1
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Wappett D, Goerigk L. Benchmarking Density Functional Theory Methods for Metalloenzyme Reactions: The Introduction of the MME55 Set. J Chem Theory Comput 2023; 19:8365-8383. [PMID: 37943578 PMCID: PMC10688432 DOI: 10.1021/acs.jctc.3c00558] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Revised: 10/13/2023] [Accepted: 10/16/2023] [Indexed: 11/10/2023]
Abstract
We present a new benchmark set of metalloenzyme model reaction energies and barrier heights that we call MME55. The set contains 10 different enzymes, representing eight transition metals, both open and closed shell systems, and system sizes of up to 116 atoms. We use four DLPNO-CCSD(T)-based approaches to calculate reference values against which we then benchmark the performance of a range of density functional approximations with and without dispersion corrections. Dispersion corrections improve the results across the board, and triple-ζ basis sets provide the best balance of efficiency and accuracy. Jacob's ladder is reproduced for the whole set based on averaged mean absolute (percent) deviations, with the double hybrids SOS0-PBE0-2-D3(BJ) and revDOD-PBEP86-D4 standing out as the most accurate methods for the MME55 set. The range-separated hybrids ωB97M-V and ωB97X-V also perform well here and can be recommended as a reliable compromise between accuracy and efficiency; they have already been shown to be robust across many other types of chemical problems, as well. Despite the popularity of B3LYP in computational enzymology, it is not a strong performer on our benchmark set, and we discourage its use for enzyme energetics.
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Affiliation(s)
- Dominique
A. Wappett
- School of Chemistry, The University
of Melbourne, Melbourne, Victoria 3010, Australia
| | - Lars Goerigk
- School of Chemistry, The University
of Melbourne, Melbourne, Victoria 3010, Australia
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2
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Carter-Fenk K, Shee J, Head-Gordon M. Optimizing the regularization in size-consistent second-order Brillouin-Wigner perturbation theory. J Chem Phys 2023; 159:171104. [PMID: 37933781 PMCID: PMC10752296 DOI: 10.1063/5.0174923] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2023] [Accepted: 10/09/2023] [Indexed: 11/08/2023] Open
Abstract
Despite its simplicity and relatively low computational cost, second-order Møller-Plesset perturbation theory (MP2) is well-known to overbind noncovalent interactions between polarizable monomers and some organometallic bonds. In such situations, the pairwise-additive correlation energy expression in MP2 is inadequate. Although energy-gap dependent amplitude regularization can substantially improve the accuracy of conventional MP2 in these regimes, the same regularization parameter worsens the accuracy for small molecule thermochemistry and density-dependent properties. Recently, we proposed a repartitioning of Brillouin-Wigner perturbation theory that is size-consistent to second order (BW-s2), and a free parameter (α) was set to recover the exact dissociation limit of H2 in a minimal basis set. Alternatively α can be viewed as a regularization parameter, where each value of α represents a valid variant of BW-s2, which we denote as BW-s2(α). In this work, we semi-empirically optimize α for noncovalent interactions, thermochemistry, alkane conformational energies, electronic response properties, and transition metal datasets, leading to improvements in accuracy relative to the ab initio parameterization of BW-s2 and MP2. We demonstrate that the optimal α parameter (α = 4) is more transferable across chemical problems than energy-gap-dependent regularization parameters. This is attributable to the fact that the BW-s2(α) regularization strength depends on all of the information encoded in the t amplitudes rather than just orbital energy differences. While the computational scaling of BW-s2(α) is iterative O(N5), this effective and transferable approach to amplitude regularization is a promising route to incorporate higher-order correlation effects at second-order cost.
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Affiliation(s)
- Kevin Carter-Fenk
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, USA
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3
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Rossomme E, Cunha LA, Li W, Chen K, McIsaac AR, Head-Gordon T, Head-Gordon M. The Good, the Bad, and the Ugly: Pseudopotential Inconsistency Errors in Molecular Applications of Density Functional Theory. J Chem Theory Comput 2023; 19:2827-2841. [PMID: 37156013 DOI: 10.1021/acs.jctc.3c00089] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
The pseudopotential (PP) approximation is one of the most common techniques in computational chemistry. Despite its long history, the development of custom PPs has not tracked with the explosion of different density functional approximations (DFAs). As a result, the use of PPs with exchange/correlation models for which they were not developed is widespread, although this practice is known to be theoretically unsound. The extent of PP inconsistency errors (PPIEs) associated with this practice has not been systematically explored across the types of energy differences commonly evaluated in chemical applications. We evaluate PPIEs for a number of PPs and DFAs across 196 chemically relevant systems of both transition-metal and main-group elements, as represented by the W4-11, TMC34, and S22 data sets. Near the complete basis set limit, these PPs are found to cleanly approach all-electron (AE) results for noncovalent interactions but introduce root-mean-squared errors (RMSEs) upwards of 15 kcal mol-1 into predictions of covalent bond energies for a number of popular DFAs. We achieve significant improvements through the use of empirical atom- and DFA-specific PP corrections, indicating considerable systematicity of the PPIEs. The results of this work have implications for chemical modeling in both molecular contexts and for DFA design, which we discuss.
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Affiliation(s)
- Elliot Rossomme
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Leonardo A Cunha
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Wanlu Li
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Kaixuan Chen
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Alexandra R McIsaac
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Teresa Head-Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Department of Bioengineering, University of California, Berkeley, California 94720, United States
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, California 94720, United States
| | - Martin Head-Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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4
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Epton RG, Unsworth WP, Lynam JM. DFT Studies of Au(I) Catalysed Reactions: Anion Effects and Reaction Selectivity. Isr J Chem 2022. [DOI: 10.1002/ijch.202200033] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Ryan G. Epton
- Department of Chemistry University of York Heslington, York YO10 5DD UK
| | | | - Jason M. Lynam
- Department of Chemistry University of York Heslington, York YO10 5DD UK
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5
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Leach IF, Belpassi L, Belanzoni P, Havenith RWA, Klein JEMN. Efficient Computation of Geometries for Gold Complexes. Chemphyschem 2021; 22:1262-1268. [PMID: 33729673 PMCID: PMC8252628 DOI: 10.1002/cphc.202001052] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 02/23/2021] [Indexed: 12/21/2022]
Abstract
Computationally obtaining structural parameters along a reaction coordinate is commonly performed with Kohn‐Sham density functional theory which generally provides a good balance between speed and accuracy. However, CPU times still range from inconvenient to prohibitive, depending on the size of the system under study. Herein, the tight binding GFN2‐xTB method [C. Bannwarth, S. Ehlert, S. Grimme, J. Chem. Theory Comput. 2019, 15, 1652] is investigated as an alternative to produce reasonable geometries along a reaction path, that is, reactant, product and transition state structures for a series of transformations involving gold complexes. A small mean error (1 kcal/mol) was found, with respect to an efficient composite hybrid‐GGA exchange‐correlation functional (PBEh‐3c) paired with a double‐ζ basis set, which is 2–3 orders of magnitude slower. The outlined protocol may serve as a rapid tool to probe the viability of proposed mechanistic pathways in the field of gold catalysis.
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Affiliation(s)
- Isaac F Leach
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, 9747, AG Groningen, The Netherlands.,Zernike Institute for Advanced Materials, University of Groningen, 9747, AG Groningen, The Netherlands
| | - Leonardo Belpassi
- CNR Institute of Chemical Science and Technologies, "Giulio Natta" (CNR-SCITEC), via Elce di Sotto 8, 06123, Perugia, Italy
| | - Paola Belanzoni
- CNR Institute of Chemical Science and Technologies, "Giulio Natta" (CNR-SCITEC), via Elce di Sotto 8, 06123, Perugia, Italy.,Department of Chemistry, Biology and Biotechnology, University of Perugia, via Elce di Sotto 8, 06123, Perugia, Italy
| | - Remco W A Havenith
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, 9747, AG Groningen, The Netherlands.,Zernike Institute for Advanced Materials, University of Groningen, 9747, AG Groningen, The Netherlands.,Ghent Quantum Chemistry Group, Department of Inorganic and Physical Chemistry, Ghent University, 9000, Gent, Belgium
| | - Johannes E M N Klein
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, University of Groningen, 9747, AG Groningen, The Netherlands
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6
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Foscue C, Brown H, Walden K, Hession D, Taylor WS, Provorse Long M. Near-Thermal Reactions of Au +( 1S, 3D) and AuX + with CH 3X (X = Br, I): A Combined Experimental and Computational Analysis. J Phys Chem A 2021; 125:1696-1710. [PMID: 33616399 DOI: 10.1021/acs.jpca.0c11007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Reactions of Au+(1S,3D) and AuX+ with CH3X (X = I and Br) were performed in the gas phase by utilizing a selected-ion drift cell reactor. These experiments were done at room temperature as well as reduced temperature (∼200 K) at a total pressure of 3.5 Torr in helium. Rate coefficients, product sequencing, and branching fractions were obtained for all reactions to evaluate reaction efficiencies and higher-order processes. Reactions of both Au+ states proceed with moderate efficiencies as compared to the average dipole orientation model with these neutral substrates. Results from this work revealed that, dependent on the reacting partner, Au+(1S) exhibits, among others, halogen abstraction, HX elimination, and association. By comparison, Au+(3D) participates primarily in charge transfer and halogen abstraction. Dependent on the halogen ligand, AuX+ ions induce several processes, including association, charge transfer, halogen loss, and halogen substitution. AuI+ reacting with CH3Br resulted in association exclusively, whereas the AuI+/CH3I and AuBr+/CH3Br systems exhibited halogen loss as the dominant process. By contrast, all possible bimolecular pathways occurred in the reaction of AuBr+ with CH3I. Observed products indicate that displacement of bromine by iodine on gold is favored in ionic products, consistent with the thermochemical preference for formation of the Au+-I bond. All AuX+ reactions proceed at maximum efficiency. Potential energy surfaces calculated at the B3LYP/def2-TZVPP level of theory for the AuX+ reactions are in good agreement with the available thermochemistry for these species and with previously calculated structures and energetics. Experimental and computational results are consistent with a mechanism for the AuX+/CH3Y systems where bimolecular products occur either via direct loss of the halogen originally on Au or via a common intermediate resulting from methyl migration in which the Au center is three-coordinate.
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Affiliation(s)
- Camille Foscue
- Department of Chemistry, University of Central Arkansas, Conway, Arkansas 72035, United States
| | - Hayden Brown
- Department of Chemistry, University of Central Arkansas, Conway, Arkansas 72035, United States
| | - Kathryn Walden
- Department of Chemistry, University of Central Arkansas, Conway, Arkansas 72035, United States
| | - Dayna Hession
- Department of Chemistry, University of Central Arkansas, Conway, Arkansas 72035, United States
| | - William S Taylor
- Department of Chemistry, University of Central Arkansas, Conway, Arkansas 72035, United States
| | - Makenzie Provorse Long
- Department of Chemistry, University of Central Arkansas, Conway, Arkansas 72035, United States
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7
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Förster A, Visscher L. Double hybrid DFT calculations with Slater type orbitals. J Comput Chem 2020; 41:1660-1684. [PMID: 32297682 PMCID: PMC7317772 DOI: 10.1002/jcc.26209] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 03/31/2020] [Accepted: 04/01/2020] [Indexed: 12/14/2022]
Abstract
On a comprehensive database with 1,644 datapoints, covering several aspects of main-group as well as of transition metal chemistry, we assess the performance of 60 density functional approximations (DFA), among them 36 double hybrids (DH). All calculations are performed using a Slater type orbital (STO) basis set of triple-ζ (TZ) quality and the highly efficient pair atomic resolution of the identity approach for the exchange- and Coulomb-term of the KS matrix (PARI-K and PARI-J, respectively) and for the evaluation of the MP2 energy correction (PARI-MP2). Employing the quadratic scaling SOS-AO-PARI-MP2 algorithm, DHs based on the spin-opposite-scaled (SOS) MP2 approximation are benchmarked against a database of large molecules. We evaluate the accuracy of STO/PARI calculations for B3LYP as well as for the DH B2GP-PLYP and show that the combined basis set and PARI-error is comparable to the one obtained using the well-known def2-TZVPP Gaussian-type basis set in conjunction with global density fitting. While quadruple-ζ (QZ) calculations are currently not feasible for PARI-MP2 due to numerical issues, we show that, on the TZ level, Jacob's ladder for classifying DFAs is reproduced. However, while the best DHs are more accurate than the best hybrids, the improvements are less pronounced than the ones commonly found on the QZ level. For conformers of organic molecules and noncovalent interactions where very high accuracy is required for qualitatively correct results, DHs provide only small improvements over hybrids, while they still excel in thermochemistry, kinetics, transition metal chemistry and the description of strained organic systems.
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Affiliation(s)
- Arno Förster
- Theoretical ChemistryVrije UniversiteitAmsterdamThe Netherlands
| | - Lucas Visscher
- Theoretical ChemistryVrije UniversiteitAmsterdamThe Netherlands
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8
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Rudshteyn B, Coskun D, Weber JL, Arthur EJ, Zhang S, Reichman DR, Friesner RA, Shee J. Predicting Ligand-Dissociation Energies of 3d Coordination Complexes with Auxiliary-Field Quantum Monte Carlo. J Chem Theory Comput 2020; 16:3041-3054. [DOI: 10.1021/acs.jctc.0c00070] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Affiliation(s)
- Benjamin Rudshteyn
- Department of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
| | - Dilek Coskun
- Department of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
| | - John L. Weber
- Department of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
| | - Evan J. Arthur
- Schrodinger Inc., 120 West 45th Street, New York, New York 10036, United States
| | - Shiwei Zhang
- Center for Computational Quantum Physics, Flatiron Institute, 162 5th Avenue, New York, New York 10010, United States
- Department of Physics, College of William and Mary, Williamsburg, Virginia 23187, United States
| | - David R. Reichman
- Department of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
| | - Richard A. Friesner
- Department of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
| | - James Shee
- Department of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
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9
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Dohm S, Bursch M, Hansen A, Grimme S. Semiautomated Transition State Localization for Organometallic Complexes with Semiempirical Quantum Chemical Methods. J Chem Theory Comput 2020; 16:2002-2012. [DOI: 10.1021/acs.jctc.9b01266] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Sebastian Dohm
- Mulliken Center for Theoretical Chemistry, Rheinische Friedrich-Wilhelms-Universität Bonn, 53115 Bonn, Germany
| | - Markus Bursch
- Mulliken Center for Theoretical Chemistry, Rheinische Friedrich-Wilhelms-Universität Bonn, 53115 Bonn, Germany
| | - Andreas Hansen
- Mulliken Center for Theoretical Chemistry, Rheinische Friedrich-Wilhelms-Universität Bonn, 53115 Bonn, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Rheinische Friedrich-Wilhelms-Universität Bonn, 53115 Bonn, Germany
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10
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Wang Y, Cai PJ, Yu ZX. Mechanistic Study on Gold-Catalyzed Cycloisomerization of Dienediynes Involving Aliphatic C-H Functionalization and Inspiration for Developing a New Strategy to Access Polycarbocycles. J Am Chem Soc 2020; 142:2777-2786. [PMID: 31950827 DOI: 10.1021/jacs.9b10362] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Previously, we developed a gold-catalyzed cycloisomerization of dienediynes to synthesize the fused 6,7,5-tricyclic compounds. This reaction involves aliphatic C-H functionalization under mild conditions with high regio- and diastereoselectivities. Herein, we present a combined density functional theory (DFT) and experimental study to understand its mechanism. The reaction starts with a 6-endo-dig cyclization to generate a cis-1-alkynyl-2-alkenylcyclopropane. Then, a Cope rearrangement takes place to give a seven-membered-ring allene intermediate, whose central carbon atom possesses vinyl cation character and thus is highly reactive toward aliphatic C-H insertion. After the C-H insertion, two successive [1,2]-hydride shifts then occur to give the tricyclic product and to complete the catalytic cycle. Notably, steric effect induced by the bulky ligand is found to be important for the diastereocontrol in the C-H insertion step. DFT calculations suggested that the malonate-tethered substrate utilized in our previous work may undergo an undesired 5-exo-dig cyclization under gold catalysis, which could be the reason why the desired fused 6,7,5-tricarbocyclic product was not generated. These mechanistic insights then guided us to design substrates with a shortened carbon tether in the present work to inhibit the exo-dig cyclization so that the tandem cyclopropanation/Cope rearrangement/C-H functionalization could occur to construct polycarbocycles containing a seven-membered ring. This prediction was supported by new experiments, providing a new strategy to access fused 5,7,5-tricyclic and 5,7,6,6-tetracyclic carbocycles. In addition, how the substituents affect the chemoselectivity was also investigated.
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Affiliation(s)
- Yi Wang
- Beijing National Laboratory for Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry , Peking University , Beijing 100871 , China
| | - Pei-Jun Cai
- Beijing National Laboratory for Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry , Peking University , Beijing 100871 , China
| | - Zhi-Xiang Yu
- Beijing National Laboratory for Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry , Peking University , Beijing 100871 , China
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11
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Cerón-Carrasco JP, Zúñiga J, Requena A. Tuning the Optical Properties of Novel Antitumoral Drugs Based on Cyclometalated Iridium(III) Complexes. J Phys Chem A 2019; 123:8644-8649. [PMID: 31536343 DOI: 10.1021/acs.jpca.9b06216] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Most of the current efforts in drug discovery are devoted to the design of molecules able to mitigate side effects by concentrating the biological action in the targeted tissue. One promising strategy is photodynamic therapy, which is based on the in situ generation of reactive singlet oxygen upon radiation exposure. However, such an approach requires the use of an efficient photosensitizer. This contribution deals with the optical properties of an Ir(III) complex, [Ir(pbz)2(N^N)] (pbz = 2-phenylbenzimidazole; N^N = methyl 1-butyl-2-pyridyl-benzimidazole-5-carboxylate), which has recently been shown to exhort a strong photoactivity, but still needs further improvements to reach clinical applications. We performed density functional theory calculations at the M06, PBE0, ωB97xD, and CAM-B3LYP levels to predict the impact of introducing electron donor-acceptor groups into the nature of the lowest excited states. The simulations performed demonstrate that the presence of a NH2 at the pbz ligand and a NO2 group at the N^N ligand yield a bathochromic shift of absorption spectrum. We report the most sensitive positions to tune the optical signatures of this family of complexes.
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Affiliation(s)
- José Pedro Cerón-Carrasco
- Bioinformatics and High Performance Computing Research Group (BIO-HPC) Universidad Católica San Antonio de Murcia (UCAM) Campus de los Jerónimos , 30107 , Murcia , Spain and
| | - José Zúñiga
- Departamento de Química Física , Universidad de Murcia , 30100 Murcia , Spain
| | - Alberto Requena
- Departamento de Química Física , Universidad de Murcia , 30100 Murcia , Spain
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12
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Shiekh BA. Hierarchy of Commonly Used DFT Methods for Predicting the Thermochemistry of Rh-Mediated Chemical Transformations. ACS OMEGA 2019; 4:15435-15443. [PMID: 31572844 PMCID: PMC6761679 DOI: 10.1021/acsomega.9b01563] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/28/2019] [Accepted: 09/04/2019] [Indexed: 06/10/2023]
Abstract
The accuracy and reliability of 17 commonly used density functionals in conjunction with Poisson-Boltzmann finite solvation model were gauged for predicting the free energy of Rh(I)- and Rh(III)-mediated chemical transformations such as ligand exchange, hydride elimination, dihydrogen elimination, chloride affinity, and silyl hydride bond activation reactions. In total, six Rh-mediated reactions were examined, and the computed density functional theory results were then subjected to comparison with the experimentally reported values. For reaction A, involving replacement of N2 with η2-H2 over Rh(I), MPWB1K-D3, B3PW91, B3LYP, and BHandHYLP emerged to be the best functionals of all the tested methods in terms of their deviations ≤2 kcal mol-1 from experimental data. For reaction B, in which exchange of η2-C2H4 with N2 over Rh(I) takes place, MPWB1K-D3 and M06-2X-D3 functionals performed the best, while as for reaction C (hydride elimination reaction in Rh(III) complex), it is PBE functional that showed impressive performance. Similarly, for reaction D (H2 elimination reaction in Rh(III) complex), PBE0-D3 and PBE-D3 showed exceptional results compared to other functionals. For reaction E (H2O/Cl- exchange), the PBE0 again shows impressive performance as compared to other functionals. For reaction F (Si-H activation), M06-2X-D3, PBE0-D3, and MPWB1K-D3 functionals are undoubtedly the best functionals. Overall, PBE0-D3 and MPWB1K-D3 functionals were impressive in all cases with lowest mean unsigned errors (3.2 and 3.4 kcal mol-1, respectively) with respect to experimental Gibbs free energies. Thus, these two functionals are recommended for studying Rh-mediated chemical transformations.
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13
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Sun G, Sautet P. Toward Fast and Reliable Potential Energy Surfaces for Metallic Pt Clusters by Hierarchical Delta Neural Networks. J Chem Theory Comput 2019; 15:5614-5627. [DOI: 10.1021/acs.jctc.9b00465] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Geng Sun
- Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Philippe Sautet
- Department of Chemical and Biomolecular Engineering, University of California, Los Angeles, Los Angeles, California 90095, United States
- Department of Chemistry and Biochemistry, University of California, Los Angeles, Los Angeles, California 90095, United States
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14
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Li CL, Yu ZX. Asymmetric Synthesis of Azepine-Fused Cyclobutanes from Yne-Methylenecyclopropanes Involving Cyclopropanation/C–C Cleavage/Wagner–Meerwein Rearrangement and Reaction Mechanism. J Org Chem 2019; 84:9913-9928. [DOI: 10.1021/acs.joc.9b01071] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Chen-Long Li
- Beijing National Laboratory for Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry, Peking University, Beijing 100871, China
| | - Zhi-Xiang Yu
- Beijing National Laboratory for Molecular Sciences (BNLMS), Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry, Peking University, Beijing 100871, China
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15
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Chan B, Gill PMW, Kimura M. Assessment of DFT Methods for Transition Metals with the TMC151 Compilation of Data Sets and Comparison with Accuracies for Main-Group Chemistry. J Chem Theory Comput 2019; 15:3610-3622. [PMID: 31150234 DOI: 10.1021/acs.jctc.9b00239] [Citation(s) in RCA: 78] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
In the present study, we have gathered a collection (that we term TMC151) of accurate reference data for transition-metal reactions for the assessment of quantum chemistry methods. It comprises diatomic dissociation energies and reaction energies and barriers for prototypical transition-metal reactions. Our assessment of a diverse range of different types of DFT methods shows that the most accurate functionals include ωB97M-V, ωB97X-V, MN15, and B97M-rV. Notably, they have also been previously validated to be highly robust for main-group chemistry. Nevertheless, even these methods show substantially worse accuracies for transition metals than for main-group chemistry. For less accurate methods, there is not a good correlation between their accuracies for main-group and transition-metal chemistries. Thus, in the development of new DFT, it is important to assess the accuracies for both types of data. In this regard, we have formulated the TMC34 model for efficient assessment of the performance for transition metals, which complements our previously developed MG8 model for main-group chemistry. Together, they provide a cost-effective means for initial assessment of new methodologies.
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Affiliation(s)
- Bun Chan
- Graduate School of Engineering , Nagasaki University , Bunkyo 1-14 , Nagasaki 852-8521 , Japan
| | - Peter M W Gill
- Research School of Chemistry , Australian National University , Canberra , Australian Capital Territory 2601 , Australia
| | - Masanari Kimura
- Graduate School of Engineering , Nagasaki University , Bunkyo 1-14 , Nagasaki 852-8521 , Japan
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16
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Gregori L, Sorbelli D, Belpassi L, Tarantelli F, Belanzoni P. Alkyne Activation with Gold(III) Complexes: A Quantitative Assessment of the Ligand Effect by Charge-Displacement Analysis. Inorg Chem 2019; 58:3115-3129. [PMID: 30775914 DOI: 10.1021/acs.inorgchem.8b03172] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
A quantitative assessment of the Dewar-Chatt-Duncanson components of the Au(III)-alkyne bond in a series of cationic and dicationic bis- and monocyclometalated gold(III) complexes with 2-butyne via charge-displacement (CD) analysis is reported. Bonding between Au(III) and 2-butyne invariably shows a dominant σ donation component, a smaller, but significant, π back-donation, and a remarkable polarization of the alkyne CC triple bond toward the metal fragment. A very large net electron charge transfer from CC triple bond to the metal fragment results, which turns out to be unexpectedly insensitive to the charge of the complex and more strictly related to the nature of the ancillary ligand. The combination of σ donation, π back-donation, and polarization effects is in fact modulated by the different ligand frameworks, with ligands bearing atoms different from carbon in trans position with respect to the alkyne emerging as especially interesting for both imparting Au(III)-alkyne bond stability and inducing a more effective alkyne activation. A first attempt to figure out a rationale on the bonding/reactivity relationship for Au(III)-alkyne is made by performing a comparative study in a model nucleophilic attack of water to the alkyne triple bond. Smaller π back-donation facilitates alkyne slippage in the transition states, which is energetically less demanding for Au(III) than for Au(I), and suggests a greater propensity of Au(III) to facilitate the nucleophilic attack.
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Affiliation(s)
- Luca Gregori
- Dipartimento di Chimica, Biologia e Biotecnologie , Università degli Studi di Perugia , via Elce di Sotto 8 , I-06123 Perugia , Italy
| | - Diego Sorbelli
- Dipartimento di Chimica, Biologia e Biotecnologie , Università degli Studi di Perugia , via Elce di Sotto 8 , I-06123 Perugia , Italy
| | - Leonardo Belpassi
- Istituto di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM) , c/o Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8 , I-06123 Perugia , Italy.,Consortium for Computational Molecular and Materials Sciences (CMS)2 , via Elce di Sotto 8 , I-06123 Perugia , Italy
| | - Francesco Tarantelli
- Dipartimento di Chimica, Biologia e Biotecnologie , Università degli Studi di Perugia , via Elce di Sotto 8 , I-06123 Perugia , Italy.,Istituto di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM) , c/o Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8 , I-06123 Perugia , Italy.,Consortium for Computational Molecular and Materials Sciences (CMS)2 , via Elce di Sotto 8 , I-06123 Perugia , Italy
| | - Paola Belanzoni
- Dipartimento di Chimica, Biologia e Biotecnologie , Università degli Studi di Perugia , via Elce di Sotto 8 , I-06123 Perugia , Italy.,Istituto di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM) , c/o Dipartimento di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8 , I-06123 Perugia , Italy.,Consortium for Computational Molecular and Materials Sciences (CMS)2 , via Elce di Sotto 8 , I-06123 Perugia , Italy
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17
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Morgante P, Peverati R. ACCDB: A collection of chemistry databases for broad computational purposes. J Comput Chem 2018; 40:839-848. [DOI: 10.1002/jcc.25761] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2018] [Revised: 10/09/2018] [Accepted: 11/11/2018] [Indexed: 01/04/2023]
Affiliation(s)
- Pierpaolo Morgante
- Chemistry Program; Florida Institute of Technology, 150 W. University Blvd.; Melbourne Florida, 32901
| | - Roberto Peverati
- Chemistry Program; Florida Institute of Technology, 150 W. University Blvd.; Melbourne Florida, 32901
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18
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Hu L, Chen H. Comparative computational study on C-C/C-N/C-Br bond formations in Rh(III)-catalyzed C-H functionalizations: Stepwise versus concerted mechanisms. J Organomet Chem 2018. [DOI: 10.1016/j.jorganchem.2018.02.012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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19
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Dohm S, Hansen A, Steinmetz M, Grimme S, Checinski MP. Comprehensive Thermochemical Benchmark Set of Realistic Closed-Shell Metal Organic Reactions. J Chem Theory Comput 2018; 14:2596-2608. [DOI: 10.1021/acs.jctc.7b01183] [Citation(s) in RCA: 138] [Impact Index Per Article: 23.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Sebastian Dohm
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Beringstraße 4, 53115 Bonn, Germany
| | - Andreas Hansen
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Beringstraße 4, 53115 Bonn, Germany
| | - Marc Steinmetz
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Beringstraße 4, 53115 Bonn, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie, Universität Bonn, Beringstraße 4, 53115 Bonn, Germany
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20
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Hu L, Chen K, Chen H. Modeling σ-Bond Activations by Nickel(0) Beyond Common Approximations: How Accurately Can We Describe Closed-Shell Oxidative Addition Reactions Mediated by Low-Valent Late 3d Transition Metal? J Chem Theory Comput 2017; 13:4841-4853. [PMID: 28881134 DOI: 10.1021/acs.jctc.7b00708] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Accurate modelings of reactions involving 3d transition metals (TMs) are very challenging to both ab initio and DFT approaches. To gain more knowledge in this field, we herein explored typical σ-bond activations of H-H, C-H, C-Cl, and C-C bonds promoted by nickel(0), a low-valent late 3d TM. For the key parameters of activation energy (ΔE‡) and reaction energy (ΔER) for these reactions, various issues related to the computational accuracy were systematically investigated. From the scrutiny of convergence issue with one-electron basis set, augmented (A) basis functions are found to be important, and the CCSD(T)/CBS level with complete basis set (CBS) limit extrapolation based on augmented double-ζ and triple-ζ basis pair (ADZ and ATZ), which produces deviations below 1 kcal/mol from the reference, is recommended for larger systems. As an alternative, the explicitly correlated F12 method can accelerate the basis set convergence further, especially after its CBS extrapolations. Thus, the CCSD(T)-F12/CBS(ADZ-ATZ) level with computational cost comparable to the conventional CCSD(T)/CBS(ADZ-ATZ) level, is found to reach the accuracy of the conventional CCSD(T)/A5Z level, which produces deviations below 0.5 kcal/mol from the reference, and is also highly recommendable. Scalar relativistic effects and 3s3p core-valence correlation are non-negligible for achieving chemical accuracy of around 1 kcal/mol. From the scrutiny of convergence issue with the N-electron basis set, in comparison with the reference CCSDTQ result, CCSD(T) is found to be able to calculate ΔE‡ quite accurately, which is not true for the ΔER calculations. Using highest-level CCSD(T) results of ΔE‡ in this work as references, we tested 18 DFT methods and found that PBE0 and CAM-B3LYP are among the three best performing functionals, irrespective of DFT empirical dispersion correction. With empirical dispersion correction included, ωB97XD is also recommendable due to its improved performance.
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Affiliation(s)
- Lianrui Hu
- Beijing National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China
| | - Kejuan Chen
- Beijing National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China
| | - Hui Chen
- Beijing National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China
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21
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Cerón-Carrasco JP, Ruiz J, Vicente C, de Haro C, Bautista D, Zúñiga J, Requena A. DFT Simulation of Structural and Optical Properties of 9-Aminoacridine Half-Sandwich Ru(II), Rh(III), and Ir(III) Antitumoral Complexes and Their Interaction with DNA. J Chem Theory Comput 2017. [DOI: 10.1021/acs.jctc.7b00139] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- José Pedro Cerón-Carrasco
- Bioinformatics
and High Performance Computing Research Group (BIO-HPC), Universidad Católica San Antonio de Murcia (UCAM), Campus de los
Jerónimos, 30107 Murcia, Spain
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22
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D’Amore L, Ciancaleoni G, Belpassi L, Tarantelli F, Zuccaccia D, Belanzoni P. Unraveling the Anion/Ligand Interplay in the Reaction Mechanism of Gold(I)-Catalyzed Alkoxylation of Alkynes. Organometallics 2017. [DOI: 10.1021/acs.organomet.7b00377] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Lorenzo D’Amore
- Institut
de Química Computacional i Catàlisi (IQCC), Departament
de Química, Universitat de Girona, Campus Montilivi, 17003 Girona, Catalonia, Spain
| | - Gianluca Ciancaleoni
- Dipartimento
di Chimica e Chimica Industriale, Università di Pisa, via Giuseppe
Moruzzi 13, I-56124 Pisa, Italy
| | - Leonardo Belpassi
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM) c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce
di Sotto 8, I-06123 Perugia, Italy
| | - Francesco Tarantelli
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM) c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce
di Sotto 8, I-06123 Perugia, Italy
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce
di Sotto 8, I-06123 Perugia, Italy
| | - Daniele Zuccaccia
- Dipartimento
di Scienze Agroalimentari, Ambientali e Animali, Sezione di Chimica, Università di Udine, via Cotonificio 108, I-33100 Udine, Italy
| | - Paola Belanzoni
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM) c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce
di Sotto 8, I-06123 Perugia, Italy
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università di Perugia, via Elce
di Sotto 8, I-06123 Perugia, Italy
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23
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Dong C, Ji M, Yang X, Yao J, Chen H. Mechanisms of the transfer hydroformylation catalyzed by rhodium, cobalt, and iridium complexes: Insights from density functional theory study. J Organomet Chem 2017. [DOI: 10.1016/j.jorganchem.2017.01.021] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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24
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Casals-Cruañas È, González-Belman OF, Besalú-Sala P, Nelson DJ, Poater A. The preference for dual-gold(i) catalysis in the hydro(alkoxylation vs. phenoxylation) of alkynes. Org Biomol Chem 2017; 15:6416-6425. [DOI: 10.1039/c7ob01457k] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Dinuclear gold complexes and their use in catalysis have received significant recent attention, but there are few critical comparisons of mono- versus dual gold-catalysed pathways.
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Affiliation(s)
- Èric Casals-Cruañas
- Institut de Química Computacional i Catàlisi
- Departament de Química
- University de Girona
- 17003 Girona
- Spain
| | - Oscar F. González-Belman
- Institut de Química Computacional i Catàlisi
- Departament de Química
- University de Girona
- 17003 Girona
- Spain
| | - Pau Besalú-Sala
- Institut de Química Computacional i Catàlisi
- Departament de Química
- University de Girona
- 17003 Girona
- Spain
| | - David J. Nelson
- WestCHEM Department of Pure and Applied Chemistry
- University of Strathclyde
- Glasgow
- UK
| | - Albert Poater
- Institut de Química Computacional i Catàlisi
- Departament de Química
- University de Girona
- 17003 Girona
- Spain
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25
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Hu L, Chen H. What Factors Control the Reactivity of Cobalt–Imido Complexes in C–H Bond Activation via Hydrogen Abstraction? ACS Catal 2016. [DOI: 10.1021/acscatal.6b02694] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Lianrui Hu
- Beijing
National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory
of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
- University of Chinese Academy of Sciences, Beijing 100049, People’s Republic of China
| | - Hui Chen
- Beijing
National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory
of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
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26
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Affiliation(s)
- Kathrin H. Hopmann
- Centre for Theoretical and
Computational Chemistry (CTCC) and Department of Chemistry, University of Tromsø - The Artic University of Norway, N-9037 Tromsø, Norway
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27
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Attia AAA, Silaghi-Dumitrescu R. A mononuclear non-heme-iron dioxygen-carrying protein? J Mol Graph Model 2016; 69:103-10. [PMID: 27607306 DOI: 10.1016/j.jmgm.2016.09.001] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2016] [Revised: 08/31/2016] [Accepted: 09/01/2016] [Indexed: 10/21/2022]
Abstract
The ability of mononuclear non-heme iron complexes to function as molecular oxygen transporters is investigated by density functional theory. The factors governing the efficiency of the reversible binding of dioxygen at the active site of the dinuclear non-heme iron enzyme hemerythrin, including antiferromagnetic coupling and the conversion of dioxygen to hydroperoxo by a proton coupled 2-electron transfer mechanism, are revisited and considered as possible tools in mononuclear non-heme complexes. Several mononuclear non-heme model complexes, including active sites of enzymes already known to interact with dioxgenic ligands, are constructed and the molecular oxygen transportation capabilities of these complexes are examined computationally. The high-spin nature of the ground state of these complexes implies an intrinsic kinetic lability of the oxy structures, as also evident from potential energy surface calculations towards iron-dioxygen cleavage. Proton affinities as calibrated with reference compounds showed that these complexes are highly unlikely to undergo protonation to form hydroperoxo-like adducts. Mixed superoxo descriptions of the dissociated dioxygenic ligands in all complexes add to the overall conclusion that these model structures are significantly disadvantaged in any attempt to be employed for molecular oxygen transportation.
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Affiliation(s)
- Amr A A Attia
- Department of Chemistry, Faculty of Chemistry and Chemical Engineering, Babeş-Bolyai University, Cluj-Napoca, Romania.
| | - Radu Silaghi-Dumitrescu
- Department of Chemistry, Faculty of Chemistry and Chemical Engineering, Babeş-Bolyai University, Cluj-Napoca, Romania.
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28
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Jaroschik F, Simonneau A, Lemière G, Cariou K, Agenet N, Amouri H, Aubert C, Goddard JP, Lesage D, Malacria M, Gimbert Y, Gandon V, Fensterbank L. Assessing Ligand and Counterion Effects in the Noble Metal Catalyzed Cycloisomerization Reactions of 1,6-Allenynes: a Combined Experimental and Theoretical Approach. ACS Catal 2016. [DOI: 10.1021/acscatal.5b02696] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Florian Jaroschik
- Sorbonne Universités, UPMC Univ Paris 06 and
CNRS, IPCM (UMR 8232), F-75005 Paris, France
| | - Antoine Simonneau
- Sorbonne Universités, UPMC Univ Paris 06 and
CNRS, IPCM (UMR 8232), F-75005 Paris, France
| | - Gilles Lemière
- Sorbonne Universités, UPMC Univ Paris 06 and
CNRS, IPCM (UMR 8232), F-75005 Paris, France
| | - Kevin Cariou
- Sorbonne Universités, UPMC Univ Paris 06 and
CNRS, IPCM (UMR 8232), F-75005 Paris, France
| | - Nicolas Agenet
- Sorbonne Universités, UPMC Univ Paris 06 and
CNRS, IPCM (UMR 8232), F-75005 Paris, France
| | - Hani Amouri
- Sorbonne Universités, UPMC Univ Paris 06 and
CNRS, IPCM (UMR 8232), F-75005 Paris, France
| | - Corinne Aubert
- Sorbonne Universités, UPMC Univ Paris 06 and
CNRS, IPCM (UMR 8232), F-75005 Paris, France
| | - Jean-Philippe Goddard
- Sorbonne Universités, UPMC Univ Paris 06 and
CNRS, IPCM (UMR 8232), F-75005 Paris, France
| | - Denis Lesage
- Sorbonne Universités, UPMC Univ Paris 06 and
CNRS, IPCM (UMR 8232), F-75005 Paris, France
| | - Max Malacria
- Sorbonne Universités, UPMC Univ Paris 06 and
CNRS, IPCM (UMR 8232), F-75005 Paris, France
| | - Yves Gimbert
- Université Grenoble Alpes and CNRS, DCM (UMR 5250), F-38000 Grenoble, France
| | - Vincent Gandon
- Institut
de Chimie Moléculaire et des Matériaux d’Orsay,
CNRS UMR 8182, Université Paris-Sud, Université Paris-Saclay, Bâtiment
420, 91405 Orsay cedex, France
| | - Louis Fensterbank
- Sorbonne Universités, UPMC Univ Paris 06 and
CNRS, IPCM (UMR 8232), F-75005 Paris, France
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29
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Gurtu S, Rai S, Ehara M, Priyakumar UD. Ability of density functional theory methods to accurately model the reaction energy pathways of the oxidation of CO on gold cluster: A benchmark study. Theor Chem Acc 2016. [DOI: 10.1007/s00214-016-1852-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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30
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Mazzone G, Russo N, Sicilia E. Catalytic role of dinuclear σ,π-acetylide gold(I) complexes in the hydroamination of terminal alkynes: theoretical insights. J Chem Theory Comput 2016; 11:581-90. [PMID: 26580915 DOI: 10.1021/ct500849m] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A detailed density functional theory (DFT) investigation of the hydroamination of 1-octyne with aniline mediated by a σ,π-digold(I) bulky phosphine-based complex was undertaken in order to shed light on the mechanistic aspects of such processes. With the purpose to probe whether the performance that the cationic digold complexes exhibit is superior to those of mononuclear complexes, the same hydroamination reaction was explored by considering separately the reaction of aniline with both the monogold(I) complexes formed by π- and σ-coordination of 1-octyne to the dialkylbiarylphosphine Au(I) precatalyst. The outcomes of the computational analysis presented here show that, when the σ,π-digold alkynide complex can be formed, the reaction is not necessarily assisted by such a complex, as the computed energy barrier is almost equal to that found when the π-coordinated alkyne mononuclear gold complex is involved in the hydroamination process. The catalytic assistance of the Au(I)-σ-alkynyl complex, instead, can be surely excluded as the hydroamination product is formed by overcoming an energy barrier significantly higher than that computed when both σ,π-digold and π-coordinated alkyne monogold complexes assist the reaction. Moreover, regardless of the implicated gold(I) species, the investigated mechanism accounts for the Markovnikov selectivity of the reaction, confirming the experimental evidence. The proposed mechanisms for the conversion of Au(I) π-coordinated alkyne complexes into the corresponding σ,π-digold alkynide complexes were also explored.
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Affiliation(s)
- Gloria Mazzone
- Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria , I-87036 Arcavacata di Rende, Italy
| | - Nino Russo
- Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria , I-87036 Arcavacata di Rende, Italy.,Division de Ciencias Basicas e Ingenieria, Departamento de Quimica, Universidad Autonoma Metropolitana-Iztapalapa , Av. San Rafael Atlixco No. 186, Col. Vicentina, CP 09340 Mexico
| | - Emilia Sicilia
- Dipartimento di Chimica e Tecnologie Chimiche, Università della Calabria , I-87036 Arcavacata di Rende, Italy
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31
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Trinchillo M, Belanzoni P, Belpassi L, Biasiolo L, Busico V, D’Amora A, D’Amore L, Del Zotto A, Tarantelli F, Tuzi A, Zuccaccia D. Extensive Experimental and Computational Study of Counterion Effect in the Reaction Mechanism of NHC-Gold(I)-Catalyzed Alkoxylation of Alkynes. Organometallics 2016. [DOI: 10.1021/acs.organomet.5b00925] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marina Trinchillo
- Dipartimento
di Scienze Chimiche, Università Federico II di Napoli, Via Cintia
4, Complesso Universitario di Monte Sant’Angelo, I-80126 Napoli, Italy
| | - Paola Belanzoni
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, Via Elce di Sotto 8, I-06123 Perugia, Italy
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM), c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8, I-06123 Perugia, Italy
| | - Leonardo Belpassi
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM), c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8, I-06123 Perugia, Italy
| | - Luca Biasiolo
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM), c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8, I-06123 Perugia, Italy
- Dipartimento
di Chimica, Fisica e Ambiente, Università di Udine, Via Cotonificio
108, I-33100 Udine, Italy
| | - Vincenzo Busico
- Dipartimento
di Scienze Chimiche, Università Federico II di Napoli, Via Cintia
4, Complesso Universitario di Monte Sant’Angelo, I-80126 Napoli, Italy
| | - Angela D’Amora
- Dipartimento
di Scienze Chimiche, Università Federico II di Napoli, Via Cintia
4, Complesso Universitario di Monte Sant’Angelo, I-80126 Napoli, Italy
| | - Lorenzo D’Amore
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, Via Elce di Sotto 8, I-06123 Perugia, Italy
| | - Alessandro Del Zotto
- Dipartimento
di Chimica, Fisica e Ambiente, Università di Udine, Via Cotonificio
108, I-33100 Udine, Italy
| | - Francesco Tarantelli
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, Via Elce di Sotto 8, I-06123 Perugia, Italy
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM), c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8, I-06123 Perugia, Italy
| | - Angela Tuzi
- Dipartimento
di Scienze Chimiche, Università Federico II di Napoli, Via Cintia
4, Complesso Universitario di Monte Sant’Angelo, I-80126 Napoli, Italy
| | - Daniele Zuccaccia
- Dipartimento
di Chimica, Fisica e Ambiente, Università di Udine, Via Cotonificio
108, I-33100 Udine, Italy
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32
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Zhang R, Zhao C, Li X, Zhang Z, Ai X, Chen H, Cao R. A homoleptic, all-alkynyl-stabilized highly luminescent Au8Ag8cluster with a single crystal X-ray structure. Dalton Trans 2016; 45:12772-8. [DOI: 10.1039/c6dt02187e] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An all-alkynyl-stabilized, intensely luminescent Au–Ag cluster was synthesized and characterized with a very high solution quantum yield at room temperature.
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Affiliation(s)
- Rui Zhang
- Department of Chemistry
- Renmin University of China
- Beijing 100872
- China
| | - Chongyang Zhao
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- Key Laboratory of Photochemistry
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
| | - Xiumin Li
- Department of Chemistry
- Renmin University of China
- Beijing 100872
- China
| | - Zongyao Zhang
- Department of Chemistry
- Renmin University of China
- Beijing 100872
- China
| | - Xicheng Ai
- Department of Chemistry
- Renmin University of China
- Beijing 100872
- China
| | - Hui Chen
- Beijing National Laboratory for Molecular Sciences (BNLMS)
- Key Laboratory of Photochemistry
- Institute of Chemistry
- Chinese Academy of Sciences
- Beijing 100190
| | - Rui Cao
- Department of Chemistry
- Renmin University of China
- Beijing 100872
- China
- School of Chemistry and Chemical Engineering
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33
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Sun Y, Chen H. DFT Methods to Study the Reaction Mechanism of Iridium-Catalyzed Hydrogenation of Olefins: Which Functional Should be Chosen? Chemphyschem 2015; 17:119-27. [DOI: 10.1002/cphc.201500817] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2015] [Indexed: 11/09/2022]
Affiliation(s)
- Yihua Sun
- Beijing National Laboratory for Molecular Sciences (BNLMS); CAS Key Laboratory of Photochemistry; Institute of Chemistry; Chinese Academy of Sciences; Beijing 100190 China
| | - Hui Chen
- Beijing National Laboratory for Molecular Sciences (BNLMS); CAS Key Laboratory of Photochemistry; Institute of Chemistry; Chinese Academy of Sciences; Beijing 100190 China
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34
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Li ZY, Hu L, Liu QY, Ning CG, Chen H, He SG, Yao J. CH Bond Activation by Early Transition Metal Carbide Cluster Anion MoC3−. Chemistry 2015; 21:17748-56. [DOI: 10.1002/chem.201503060] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2015] [Indexed: 11/06/2022]
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35
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Hu L, Chen H. Assessment of DFT Methods for Computing Activation Energies of Mo/W-Mediated Reactions. J Chem Theory Comput 2015; 11:4601-14. [DOI: 10.1021/acs.jctc.5b00373] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Lianrui Hu
- Beijing National Laboratory
for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry,
Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Hui Chen
- Beijing National Laboratory
for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry,
Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
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36
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Sperger T, Sanhueza IA, Kalvet I, Schoenebeck F. Computational Studies of Synthetically Relevant Homogeneous Organometallic Catalysis Involving Ni, Pd, Ir, and Rh: An Overview of Commonly Employed DFT Methods and Mechanistic Insights. Chem Rev 2015. [PMID: 26207572 DOI: 10.1021/acs.chemrev.5b00163] [Citation(s) in RCA: 410] [Impact Index Per Article: 45.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Theresa Sperger
- Institute of Organic Chemistry, RWTH Aachen University , Landoltweg 1, 52074 Aachen, Germany
| | - Italo A Sanhueza
- Institute of Organic Chemistry, RWTH Aachen University , Landoltweg 1, 52074 Aachen, Germany.,Laboratory of Organic Chemistry, ETH Zürich , Vladimir-Prelog-Weg 3, 8093 Zürich, Switzerland
| | - Indrek Kalvet
- Institute of Organic Chemistry, RWTH Aachen University , Landoltweg 1, 52074 Aachen, Germany
| | - Franziska Schoenebeck
- Institute of Organic Chemistry, RWTH Aachen University , Landoltweg 1, 52074 Aachen, Germany
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37
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Wong ZX, Lein M. Homogeneous Catalysis with Au
III
: Insights into the Mechanism of the Alkoxylation of Alkynes. Eur J Inorg Chem 2015. [DOI: 10.1002/ejic.201500152] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Zhi Xiang Wong
- School of Chemical and Physical Sciences, Victoria University of Wellington Laby Building, Kelburn Parade, Wellington, New Zealand, http://www.victoria.ac.nz/scps
| | - Matthias Lein
- School of Chemical and Physical Sciences, Victoria University of Wellington Laby Building, Kelburn Parade, Wellington, New Zealand, http://www.victoria.ac.nz/scps
- Centre for Theoretical Chemistry and Physics (CTCP), New Zealand Institute for Advanced Study, Massey University Auckland, Auckland, New Zealand
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38
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Tang H, Huang XR, Yao J, Chen H. Understanding the Effects of Bidentate Directing Groups: A Unified Rationale for sp2 and sp3 C–H Bond Activations. J Org Chem 2015; 80:4672-82. [DOI: 10.1021/acs.joc.5b00580] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Hao Tang
- Beijing
National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory
of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
- Institute
of Theoretical Chemistry, State Key Laboratory of Theoretical and
Computational Chemistry, Jilin University, Changchun, 130023, China
| | - Xu-Ri Huang
- Institute
of Theoretical Chemistry, State Key Laboratory of Theoretical and
Computational Chemistry, Jilin University, Changchun, 130023, China
| | - Jiannian Yao
- Beijing
National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory
of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
| | - Hui Chen
- Beijing
National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory
of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
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39
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Sun Y, Hu L, Chen H. Comparative Assessment of DFT Performances in Ru- and Rh-Promoted σ-Bond Activations. J Chem Theory Comput 2015; 11:1428-38. [PMID: 26574354 DOI: 10.1021/ct5009119] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In this work, the performances of 19 density functional theory (DFT) methods are calibrated comparatively on Ru- and Rh-promoted σ-bond (C-H, O-H, and H-H) activations. DFT calibration reference is generated from explicitly correlated coupled cluster CCSD(T)-F12 calculations, and the 4s4p core-valence correlation effect of the two 4d platinum group transition metals is also included. Generally, the errors of DFT methods for calculating energetics of Ru-/Rh-mediated reactions appear to correlate more with the magnitude of energetics itself than other factors such as metal identity. For activation energy calculations, the best performing functionals for both Ru and Rh systems are MN12SX < CAM-B3LYP < M06-L < MN12L < M06 < ωB97X < B3LYP < LC-ωPBE (in the order of increasing mean unsigned deviations, MUDs, of less than 2 kcal/mol). For reaction energy calculations, best functionals with MUDs less than 2 kcal/mol are PBE0 < CAM-B3LYP ≈ N12SX. The effect of the DFT empirical dispersion correction on the performance of the DFT methods is beneficial for most density functionals tested in this work, reducing their MUDs to different extents. After including empirical dispersion correction, ωB97XD, B3LYP-D3, and CAM-B3LYP-D3 (PBE0-D3, B3LYP-D3, and ωB97XD) are the three best performing DFs for activation energy (reaction energy) calculations, from which B3LYP-D3 and ωB97XD can notably be recommended uniformly for both the reaction energy and reaction barrier calculations. The good performance of B3LYP-D3 in quantitative description of the energetic trends further adds value to B3LYP-D3 and singles this functional out as a reasonable choice in the Ru/Rh-promoted σ-bond activation processes.
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Affiliation(s)
- Yuanyuan Sun
- Beijing National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China
| | - Lianrui Hu
- Beijing National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China
| | - Hui Chen
- Beijing National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences , Beijing 100190, China
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40
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41
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Ciancaleoni G, Belpassi L, Zuccaccia D, Tarantelli F, Belanzoni P. Counterion Effect in the Reaction Mechanism of NHC Gold(I)-Catalyzed Alkoxylation of Alkynes: Computational Insight into Experiment. ACS Catal 2015. [DOI: 10.1021/cs501681f] [Citation(s) in RCA: 85] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Gianluca Ciancaleoni
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM), c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8, I-06123, Perugia, Italy
| | - Leonardo Belpassi
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM), c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8, I-06123, Perugia, Italy
| | - Daniele Zuccaccia
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM), c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8, I-06123, Perugia, Italy
- Dipartimento
di Chimica, Fisica e Ambiente, Università di Udine, Via Cotonificio
108, I-33100 Udine, Italy
| | - Francesco Tarantelli
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM), c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8, I-06123, Perugia, Italy
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, Via Elce di sotto 8, I-06123, Perugia, Italy
| | - Paola Belanzoni
- Istituto
di Scienze e Tecnologie Molecolari del CNR (CNR-ISTM), c/o Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, via Elce di Sotto 8, I-06123, Perugia, Italy
- Dipartimento
di Chimica, Biologia e Biotecnologie, Università degli Studi di Perugia, Via Elce di sotto 8, I-06123, Perugia, Italy
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42
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43
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Hansen A, Bannwarth C, Grimme S, Petrović P, Werlé C, Djukic JP. The thermochemistry of london dispersion-driven transition metal reactions: getting the 'right answer for the right reason'. ChemistryOpen 2014; 3:177-89. [PMID: 25478313 PMCID: PMC4234214 DOI: 10.1002/open.201402017] [Citation(s) in RCA: 68] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2014] [Indexed: 11/10/2022] Open
Abstract
Reliable thermochemical measurements and theoretical predictions for reactions involving large transition metal complexes in which long-range intramolecular London dispersion interactions contribute significantly to their stabilization are still a challenge, particularly for reactions in solution. As an illustrative and chemically important example, two reactions are investigated where a large dipalladium complex is quenched by bulky phosphane ligands (triphenylphosphane and tricyclohexylphosphane). Reaction enthalpies and Gibbs free energies were measured by isotherm titration calorimetry (ITC) and theoretically 'back-corrected' to yield 0 K gas-phase reaction energies (ΔE). It is shown that the Gibbs free solvation energy calculated with continuum models represents the largest source of error in theoretical thermochemistry protocols. The ('back-corrected') experimental reaction energies were used to benchmark (dispersion-corrected) density functional and wave function theory methods. Particularly, we investigated whether the atom-pairwise D3 dispersion correction is also accurate for transition metal chemistry, and how accurately recently developed local coupled-cluster methods describe the important long-range electron correlation contributions. Both, modern dispersion-corrected density functions (e.g., PW6B95-D3(BJ) or B3LYP-NL), as well as the now possible DLPNO-CCSD(T) calculations, are within the 'experimental' gas phase reference value. The remaining uncertainties of 2-3 kcal mol(-1) can be essentially attributed to the solvation models. Hence, the future for accurate theoretical thermochemistry of large transition metal reactions in solution is very promising.
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Affiliation(s)
- Andreas Hansen
- Mulliken Center for Theoretical Chemistry, Institute of Physical & Theoretical Chemistry, University of Bonn Beringstr. 4-6, 53115 Bonn (Germany) E-mail:
| | - Christoph Bannwarth
- Mulliken Center for Theoretical Chemistry, Institute of Physical & Theoretical Chemistry, University of Bonn Beringstr. 4-6, 53115 Bonn (Germany) E-mail:
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Institute of Physical & Theoretical Chemistry, University of Bonn Beringstr. 4-6, 53115 Bonn (Germany) E-mail:
| | - Predrag Petrović
- Strasbourg Institute of Chemistry, CNRS, UMR 7177, Laboratory of Chemistry & Organometallic Systems, University of Strasbourg 4 rue Blaise Pascal, 67000 Strasbourg (France) E-mail:
| | - Christophe Werlé
- Strasbourg Institute of Chemistry, CNRS, UMR 7177, Laboratory of Chemistry & Organometallic Systems, University of Strasbourg 4 rue Blaise Pascal, 67000 Strasbourg (France) E-mail:
| | - Jean-Pierre Djukic
- Strasbourg Institute of Chemistry, CNRS, UMR 7177, Laboratory of Chemistry & Organometallic Systems, University of Strasbourg 4 rue Blaise Pascal, 67000 Strasbourg (France) E-mail:
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44
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Biasiolo L, Trinchillo M, Belanzoni P, Belpassi L, Busico V, Ciancaleoni G, D'Amora A, Macchioni A, Tarantelli F, Zuccaccia D. Unexpected anion effect in the alkoxylation of alkynes catalyzed by N-heterocyclic carbene (NHC) cationic gold complexes. Chemistry 2014; 20:14594-8. [PMID: 25263571 DOI: 10.1002/chem.201404539] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2014] [Indexed: 01/10/2023]
Abstract
The intermolecular alkoxylation of alkynes is the oldest application of cationic gold(I) catalysts; however, no systematic experimental data about the role of the anion are available. In this contribution, the role of the anion in this catalytic reaction as promoted by a N-heterocyclic carbene-based gold catalyst, [(NHC)AuX] (X=BARF(-) , BF4 (-) , OTf(-) , OTs(-) , TFA(-) , or OAc(-) ) is analyzed, through a combined experimental (NMR spectroscopy) and theoretical (DFT calculation) approach. The most important factor seems to be the ability to abstract the proton from the methanol during the nucleophilic attack, and such ability is related to the anion basicity. On the other hand, too high coordination power or basicity of the anion worsens the catalytic performance by preventing alkyne coordination or by forming too much free methoxide in solution, which poisons the catalyst. The intermediate coordinating power and basicity of the OTs(-) anion provides the best compromise to achieve efficient catalysis.
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Affiliation(s)
- Luca Biasiolo
- Dipartimento di Chimica, Fisica e Ambiente, Università di Udine, Via Cotonificio 108, I-33100 Udine (Italy)
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45
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Ciancaleoni G, Rampino S, Zuccaccia D, Tarantelli F, Belanzoni P, Belpassi L. An ab Initio Benchmark and DFT Validation Study on Gold(I)-Catalyzed Hydroamination of Alkynes. J Chem Theory Comput 2014; 10:1021-34. [PMID: 26580180 DOI: 10.1021/ct400980w] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
High level ab initio calculations have been carried out on an archetypal gold(I)-catalyzed reaction: hydroamination of ethyne. We studied up to 12 structures of possible gold(I)-coordinated species modeling different intermediates potentially present in a catalytic cycle for the addition of a protic nucleophile to an alkyne. The benchmark is used to evaluate the performances of some popular density functionals for describing geometries and relative energies of stationary points along the reaction profile. Most functionals (including hybrid or meta-hybrid) give accurate structures but large nonsystematic errors (4-12 kcal/mol) along the reaction energy profile. The double hybrid functional B2PLYP outperforms all considered functionals and compares very nicely with our reference ab initio benchmark energies. Moreover, we present an assessment of the accuracy of commonly used approaches to include relativistic effects, such as relativistic effective potentials and a scalar ZORA Hamiltonian, by a comparison with the results obtained using a relativistic all-electron four-component Dirac-Kohn-Sham method. The contribution of nonscalar relativistic effects in gold(I)-catalyzed reactions, as we investigated here, is expected to be on the order of 1 kcal/mol.
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Affiliation(s)
- Gianluca Ciancaleoni
- Istituto di Scienze e Tecnologie Molecolari del CNR c/o Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia , 06123, Italy
| | - Sergio Rampino
- Istituto di Scienze e Tecnologie Molecolari del CNR c/o Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia , 06123, Italy
| | - Daniele Zuccaccia
- Dipartimento di Chimica, Fisica e Ambiente, Università di Udine , Via Cotonificio 108, I-33100 Udine, Italy
| | - Francesco Tarantelli
- Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia , 06123, Italy
| | - Paola Belanzoni
- Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia , 06123, Italy
| | - Leonardo Belpassi
- Istituto di Scienze e Tecnologie Molecolari del CNR c/o Dipartimento di Chimica, Biologia e Biotecnologie, Università di Perugia , 06123, Italy
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46
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Explicitly correlated coupled cluster benchmarks with realistic-sized ligands for some late-transition metal reactions: basis sets convergence and performance of more approximate methods. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1452-2] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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47
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Tang H, Zhou B, Huang XR, Wang C, Yao J, Chen H. Origins of Selective C(sp2)–H Activation Using Transition Metal Complexes with N,N-Bidentate Directing Groups: A Combined Theoretical–Experimental Study. ACS Catal 2014. [DOI: 10.1021/cs401141k] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Hao Tang
- Beijing
National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory
of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
- Institute
of Theoretical Chemistry, State Key Laboratory of Theoretical and
Computational Chemistry, Jilin University, Changchun, 130023, People’s Republic of China
| | - Bingwei Zhou
- Beijing
National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory
of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
| | - Xu-Ri Huang
- Institute
of Theoretical Chemistry, State Key Laboratory of Theoretical and
Computational Chemistry, Jilin University, Changchun, 130023, People’s Republic of China
| | - Congyang Wang
- Beijing
National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory
of Molecular Recognition and Function, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
| | - Jiannian Yao
- Beijing
National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory
of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
| | - Hui Chen
- Beijing
National Laboratory for Molecular Sciences (BNLMS), CAS Key Laboratory
of Photochemistry, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
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48
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Cao M, She Y, Fu H, Yu Y, Li H, Wang T. Rate-limiting step of the iron porphyrin-catalysed oxidation of cyclohexane to adipic acid by DFT method. MOLECULAR SIMULATION 2014. [DOI: 10.1080/08927022.2013.875171] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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49
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Sun Y, Chen H. Performance of Density Functionals for Activation Energies of Re-Catalyzed Organic Reactions. J Chem Theory Comput 2014; 10:579-88. [DOI: 10.1021/ct4010855] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yihua Sun
- Beijing National
Laboratory
for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry,
Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
| | - Hui Chen
- Beijing National
Laboratory
for Molecular Sciences (BNLMS), CAS Key Laboratory of Photochemistry,
Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
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50
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