2013] [Indexed: 11/08/2022]
Abstract
Induced resonance Raman optical activity (IRROA) proved to be a very sensitive method to detect molecular chirality. It is exhibited, for example, by complexes of lanthanides with chiral alcohols or ketones. So far, the phenomenon has not been understood at a quantitative level. To elucidate its mechanisms and to correctly relate the spectra to the structure, a transition polarizability model (TPM) is developed and applied to a camphor-europium complex. The model well reproduces the high ROA/Raman intensity ratio of the IRROA observed experimentally. The results additionally indicate a fundamental role of the nonchiral fod ligand in the Eu(fod)3 compound for the chirality enhancement. The TPM model thus serves as a guidance for both experimental and theoretical studies to come.
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Affiliation(s)
- Shigeki Yamamoto
- Department of Chemistry, Graduate School of Science, Osaka University, Toyonaka, Osaka, 560-0043, Japan
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