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Chan B. Limiting factors in the accuracy of DFT calculation for redox potentials. J Comput Chem 2024; 45:1177-1186. [PMID: 38311976 DOI: 10.1002/jcc.27320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2023] [Revised: 01/17/2024] [Accepted: 01/18/2024] [Indexed: 02/06/2024]
Abstract
In the present study, we have investigated factors affecting the accuracy of computational chemistry calculation of redox potentials, namely the gas-phase ionization energy (IE) and electron affinity (EA), and the continuum solvation effect. In general, double-hybrid density functional theory methods yield IEs and EAs that are on average within ~0.1 eV of our high-level W3X-L benchmark, with the best performing method being DSD-BLYP/ma-def2-QZVPP. For lower-cost methods, the average errors are ~0.2-0.3 eV, with ωB97X-3c being the most accurate (~0.15 eV). For the solvation component, essentially all methods have an average error of ~0.3 eV, which shows the limitation of the continuum solvation model. Curiously, the directly calculated redox potentials show errors of ~0.3 eV for all methods. These errors are notably smaller than what can be expected from error propagation with the two components (IE and EA, and solvation effect). Such a discrepancy can be attributed to the cancellation of errors, with the lowest-cost GFN2-xTB method benefiting the most, and the most accurate ωB97X-3c method benefiting the least. For organometallic species, the redox potentials show large deviations exceeding ~0.5 eV even for DSD-BLYP. The large errors are attributed to those for the gas-phase IEs and EAs, which represents a major barrier to the accurate calculation of redox potentials for such systems.
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Affiliation(s)
- Bun Chan
- Graduate School of Engineering, Nagasaki University, Nagasaki, Japan
- RIKEN Center for Computational Science, Kobe, Japan
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Chan B. DAPD Set of Pd-Containing Diatomic Molecules: Accurate Molecular Properties and the Great Lengths to Obtain Them. J Chem Theory Comput 2023; 19:9260-9268. [PMID: 38096563 DOI: 10.1021/acs.jctc.3c01060] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2023]
Abstract
In the present study, we obtained reliable bond energy, bond length, and zero-point vibrational frequency for a set of diatomic Pd species (the DAPD set). It includes PdH, Pd2, and PdX (X = B, C, N, O, F, Al, Si, P, S, and Cl). Our highest-level protocol (W4X-L) represents scalar and spin-orbit relativistic, valence- and inner-valence correlated, extrapolated CCSDTQ(5) energy. The DAPD set of molecules is challenging for computational chemistry methods in different manners; for Pd2, the spin-orbit contribution to the bond energy is fairly large, whereas for PdC and PdSi, the post-CCSD(T) correlation components are considerable. The diverse range of requirements represents a significant challenge for lower-level methods. While density functional theory (DFT) methods generally yield good agreements for bond lengths and vibrational frequencies, large deviations are found for bond energies. In general, hybrid DFT methods are more accurate than nonhybrid functionals, but the agreement in individual cases varies. This illustrates the critical role that new high-quality reference data would play in the continual development of lower-cost methods.
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Affiliation(s)
- Bun Chan
- Graduate School of Engineering, Nagasaki University, Bunkyo 1-14, Nagasaki 852-8521, Japan
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Chan B, Gill PMW, Kimura M. Assessment of DFT Methods for Transition Metals with the TMC151 Compilation of Data Sets and Comparison with Accuracies for Main-Group Chemistry. J Chem Theory Comput 2019; 15:3610-3622. [PMID: 31150234 DOI: 10.1021/acs.jctc.9b00239] [Citation(s) in RCA: 78] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
In the present study, we have gathered a collection (that we term TMC151) of accurate reference data for transition-metal reactions for the assessment of quantum chemistry methods. It comprises diatomic dissociation energies and reaction energies and barriers for prototypical transition-metal reactions. Our assessment of a diverse range of different types of DFT methods shows that the most accurate functionals include ωB97M-V, ωB97X-V, MN15, and B97M-rV. Notably, they have also been previously validated to be highly robust for main-group chemistry. Nevertheless, even these methods show substantially worse accuracies for transition metals than for main-group chemistry. For less accurate methods, there is not a good correlation between their accuracies for main-group and transition-metal chemistries. Thus, in the development of new DFT, it is important to assess the accuracies for both types of data. In this regard, we have formulated the TMC34 model for efficient assessment of the performance for transition metals, which complements our previously developed MG8 model for main-group chemistry. Together, they provide a cost-effective means for initial assessment of new methodologies.
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Affiliation(s)
- Bun Chan
- Graduate School of Engineering , Nagasaki University , Bunkyo 1-14 , Nagasaki 852-8521 , Japan
| | - Peter M W Gill
- Research School of Chemistry , Australian National University , Canberra , Australian Capital Territory 2601 , Australia
| | - Masanari Kimura
- Graduate School of Engineering , Nagasaki University , Bunkyo 1-14 , Nagasaki 852-8521 , Japan
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Chan B, Kawashima Y, Hirao K. The reHISS Three-Range Exchange Functional with an Optimal Variation of Hartree-Fock and Its Use in the reHISSB-D Density Functional Theory Method. J Comput Chem 2018; 40:29-38. [DOI: 10.1002/jcc.25383] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2018] [Revised: 06/01/2018] [Accepted: 06/01/2018] [Indexed: 11/11/2022]
Affiliation(s)
- Bun Chan
- Graduate School of Engineering; Nagasaki University; Bunkyo 1-14, Nagasaki-shi, Nagasaki 852-8521 Japan
| | - Yukio Kawashima
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-machi, Chuo-ku, Kobe Hyogo 650-0047 Japan
| | - Kimihiko Hirao
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-machi, Chuo-ku, Kobe Hyogo 650-0047 Japan
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Chan B. Formulation of Small Test Sets Using Large Test Sets for Efficient Assessment of Quantum Chemistry Methods. J Chem Theory Comput 2018; 14:4254-4262. [DOI: 10.1021/acs.jctc.8b00514] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Bun Chan
- Graduate School of Engineering, Nagasaki University, Bunkyo 1-14, Nagasaki 852-8521, Japan
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Chan B. Use of Low-Cost Quantum Chemistry Procedures for Geometry Optimization and Vibrational Frequency Calculations: Determination of Frequency Scale Factors and Application to Reactions of Large Systems. J Chem Theory Comput 2017; 13:6052-6060. [DOI: 10.1021/acs.jctc.7b00721] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Bun Chan
- Graduate School of Engineering, Nagasaki University, Bunkyo 1-14, Nagasaki 852-8521, Japan
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Chan B, Kawashima Y, Hirao K. Correlation functional in screened-exchange density functional theory procedures. J Comput Chem 2017; 38:2307-2315. [DOI: 10.1002/jcc.24882] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2017] [Revised: 05/27/2017] [Accepted: 06/23/2017] [Indexed: 02/01/2023]
Affiliation(s)
- Bun Chan
- Graduate School of Engineering; Nagasaki University; Bunkyo 1-14, Nagasaki-shi Nagasaki 852-8521 Japan
| | - Yukio Kawashima
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-machi, Chuo-ku, Kobe Hyogo 650-0047 Japan
| | - Kimihiko Hirao
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-machi, Chuo-ku, Kobe Hyogo 650-0047 Japan
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Chan B. How to computationally calculate thermochemical properties objectively, accurately, and as economically as possible. PURE APPL CHEM 2017. [DOI: 10.1515/pac-2016-1116] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
Abstract
Abstract
We have developed the WnX series of quantum chemistry composite protocols for the computation of highly-accurate thermochemical quantities with advanced efficiency and applicability. The W1X-type methods have a general accuracy of ~3–4 kJ mol−1 and they can currently be applied to systems with ~20–30 atoms. Higher-level methods include W2X, W3X and W3X-L, with the most accurate of these being W3X-L. It can be applied to molecules with ~10–20 atoms and is generally accurate to ~1.5 kJ mol−1. The WnX procedures have opened up new possibilities for computational chemists in pursue of accurate thermochemical values in a highly-productive manner.
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Chan B, Karton A, Raghavachari K, Radom L. Restricted-Open-Shell G4(MP2)-Type Procedures. J Phys Chem A 2016; 120:9299-9304. [DOI: 10.1021/acs.jpca.6b09361] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Bun Chan
- Graduate
School of Engineering, Nagasaki University, Bunkyo 1-14, Nagasaki 852-8521, Japan
| | - Amir Karton
- School
of Chemistry and Biochemistry, The University of Western Australia, Perth, WA 6009, Australia
| | - Krishnan Raghavachari
- Department
of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Leo Radom
- School
of Chemistry, University of Sydney, Sydney, NSW 2006, Australia
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Chan B, Goerigk L, Radom L. On the inclusion of post-MP2 contributions to double-Hybrid density functionals. J Comput Chem 2015; 37:183-93. [DOI: 10.1002/jcc.23972] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2015] [Revised: 05/19/2015] [Accepted: 05/21/2015] [Indexed: 01/18/2023]
Affiliation(s)
- Bun Chan
- School of Chemistry; The University of Sydney and Centre of Excellence for Free Radical Chemistry and Biotechnology; Sydney New South Wales 2006 Australia
| | - Lars Goerigk
- School of Chemistry; The University of Melbourne; Parkville Victoria 3010 Australia
| | - Leo Radom
- School of Chemistry; The University of Sydney and Centre of Excellence for Free Radical Chemistry and Biotechnology; Sydney New South Wales 2006 Australia
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Chan B, Song JW, Kawashima Y, Hirao K. Toward the complete range separation of non-hybrid exchange-correlation functional. J Comput Chem 2015; 36:871-7. [DOI: 10.1002/jcc.23867] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Revised: 02/04/2015] [Accepted: 02/05/2015] [Indexed: 11/11/2022]
Affiliation(s)
- Bun Chan
- School of Chemistry, University of Sydney; New South Wales 2006 Australia
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-machi, Chuo-ku Kobe Hyogo 650-0047 Japan
| | - Jong-Won Song
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-machi, Chuo-ku Kobe Hyogo 650-0047 Japan
| | - Yukio Kawashima
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-machi, Chuo-ku Kobe Hyogo 650-0047 Japan
| | - Kimihiko Hirao
- RIKEN Advanced Institute for Computational Science; 7-1-26 Minatojima-minami-machi, Chuo-ku Kobe Hyogo 650-0047 Japan
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Chan B, Gilbert ATB, Gill PMW, Radom L. Performance of Density Functional Theory Procedures for the Calculation of Proton-Exchange Barriers: Unusual Behavior of M06-Type Functionals. J Chem Theory Comput 2014; 10:3777-83. [DOI: 10.1021/ct500506t] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Bun Chan
- School
of Chemistry, University of Sydney, Sydney, NSW 2006, Australia
| | | | | | - Leo Radom
- School
of Chemistry, University of Sydney, Sydney, NSW 2006, Australia
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Mardirossian N, Lambrecht DS, McCaslin L, Xantheas SS, Head-Gordon M. The Performance of Density Functionals for Sulfate–Water Clusters. J Chem Theory Comput 2013; 9:1368-80. [DOI: 10.1021/ct4000235] [Citation(s) in RCA: 65] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Narbe Mardirossian
- Department of Chemistry, University
of California, Berkeley, California, United States
| | - Daniel S. Lambrecht
- Department of Chemistry, University
of Pittsburgh, Pittsburgh, Pennsylvania, United States
| | - Laura McCaslin
- Department of Chemistry and Biochemistry,
University of Texas—Austin, Texas, United States
| | - Sotiris S. Xantheas
- Physical Sciences Division,
Pacific Northwest National Laboratory, Richland, Washington, United
States
| | - Martin Head-Gordon
- Department of Chemistry, University
of California, Berkeley, California, United States
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