1
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Oh J, Zheng SL, Carsch KM, Latendresse TP, Casaday CE, Campbell BM, Betley TA. An Open-Shell Fe IV Nitrido. J Am Chem Soc 2025; 147:3174-3184. [PMID: 39829124 DOI: 10.1021/jacs.4c12588] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2025]
Abstract
We report the photogeneration and characterization of an open-shell, terminal iron nitrido (EmL)Fe(N) using a sterically encumbered dipyrrin ligand environment. The Fe-N distance in the solid-state, zero-field 57Fe Mössbauer spectrum, and computational analysis are consistent with a triplet electronic ground state of the iron nitrido. Notably, the attenuation of Fe-N multiple bond character through occupying π*Fe-N enables (i) primary C(sp3)-H amination, (ii) H2 cleavage, (iii) aromatic C-C cleavage, and (iv) photocatalytic N-atom transfer reactivity. These modes of reactivity have not previously been observed in low-spin Fe(N) analogues.
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Affiliation(s)
- Jeewhan Oh
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, United States
| | - Shao-Liang Zheng
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, United States
| | - Kurtis M Carsch
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, United States
| | - Trevor P Latendresse
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, United States
| | - Claire E Casaday
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, United States
| | - Brandon M Campbell
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, United States
| | - Theodore A Betley
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge, Massachusetts 02138, United States
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2
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von Rhein N, Krewald V. The temperature dependence of Mössbauer quadrupole splitting values: a quantum chemical analysis. Chem Commun (Camb) 2025. [PMID: 39812463 DOI: 10.1039/d4cc03943b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
Abstract
The two key parameters extracted from Mössbauer spectroscopy, isomer shift and quadrupole splitting, have well-known temperature dependencies. While the behavior of the values following a temperature change has long been known, its microscopic origins are less clear. For quantum chemical calculations - formally representing the situation at 0 K - significant discrepancies with the experiment can arise, especially at elevated temperatures. Herein, we introduce an ensemble-based approach for capturing the temperature dependence of the quadrupole splitting. Our method is exemplified with [Fe(TPP)(2-MeHIm)], an iron(II) high spin system. We rationalise the temperature dependence by changes in the shape of the charge distribution due to vibrational distortion. By using a normal mode fitting approach, we isolated collective nuclear movements associated with the change in the quadrupole splitting.
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Affiliation(s)
- Niklas von Rhein
- Department of Chemistry, Quantum Chemistry, TU Darmstadt, Peter-Grünberg-Str. 4, 64287 Darmstadt, Germany.
| | - Vera Krewald
- Department of Chemistry, Quantum Chemistry, TU Darmstadt, Peter-Grünberg-Str. 4, 64287 Darmstadt, Germany.
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3
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Jana RD, Das A, Samanta R, Banerjee S, Paul S, Paine TK. Stereoelectronic Tuning of Bioinspired Nonheme Iron(IV)-Oxo Species by Amide Groups in Primary and Secondary Coordination Spheres for Selective Oxygenation Reactions. Inorg Chem 2024; 63:21042-21058. [PMID: 39433290 DOI: 10.1021/acs.inorgchem.4c03155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2024]
Abstract
Two mononuclear iron(II) complexes, [(6-amide2-BPMEN)FeII](OTf)2 (1) and [(6-amide-Me-BPMEN)FeII(OTf)](OTf) (2), supported by two BPMEN-derived (BPMEN = N1,N2-dimethyl-N1,N2-bis(pyridine-2-yl-methyl)ethane-1,2-diamine) ligands bearing one or two amide functionalities have been isolated to study their reactivity in the oxygenation of C-H and C═C bonds using isopropyl 2-iodoxybenzoate (iPr-IBX ester) as the oxidant. Both 1 and 2 contain six-coordinate high-spin iron(II) centers in the solid state and in solution. The 6-amide2-BPMEN ligand stabilizes an S = 1 iron(IV)-oxo intermediate, [(6-amide2-BPMEN)FeIV(O)]2+ (1A). The oxidant (1A) oxygenates the C-H and C═C bonds with a high selectivity. Oxidant 1A, upon treatment with 2,6-lutidine, is transformed into another oxidant [{(6-amide2-BPMEN)-(H)}FeIV(O)]+ (1B) through deprotonation of an amide group, resulting in a stronger equatorial ligand field and subsequent stabilization of the triplet ground state. In contrast, no iron-oxo species could be observed from complex 2 and [(6-Me2-BPMEN)FeII(OTf)2] (3) under similar experimental conditions. The iron(IV)-oxo oxidant 1A shows the highest A/K selectivity in cyclohexane oxidation and 3°/2° selectivity in adamantane oxidation reported for any synthetic nonheme iron(IV)-oxo complexes. Theoretical investigation reveals that the hydrogen bonding interaction between the -NH group of the noncoordinating amide group and Fe═O core smears out the equatorial charge density, reducing the triplet-quintet splitting, and thus helping complex 1A to achieve better reactivity.
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Affiliation(s)
- Rahul Dev Jana
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, Jadavpur 700032, India
| | - Abhishek Das
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, Jadavpur 700032, India
| | - Rajib Samanta
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, Jadavpur 700032, India
| | - Sridhar Banerjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, Jadavpur 700032, India
| | - Satadal Paul
- Department of Chemistry, Bangabasi Morning College, 19 Rajkumar Chakraborty Sarani, Kolkata 700009, India
| | - Tapan Kanti Paine
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S. C. Mullick Road, Kolkata, Jadavpur 700032, India
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4
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Santra G, Neese F, Pantazis DA. Extensive reference set and refined computational protocol for calculations of 57Fe Mössbauer parameters. Phys Chem Chem Phys 2024; 26:23322-23334. [PMID: 39210741 DOI: 10.1039/d4cp00431k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
Mössbauer spectroscopy is a powerful technique for probing the local electronic structure of iron compounds, because it reports in an element-selective manner on both the oxidation state and coordination environment of the Fe ion. Computational prediction of the two main Mössbauer parameters, isomer shift (δ) and quadrupole splitting (ΔEQ), has long been targeted by quantum chemical studies, and useful protocols based on density functional theory have been proposed. Here we present an extensive curated reference set of Fe compounds that is considerably larger and more diverse than literature precedents. We make a distinction between low-temperature and high-temperature experimental subgroups. This set is employed for optimizing a refined computational protocol utilizing the scalar version of the exact 2-component (X2C) Hamiltonian with the finite nucleus approximation. Attention is devoted to having an accurate and flexible all-electron basis set for Fe. We assess the performance of several DFT methods that cover all representative families and rungs of functionals and find that hybrid functionals with ca. 25-30% exact exchange offer the best accuracy for isomer shifts. The work establishes a refined general protocol of wide applicability that achieves good performance for the prediction of isomer shifts in a wider variety of systems than before, but the limitations of DFT for quadrupole splittings are also highlighted. Finally, comparison of calculated values with high-temperature experimental results shows that the use of an empirical correction factor is required to account for the second-order Doppler shift and to achieve the same quality of correlation as with the low-temperature data.
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Affiliation(s)
- Golokesh Santra
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany.
| | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany.
| | - Dimitrios A Pantazis
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, 45470 Mülheim an der Ruhr, Germany.
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5
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Li W, Filatov M, Zou W. Calculation of electric field gradients with the exact two-component (X2C) quasi-relativistic method and its local approximations. Phys Chem Chem Phys 2024; 26:18333-18342. [PMID: 38912554 DOI: 10.1039/d4cp01567c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/25/2024]
Abstract
When calculating electric field gradients (EFGs), relativistic and electron correlation effects are crucial for obtaining accurate results, and the commonly used density functional methods produce unsatisfactory results, especially for heavy elements and/or strongly correlated systems. In this work, a stand-alone program is presented, which enables calculation of EFGs from the molecular orbitals supplied by an external high accuracy quantum chemical calculation and includes relativistic effects through the exact two-component (X2C) formalism and efficient local approximations to it. Application to BiN and BiP molecules shows that a high precision can be achieved in the calculation of nuclear quadrupole coupling constants of 209Bi by combining advanced ab initio methods with the X2C approach. For seventeen iron compounds, the Mössbauer nuclear quadrupole splittings (NQS) of 57Fe calculated using a double-hybrid functional method are in very good agreement with the experimental values. It is shown that, for strongly correlated molecules, the double-hybrid functionals are much more accurate than the commonly used hybrid functionals. The computer program developed in this study furnishes a useful utility for obtaining EFGs and related nuclear properties with high accuracy.
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Affiliation(s)
- Wenxin Li
- Institute of Modern Physics, Northwest University, and Shaanxi Key Laboratory for Theoretical Physics Frontiers, Xi'an, Shaanxi 710127, P. R. China.
| | - Michael Filatov
- Center for Multidimensional Carbon Materials, Institute for Basic Science (IBS), Ulsan, 44919, Republic of Korea.
| | - Wenli Zou
- Institute of Modern Physics, Northwest University, and Shaanxi Key Laboratory for Theoretical Physics Frontiers, Xi'an, Shaanxi 710127, P. R. China.
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6
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Manganaro NS, Ambos SD, DeCapua M, Thiel SD, Mitchell WE, Liu Z, Zhang D, Nguyen PQH, Lavina B, Alp EE, Yan J, Walsh JPS. High-Pressure Polymorphism in Silver Ferrite Delafossite, AgFeO 2. Inorg Chem 2024; 63:9763-9770. [PMID: 38739043 DOI: 10.1021/acs.inorgchem.3c04631] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/14/2024]
Abstract
The delafossites are a class of layered metal oxides that are notable for being able to exhibit optical transparency alongside an in-plane electrical conductivity, making them promising platforms for the development of transparent conductive oxides. Pressure-induced polymorphism offers a direct method for altering the electrical and optical properties in this class, and although the copper delafossites have been studied extensively under pressure, the silver delafossites remain only partially studied. We report two new high-pressure polymorphs of silver ferrite delafossite, AgFeO2, that are stabilized above ∼6 and ∼14 GPa. In situ X-ray diffraction and vibrational spectroscopy measurements are used to examine the structural changes across the two phase transitions. The high-pressure structure between 6 and 14 GPa is assigned as a monoclinic C2/c structure that is analogous to the high-pressure phase reported for AgGaO2. Nuclear resonant forward scattering reveals no change in the spin state or valence state at the Fe3+ site up to 15.3(5) GPa.
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Affiliation(s)
- Nicholas S Manganaro
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Scott D Ambos
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Matthew DeCapua
- Department of Physics, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Scott D Thiel
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Wyatt E Mitchell
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - Zhenxian Liu
- Department of Physics, University of Illinois Chicago, Chicago, Illinois 60607, United States
| | - Dongzhou Zhang
- GSECARS, University of Chicago, 9700 S Cass Avenue, Argonne, Lemont, Illinois 60439, United States
| | - Phuong Q H Nguyen
- GSECARS, University of Chicago, 9700 S Cass Avenue, Argonne, Lemont, Illinois 60439, United States
| | - Barbara Lavina
- GSECARS, University of Chicago, 9700 S Cass Avenue, Argonne, Lemont, Illinois 60439, United States
- Advanced Photon Source, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, Illinois 60439, United States
| | - Esen Ercan Alp
- Advanced Photon Source, Argonne National Laboratory, 9700 South Cass Avenue, Lemont, Illinois 60439, United States
| | - Jun Yan
- Department of Physics, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
| | - James P S Walsh
- Department of Chemistry, University of Massachusetts Amherst, Amherst, Massachusetts 01003, United States
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7
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Gallenkamp C, Kramm UI, Krewald V. FeN 4 Environments upon Reduction: A Computational Analysis of Spin States, Spectroscopic Properties, and Active Species. JACS AU 2024; 4:940-950. [PMID: 38559729 PMCID: PMC10976608 DOI: 10.1021/jacsau.3c00714] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 01/08/2024] [Accepted: 01/09/2024] [Indexed: 04/04/2024]
Abstract
FeN4 motifs, found, for instance, in bioinorganic chemistry as heme-type cofactors, play a crucial role in man-made FeNC catalysts for the oxygen reduction reaction. Such single-atom catalysts are a potential alternative to platinum-based catalysts in fuel cells. Since FeNC catalysts are prepared via pyrolysis, the resulting materials are amorphous and contain side phases and impurities. Therefore, the geometric and electronic nature of the catalytically active FeN4 site remains to be clarified. To further understand the behavior of FeN4 centers in electrochemistry and their expected spectroscopic behavior upon reduction, we investigate two FeN4 environments (pyrrolic and pyridinic). These are represented by the model complexes [Fe(TPP)Cl] and [Fe(phen2N2)Cl], where TPP = tetraphenylporphyrin and phen = 1,10-phenanthroline. We predict their Mössbauer, UV-vis, and NRV spectral data using density functional theory as windows into their electronic structure differences. By varying the axial ligand, we further show how well small chemical changes in both complexes can be discerned. We find that the differences in ligand field strength in pyrrolic and pyridinic coordination result in different spin ground states, which in turn leads to distinct Mössbauer spectroscopic properties. As a result, pyrrolic nitrogen donors with a weaker ligand field are predicted to show more pronounced spectroscopic differences under in situ and operando conditions, while pyridinic nitrogen donors are expected to show less pronounced spectroscopic changes upon reduction and/or ligand loss. We therefore suggest that a weaker ligand field leads to better detectability of catalytic intermediates in in situ and operando experiments.
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Affiliation(s)
- Charlotte Gallenkamp
- Theoretische
Chemie, Technische Universität Darmstadt, Peter-Grünberg-Str. 4, 64287 Darmstadt, Germany
| | - Ulrike I. Kramm
- Anorganische
Chemie, Technische Universität Darmstadt, Otto-Berndt-Str. 3, 64287 Darmstadt, Germany
| | - Vera Krewald
- Theoretische
Chemie, Technische Universität Darmstadt, Peter-Grünberg-Str. 4, 64287 Darmstadt, Germany
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8
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Li W, Li X, Robeyns K, Wolff M, Kfoury J, Oláh J, Herchel R, Demeshko S, Meyer F, Garcia Y. Spin-state versatility in FeII4L 6 supramolecular cages with a pyridyl-hydrazone ligand scaffold modulated by solvents and counter anions. Dalton Trans 2024; 53:1449-1459. [PMID: 37909312 DOI: 10.1039/d3dt02474a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2023]
Abstract
Discrete spin crossover (SCO) tetranuclear cages are a unique class of materials that have potential use in next-generation molecular recognition and sensing. In this work, two new edge-bridged SCO FeII4L6 (L = 2,7-bis(((E)-pyridin-2-ylmethylene)amino)benzo[lmn] [3,8]phenanthroline-1,3,6,8(2H,7H)-tetraone) supramolecular cages with different counter anions: ClO4- (2) and CF3SO3- (3) were constructed via subcomponent self-assembly to investigate both solvent and anion influences on their magnetic properties and compare them to cage 1 with a BF4- anion. Pyridyl-hydrazone bidentate ligand scaffolds were employed to replace the 'classical' imidazole/thiazolyl-imine coordination units to induce SCO behaviour in these cages. 2 and 3 were structurally characterized by single-crystal X-ray diffraction analysis and electrospray ionization time-of-flight mass spectrometry. Magnetic susceptibilities of 1-3 and 1-3·desolvated indicate that the solvents' presence is in favor of the low-spin (LS) state. While different counter anions in 1-3·desolvated affect the spin-state configurations of the four FeII metal centers. According to the 57Fe Mössbauer spectral analysis, the spin-state distributions in 1-3 at 80 K are [2 high-spin (HS)-2LS], [1HS-3LS] and [2HS-2LS], respectively and density functional theory calculations were employed to investigate the reasons. These findings provide insights to regulate the spin-state versatility of SCO FeII cage systems in the solid state.
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Affiliation(s)
- Weiyang Li
- Institute of Condensed Matter and Nanosciences, Molecular Chemistry, Materials and Catalysis (IMCN/MOST), Université catholique de Louvain, Place Louis Pasteur 1, 1348 Louvain-la-Neuve, Belgium.
| | - Xiaochun Li
- Institute of Condensed Matter and Nanosciences, Molecular Chemistry, Materials and Catalysis (IMCN/MOST), Université catholique de Louvain, Place Louis Pasteur 1, 1348 Louvain-la-Neuve, Belgium.
| | - Koen Robeyns
- Institute of Condensed Matter and Nanosciences, Molecular Chemistry, Materials and Catalysis (IMCN/MOST), Université catholique de Louvain, Place Louis Pasteur 1, 1348 Louvain-la-Neuve, Belgium.
| | - Mariusz Wolff
- Institut für Chemische Katalyse, Fakultät für Chemie, Universität Wien, Währinger Strasse 38, 1090 Wien, Austria
| | - Joseph Kfoury
- Department of Inorganic and Analytical Chemistry, Budapest University of Technology and Economics, H-1111 Szent Gellért tér 4, Budapest, Hungary
| | - Julianna Oláh
- Department of Inorganic and Analytical Chemistry, Budapest University of Technology and Economics, H-1111 Szent Gellért tér 4, Budapest, Hungary
| | - Radovan Herchel
- Department of Inorganic Chemistry, Faculty of Science, Palacký University, 17. listopadu 12, 77146 Olomouc, Czech Republic
| | - Serhiy Demeshko
- Institut für Anorganische Chemie, Universität Göttingen, Tammannstrasse 4, D-37077 Göttingen, Germany
| | - Franc Meyer
- Institut für Anorganische Chemie, Universität Göttingen, Tammannstrasse 4, D-37077 Göttingen, Germany
| | - Yann Garcia
- Institute of Condensed Matter and Nanosciences, Molecular Chemistry, Materials and Catalysis (IMCN/MOST), Université catholique de Louvain, Place Louis Pasteur 1, 1348 Louvain-la-Neuve, Belgium.
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9
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Radoń M. Benchmarks for transition metal spin-state energetics: why and how to employ experimental reference data? Phys Chem Chem Phys 2023; 25:30800-30820. [PMID: 37938035 DOI: 10.1039/d3cp03537a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2023]
Abstract
Accurate prediction of energy differences between alternative spin states of transition metal complexes is essential in computational (bio)inorganic chemistry-for example, in characterization of spin crossover materials and in the theoretical modeling of open-shell reaction mechanisms-but it remains one of the most compelling problems for quantum chemistry methods. A part of this challenge is to obtain reliable reference data for benchmark studies, as even the highest-level applicable methods are known to give divergent results. This Perspective discusses two possible approaches to method benchmarking for spin-state energetics: using either theoretically computed or experiment-derived reference data. With the focus on the latter approach, an extensive general review is provided for the available experimental data of spin-state energetics and their interpretations in the context of benchmark studies, targeting the possibility of back-correcting the vibrational effects and the influence of solvents or crystalline environments. With a growing amount of experience, these effects can be now not only qualitatively understood, but also quantitatively modeled, providing the way to derive nearly chemically accurate estimates of the electronic spin-state gaps to be used as benchmarks and advancing our understanding of the phenomena related to spin states in condensed phases.
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Affiliation(s)
- Mariusz Radoń
- Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Krakow, Poland.
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10
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Corcho-Valdes AL, Ponce de Leon-Cabrera J, Padron-Ramirez I, Chao-Mujica FJ, Lebed E, Gutierrez-Quintanilla A, Desdin-Garcia LF, Voloshin Y, Antuch M. Precise Fingerprint Determination of Vibrational Infrared Spectra in a Series of Co(II) Clathrochelates through Experimental and Theoretical Analyses. J Phys Chem A 2023; 127:9419-9429. [PMID: 37935045 DOI: 10.1021/acs.jpca.3c04161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2023]
Abstract
The energetic demands of modern society for clean energy vectors, such as H2, have caused a surge in research associated with homogeneous and immobilized electrocatalysts that may replace Pt. In particular, clathrochelates have shown excellent electrocatalytic properties for the hydrogen evolution reaction (HER). However, the actual mechanism for the HER catalyzed by these d-metal complexes remains an open debate, which may be addressed via Operando spectroelectrochemistry. The prediction of electrochemical properties via density functional theory (DFT) needs access to thermodynamic functions, which are only available after Hessian calculations. Unfortunately, there is a notable lack in the current literature regarding the precise evaluation of vibrational spectra of such complexes, given their structural complexity and the associated tangled IR spectra. In this work, we have performed a detailed theoretical and experimental analysis in a family of Co(II) clathrochelates, in order to establish univocally their IR pattern, and also the calculation methodology that is adequate for such predictions. In summary, we have observed the presence of multiple common bands shared by this clathrochelate family, using the B3LYP functional, the LANL2DZ basis, and effective core potentials (ECP) for heavy atoms. The most important issue addressed in this article was therefore related to the detailed assignment of the fingerprint associated with cobalt(II) clathrochelates, which is a challenging endeavor due to the crowded nature of their spectra.
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Affiliation(s)
- Angel Luis Corcho-Valdes
- Centro de Aplicaciones Tecnologicas y Desarrollo Nuclear (CEADEN), No. 502, Calle 30 y 5ta Ave., Miramar, C.P. 11300 La Habana, Cuba
| | - Josue Ponce de Leon-Cabrera
- Centro de Aplicaciones Tecnologicas y Desarrollo Nuclear (CEADEN), No. 502, Calle 30 y 5ta Ave., Miramar, C.P. 11300 La Habana, Cuba
| | - Ivan Padron-Ramirez
- Centro de Aplicaciones Tecnologicas y Desarrollo Nuclear (CEADEN), No. 502, Calle 30 y 5ta Ave., Miramar, C.P. 11300 La Habana, Cuba
| | - Frank Justo Chao-Mujica
- Centro de Aplicaciones Tecnologicas y Desarrollo Nuclear (CEADEN), No. 502, Calle 30 y 5ta Ave., Miramar, C.P. 11300 La Habana, Cuba
| | - Ekaterina Lebed
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, 28-1 Vavilova st., 119334 Moscow, Russia
- Kurnakov Institute of General and Inorganic Chemistry of the Russian Academy of Sciences, 31 Leninsky pr., 119991 Moscow, Russia
| | | | - Luis Felipe Desdin-Garcia
- Centro de Aplicaciones Tecnologicas y Desarrollo Nuclear (CEADEN), No. 502, Calle 30 y 5ta Ave., Miramar, C.P. 11300 La Habana, Cuba
| | - Yan Voloshin
- Nesmeyanov Institute of Organoelement Compounds of the Russian Academy of Sciences, 28-1 Vavilova st., 119334 Moscow, Russia
- Kurnakov Institute of General and Inorganic Chemistry of the Russian Academy of Sciences, 31 Leninsky pr., 119991 Moscow, Russia
| | - Manuel Antuch
- Centro de Aplicaciones Tecnologicas y Desarrollo Nuclear (CEADEN), No. 502, Calle 30 y 5ta Ave., Miramar, C.P. 11300 La Habana, Cuba
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11
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Ullah S, Jensen S, Liu Y, Tan K, Drake H, Zhang G, Huang J, Klimeš J, Driscoll DM, Hermann RP, Zhou HC, Li J, Thonhauser T. Magnetically Induced Binary Ferrocene with Oxidized Iron. J Am Chem Soc 2023; 145:18029-18035. [PMID: 37530761 DOI: 10.1021/jacs.3c05754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/03/2023]
Abstract
Ferrocene is perhaps the most popular and well-studied organometallic molecule, but our understanding of its structure and electronic properties has not changed for more than 70 years. In particular, all previous attempts of chemically oxidizing pure ferrocene by binding directly to the iron center have been unsuccessful, and no significant change in structure or magnetism has been reported. Using a metal organic framework host material, we were able to fundamentally change the electronic and magnetic structure of ferrocene to take on a never-before observed physically stretched/bent high-spin Fe(II) state, which readily accepts O2 from air, chemically oxidizing the iron from Fe(II) to Fe(III). We also show that the binding of oxygen is reversible through temperature swing experiments. Our analysis is based on combining Mößbauer spectroscopy, extended X-ray absorption fine structure, in situ infrared, SQUID, thermal gravimetric analysis, and energy dispersive X-ray fluorescence spectroscopy measurements with ab initio modeling.
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Affiliation(s)
- Saif Ullah
- Department of Physics and Center for Functional Materials, Wake Forest University, Winston-Salem, North Carolina 27109, United States
| | - Stephanie Jensen
- Department of Physics and Center for Functional Materials, Wake Forest University, Winston-Salem, North Carolina 27109, United States
| | - Yanyao Liu
- Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854, United States
| | - Kui Tan
- Department of Chemistry, University of North Texas, Denton, Texas 76201, United States
| | - Hannah Drake
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Guoyu Zhang
- Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854, United States
| | - Junjie Huang
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Jiří Klimeš
- Department of Chemical Physics and Optics, Charles University, 12116 Prague, Czech Republic
| | - Darren M Driscoll
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
| | - Raphaël P Hermann
- Materials Science and Technology Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
| | - Hong-Cai Zhou
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Jing Li
- Department of Chemistry and Chemical Biology, Rutgers University, Piscataway, New Jersey 08854, United States
| | - Timo Thonhauser
- Department of Physics and Center for Functional Materials, Wake Forest University, Winston-Salem, North Carolina 27109, United States
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12
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Ren W, Schulz CE, Shroyer MH, Xu W, Xi S, An P, Guo W, Li J. Electronic Configurations and the Effect of Peripheral Substituents of (Nitrosyl)iron Corroles. Inorg Chem 2022; 61:20385-20396. [DOI: 10.1021/acs.inorgchem.2c03026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Wanjie Ren
- College of Materials Science and Optoelectronic Technology and Chinese Academy of Sciences Center for Excellence in Topological Quantum Computation, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing101408, P. R. China
| | - Charles E. Schulz
- Department of Physics and Astronomy, Knox College, Galesburg, Illinois61401, United States
| | - Mark H. Shroyer
- Department of Physics and Astronomy, Knox College, Galesburg, Illinois61401, United States
| | - Wei Xu
- Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences (CAS), Beijing100049, P. R. China
- RICMASS, Rome International Center for Materials Science Superstripes, Via dei Sabelli 119A, Rome00185, Italy
| | - Shibo Xi
- Institute of Chemical and Engineering Sciences, Agency for Science, Technology and Research, 1 Pesek Road, Jurong Island, Singapore627833, Singapore
| | - Pengfei An
- Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences (CAS), Beijing100049, P. R. China
| | - Wenping Guo
- National Energy Center for Coal to Clean Fuels, Synfuels China Co., Ltd., Huairou District, Beijing101400, P. R. China
| | - Jianfeng Li
- College of Materials Science and Optoelectronic Technology and Chinese Academy of Sciences Center for Excellence in Topological Quantum Computation, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing101408, P. R. China
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13
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Béres K, Homonnay Z, Kvitek L, Dürvanger Z, Kubikova M, Harmat V, Szilágyi F, Czégény Z, Németh P, Bereczki L, Petruševski VM, Pápai M, Farkas A, Kótai L. Thermally Induced Solid-Phase Quasi-Intramolecular Redox Reactions of [Hexakis(urea- O)iron(III)] Permanganate: An Easy Reaction Route to Prepare Potential (Fe,Mn)O x Catalysts for CO 2 Hydrogenation. Inorg Chem 2022; 61:14403-14418. [PMID: 36044722 PMCID: PMC9477215 DOI: 10.1021/acs.inorgchem.2c02265] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Indexed: 11/29/2022]
Abstract
Research on new reaction routes and precursors to prepare catalysts for CO2 hydrogenation has enormous importance. Here, we report on the preparation of the permanganate salt of the urea-coordinated iron(III), [hexakis(urea-O)iron(III)]permanganate ([Fe(urea-O)6](MnO4)3) via an affordable synthesis route and preliminarily demonstrate the catalytic activity of its (Fe,Mn)Ox thermal decomposition products in CO2 hydrogenation. [Fe(urea-O)6](MnO4)3 contains O-coordinated urea ligands in octahedral propeller-like arrangement around the Fe3+ cation. There are extended hydrogen bond interactions between the permanganate ions and the hydrogen atoms of the urea ligands. These hydrogen bonds serve as reaction centers and have unique roles in the solid-phase quasi-intramolecular redox reaction of the urea ligand and the permanganate anion below the temperature of ligand loss of the complex cation. The decomposition mechanism of the urea ligand (ammonia elimination with the formation of isocyanuric acid and biuret) has been clarified. In an inert atmosphere, the final thermal decomposition product was manganese-containing wuestite, (Fe,Mn)O, at 800 °C, whereas in ambient air, two types of bixbyite (Fe,Mn)2O3 as well as jacobsite (Fe,Mn)T-4(Fe,Mn)OC-62O4), with overall Fe to Mn stoichiometry of 1:3, were formed. These final products were obtained regardless of the different atmospheres applied during thermal treatments up to 350 °C. Disordered bixbyite formed first with inhomogeneous Fe and Mn distribution and double-size supercell and then transformed gradually into common bixbyite with regular structure (and with 1:3 Fe to Mn ratio) upon increasing the temperature and heating time. The (Fe,Mn)Ox intermediates formed under various conditions showed catalytic effect in the CO2 hydrogenation reaction with <57.6% CO2 conversions and <39.3% hydrocarbon yields. As a mild solid-phase oxidant, hexakis(urea-O)iron(III) permanganate, was found to be selective in the transformation of (un)substituted benzylic alcohols into benzaldehydes and benzonitriles.
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Affiliation(s)
- Kende
Attila Béres
- Institute
of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Magyar Tudósok krt. 2, H-1117 Budapest, Hungary
- György
Hevesy PhD School of Chemistry, Institute of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter
s. 1/A, H-1117 Budapest, Hungary
| | - Zoltán Homonnay
- György
Hevesy PhD School of Chemistry, Institute of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter
s. 1/A, H-1117 Budapest, Hungary
| | - Libor Kvitek
- Faculty
of Science, Department of Physical Chemistry, Palacky University Olomouc, 17. Listopadu 12, Olomouc 77146, Czech Republic
| | - Zsolt Dürvanger
- Structural
Chemistry and Biology Laboratory, Institute of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter
s. 1/A, H-1117 Budapest, Hungary
| | - Martina Kubikova
- Faculty
of Science, Department of Physical Chemistry, Palacky University Olomouc, 17. Listopadu 12, Olomouc 77146, Czech Republic
| | - Veronika Harmat
- Structural
Chemistry and Biology Laboratory, Institute of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter
s. 1/A, H-1117 Budapest, Hungary
- ELKH-ELTE
Protein eModelling Research Group, Pázmány Péter s. 1/A, H-1117 Budapest, Hungary
| | - Fanni Szilágyi
- Institute
of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Magyar Tudósok krt. 2, H-1117 Budapest, Hungary
- Bay
Zoltan
Ltd. for Applied Research, Production Division (BAY-PROD), 1 Kondorfa, H-1116 Budapest, Hungary
| | - Zsuzsanna Czégény
- Institute
of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Magyar Tudósok krt. 2, H-1117 Budapest, Hungary
| | - Péter Németh
- Institute
for Geological and Geochemical Research, Research Centre for Astronomy and Earth Sciences, ELKH, Budaörsi street 45, H-1112 Budapest, Hungary
| | - Laura Bereczki
- Institute
of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Magyar Tudósok krt. 2, H-1117 Budapest, Hungary
| | - Vladimir M. Petruševski
- Faculty
of Natural Sciences and Mathematics, Ss.
Cyril and Methodius University, Skopje MK-1000, North
Macedonia
| | - Mátyás Pápai
- Wigner
Research Centre for Physics, H-1525 Budapest, P.O. Box
49, Hungary
| | - Attila Farkas
- Department
of Organic Chemistry, Budapest University
of Technology and Economics, Műegyetem rakpart 3, H-1111 Budapest, Hungary
| | - László Kótai
- Institute
of Materials and Environmental Chemistry, Research Centre for Natural Sciences, Magyar Tudósok krt. 2, H-1117 Budapest, Hungary
- Deuton-X
Ltd., Selmeci u. 89, H-2030, Érd, Hungary
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14
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Handford RC, Nesbit MA, Smith PW, Britt RD, Tilley TD. Versatile Fe-Sn Bonding Interactions in a Metallostannylene System: Multiple Bonding and C-H Bond Activation. J Am Chem Soc 2022; 144:358-367. [PMID: 34958213 DOI: 10.1021/jacs.1c10144] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The metallostannylene Cp*(iPr2MeP)(H)2Fe-SnDMP (1; Cp* = η5-C5Me5; DMP = 2,6-dimesitylphenyl), formed by hydrogen migration in a putative Cp*(iPr2MeP)HFe[Sn(H)DMP] intermediate, serves as a robust platform for exploration of transition-metal main-group element bonding and reactivity. Upon one-electron oxidation, 1 expels H2 to generate the coordinatively unsaturated [Cp*(iPr2MeP)Fe═SnDMP][B(C6F5)4] (3), which possesses a highly polarized Fe-Sn multiple bond that involves interaction of the tin lone pair with iron. Evidence from EPR and 57Fe Mössbauer spectroscopy, along with DFT studies, shows that 3 is primarily an iron-based radical with charge localization at tin. Upon reduction of 3, C-H bond activation of the phosphine ligand was observed to produce Cp*HFe(κ2-(P,Sn)═Sn(DMP)CH2CHMePMeiPr) (5). Complex 5 was also accessed via thermolysis of 1, and kinetics studies of this thermolytic pathway indicate that the reductive elimination of H2 from 1 to produce a stannylyne intermediate, Cp*(iPr2MeP)Fe[SnDMP] (A), is likely rate-determining. Evidence indicates that the production of 5 proceeds through a concerted C-H bond activation. DFT investigations suggest that the transition state for this transformation involves C-H cleavage across the Fe-Sn bond and that a related transition state where C-H bond activation occurs exclusively at the tin center is disfavored, illustrating an effect of iron-tin cooperativity in this system.
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Affiliation(s)
- Rex C Handford
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Mark A Nesbit
- Department of Chemistry, University of California, Davis, Davis, California 95616, United States
| | - Patrick W Smith
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - R David Britt
- Department of Chemistry, University of California, Davis, Davis, California 95616, United States
| | - T Don Tilley
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
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15
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Gordon JB, Albert T, Dey A, Sabuncu S, Siegler MA, Bill E, Moënne-Loccoz P, Goldberg DP. A Reactive, Photogenerated High-Spin ( S = 2) Fe IV(O) Complex via O 2 Activation. J Am Chem Soc 2021; 143:21637-21647. [PMID: 34913683 PMCID: PMC9109941 DOI: 10.1021/jacs.1c10051] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Addition of dioxygen at low temperature to the non-heme ferrous complex FeII(Me3TACN)((OSiPh2)2O) (1) in 2-MeTHF produces a peroxo-bridged diferric complex Fe2III(μ-O2)(Me3TACN)2((OSiPh2)2O)2 (2), which was characterized by UV-vis, resonance Raman, and variable field Mössbauer spectroscopies. Illumination of a frozen solution of 2 in THF with white light leads to homolytic O-O bond cleavage and generation of a FeIV(O) complex 4 (ν(Fe=O) = 818 cm-1; δ = 0.22 mm s-1, ΔEQ = 0.23 mm s-1). Variable field Mössbauer spectroscopy measurements show that 4 is a rare example of a high-spin S = 2 FeIV(O) complex and the first synthetic example to be generated directly from O2. Complex 4 is highly reactive, as expected for a high-spin ferryl, and decays rapidly in fluid solution at cryogenic temperatures. This decay process in 2-MeTHF involves C-H cleavage of the solvent. However, the controlled photolysis of 2 in situ with visible light and excess phenol substrate leads to competitive phenol oxidation, via the proposed transient generation of 4 as the active oxidant.
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Affiliation(s)
- Jesse B. Gordon
- Department of Chemistry, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA
| | - Therese Albert
- Department of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, Oregon 97239, USA
| | - Aniruddha Dey
- Department of Chemistry, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA
| | - Sinan Sabuncu
- Department of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, Oregon 97239, USA
| | - Maxime A. Siegler
- Department of Chemistry, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA
| | - Eckhard Bill
- Department of Inorganic Spectroscopy / Joint Workspace, Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34−36, 45470 Mülheim-an-der-Ruhr, Germany,Corresponding Author: , ,
| | - Pierre Moënne-Loccoz
- Department of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, Oregon 97239, USA,Corresponding Author: , ,
| | - David P. Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA,Corresponding Author: , ,
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16
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Comas-Vilà G, Salvador P. Accurate 57Fe Mössbauer Parameters from General Gaussian Basis Sets. J Chem Theory Comput 2021; 17:7724-7731. [PMID: 34806886 PMCID: PMC8675134 DOI: 10.1021/acs.jctc.1c00722] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
![]()
The prediction of
isomer shifts in 57Fe Mossbauer spectra
is typically achieved by building calibration lines using the values
of the density at the nuclear position. Using Slater-type orbital
basis or large and specific Gaussian-type orbital basis has been thus
far mandatory to achieve accurate predictions with density functional
theory methods. In this work, we show that replacing the value of
the density at the nucleus by the density integrated in a sphere of
radius 0.06 au centered on the Fe nuclei yields excellent calibration
lines (r2 = 0.976) with a high predictive
power (q2 = 0.975, MAE = 0.055 mm·s–1) while using the conventional def2-TZVP basis set
and X-ray geometrical parameters. Our data set comprises 69 57Fe-containing compounds and 103 signals. We also find B3LYP performing
significantly better than the PW91 functional.
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Affiliation(s)
- Gerard Comas-Vilà
- Institute of Computational Chemistry and Catalysis, Chemistry Department, University of Girona, Montilivi Campus, Girona, Catalonia 17003, Spain
| | - Pedro Salvador
- Institute of Computational Chemistry and Catalysis, Chemistry Department, University of Girona, Montilivi Campus, Girona, Catalonia 17003, Spain
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17
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Desmarais JK, Bi W, Zhao J, Hu MH, Alp E, Tse JS. 57Fe Mössbauer isomer shift of pure iron and iron oxides at high pressure-An experimental and theoretical study. J Chem Phys 2021; 154:214104. [PMID: 34240999 DOI: 10.1063/5.0048141] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The 57Fe isomer shift (IS) of pure iron has been measured up to 100 GPa using synchrotron Mössbauer spectroscopy in the time domain. Apart from the expected discontinuity due to the α → ε structural and spin transitions, the IS decreases monotonically with increasing pressure. The absolute shifts were reproduced without semi-empirical calibrations by periodic density functional calculations employing extensive localized basis sets with several common density functionals. However, the best numerical agreement is obtained with the B1WC hybrid functional. Extension of the calculations to 350 GPa, a pressure corresponding to the Earth's inner core, predicted the IS range of 0.00 to -0.85 mm/s, covering the span from Fe(0) to Fe(VI) compounds measured at ambient pressure. The calculations also reproduced the pressure trend from polymorphs of prototypical iron oxide minerals, FeO and Fe2O3. Analysis of the electronic structure shows a strong donation of electrons from oxygen to iron at high pressure. The assignment of formal oxidation to the Fe atom becomes ambiguous under this condition.
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Affiliation(s)
- Jacques K Desmarais
- Department of Physics and Engineering Physics, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5E2, Canada
| | - Wenli Bi
- Department of Physics, University of Alabama at Birmingham, Birmingham, Alabama 35294, USA
| | - Jiyong Zhao
- Advanced Photon Source, Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, Illinois 60439, USA
| | - Michael H Hu
- Advanced Photon Source, Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, Illinois 60439, USA
| | - Esen Alp
- Advanced Photon Source, Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, Illinois 60439, USA
| | - John S Tse
- Department of Physics and Engineering Physics, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5E2, Canada
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18
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Pápai M, Li X, Nielsen MM, Møller KB. Trajectory surface-hopping photoinduced dynamics from Rydberg states of trimethylamine. Phys Chem Chem Phys 2021; 23:10964-10977. [PMID: 33913464 DOI: 10.1039/d1cp00771h] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
We present a computational study on nonadiabatic excited-state dynamics initiated from the 3p Rydberg states of trimethylamine (TMA). We utilise a methodology based on full-dimensional (39 D) trajectory surface-hopping (TSH) simulations, in which propagation is carried out on on-the-fly density functional theory (DFT)/time-dependent DFT (TD-DFT) potentials. Both our electronic structure benchmarks to high-level ab initio methods (EOM-CCSD, CASPT2) and TSH simulations demonstrate high-accuracy of the applied CAM-B3LYP functional for the description of Rydberg excited states. Based on our excited-state simulations, we construct the following mechanistic picture: when pumped resonantly to the 3p Rydberg manifold, TMA coherently vibrates along the planarisation mode with a period of 104 fs and an exponential coherence decay time constant of 240 fs. Nonadiabatic dynamics occur on a faster (∼1 ps) and a slower (∼3 ps) timescale, along the N-C stretching mode by mixing with a dissociative σN-C* state. As a minor relaxation channel, 3p → 3s internal conversion occurs via branching at the σN-C*/3s intersection. We find that photodissociaton is hardly observable within 3 ps (1%), which is a failure of the range-separated hybrid CAM-B3LYP functional, as a consequence of its static electron correlation deficiency at long range. In contrast, pure DFT (GGA-BLYP) provides an accurate long-range description (19% dissociation yield), also supported by comparison to recent ultrafast experiments, even if the Rydberg state energies are significantly underestimated (>1 eV). Finally, we reveal the crucial role of vibrational coherence and energy transfer from the planarisation mode for N-C bond activation and resulting nonadiabatic dynamics. The present work illustrates the importance of nuclear-electronic coupling for excited-state dynamics and branching at conical intersections.
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Affiliation(s)
- Mátyás Pápai
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800 Kongens Lyngby, Denmark.
| | - Xusong Li
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800 Kongens Lyngby, Denmark. and CAS Key Laboratory of Biobased Materials, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao 266101, China
| | - Martin M Nielsen
- Department of Physics, Technical University of Denmark, Fysikvej 307, DK-2800 Kongens Lyngby, Denmark
| | - Klaus B Møller
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800 Kongens Lyngby, Denmark.
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19
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Gordon JB, McGale JP, Siegler MA, Goldberg DP. Proton-Coupled Electron-Transfer Reactivity Controls Iron versus Sulfur Oxidation in Nonheme Iron-Thiolate Complexes. Inorg Chem 2021; 60:6255-6265. [PMID: 33872005 DOI: 10.1021/acs.inorgchem.0c03779] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Reaction of the five-coordinate FeII(N4S) complexes, [FeII(iPr3TACN)(abtX)](OTf) (abt = aminobenzenethiolate, X = H, CF3), with a one-electron oxidant and an appropriate base leads to net H atom loss, generating new FeIII(iminobenzenethiolate) complexes that were characterized by single-crystal X-ray diffraction (XRD), as well as UV-vis, EPR, and Mössbauer spectroscopies. The spectroscopic data indicate that the iminobenzenethiolate complexes have S = 3/2 ground states. In the absence of a base, oxidation of the FeII(abt) complexes leads to disulfide formation instead of oxidation at the metal center. Bracketing studies with separated proton-coupled electron-transfer (PCET) reagents show that the FeII(aminobenzenethiolate) and FeIII(iminobenzenethiolate) forms are readily interconvertible by H+/e- transfer and provide a measure of the bond dissociation free energy (BDFE) for the coordinated N-H bond between 64 and 69 kcal mol-1. This work shows that coordination to the iron center causes a dramatic weakening of the N-H bond and that Fe- versus S-oxidation in a nonheme iron complex can be controlled by the protonation state of an ancillary amino donor.
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Affiliation(s)
- Jesse B Gordon
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Jeremy P McGale
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Maxime A Siegler
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - David P Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
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20
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Nemykin VN, Nevonen DE, Ferch LS, Shepit M, Herbert DE, van Lierop J. Accurate Prediction of Mössbauer Hyperfine Parameters in Bis-Axially Coordinated Iron(II) Phthalocyanines Using Density Functional Theory Calculations: A Story of a Single Orbital Revealed by Natural Bond Orbital Analysis. Inorg Chem 2021; 60:3690-3706. [PMID: 33651595 DOI: 10.1021/acs.inorgchem.0c03373] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Density Functional Theory (DFT) calculations coupled with several exchange-correlation functionals were used for the prediction of Mössbauer hyperfine parameters of 36 bis-axially coordinated iron(II) phthalocyanine complexes with the general formulas PcFeL2, PcFeL'L″, and [PcFeX2]2-, including four new compounds. Both gas-phase and PCM calculations using BPW91 and MN12L exchange-correlation functionals were found to accurately predict both Mössbauer quadrupole splittings and the correct trends in experimentally observed isomer shifts. In comparison, hybrid exchange-correlation functionals underestimated quadrupole splittings, while still accurately predicted isomer shifts. Out of ∼40 exchange-correlation functionals tested, only MN12L was found to correctly reproduce quadrupole splitting trends in the PcFeL2 complexes coordinated with phosphorus-donor axial ligands (i.e., P(OnBu)3 ≈ P(OEt)3 < PMe3 < P[(CH2O)2CH2]-p-C6H4NO2 < PEt3 ≈ PnBu3). Natural Bond Orbital (NBO) analysis was successfully used to explain the general trends in the observed quadrupole splitting for all compounds of interest. In particular, the general trends in the quadrupole splitting correlate well with the axial ligand dependent, NBO-predicted population of the 3dz2 orbital of the Fe ion and are reflective of the hypothesis proposed by Ohya and co-workers ( Inorg. Chem., 1984, 23, 1303) on the adaptability of the phthalocyanine's π-system toward Fe-Lax interactions. The first X-ray crystal structure of a PcFeL2 complex with axial phosphine ligands is also reported.
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Affiliation(s)
- Victor N Nemykin
- Department of Chemistry, University of Manitoba, Winnipeg, MB R3T 2N2, Canada.,Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Dustin E Nevonen
- Department of Chemistry, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
| | - Laura S Ferch
- Department of Chemistry, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
| | - Michael Shepit
- Department of Physics and Astronomy, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
| | - David E Herbert
- Department of Chemistry, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
| | - Johan van Lierop
- Department of Physics and Astronomy, University of Manitoba, Winnipeg, MB R3T 2N2, Canada
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21
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Beromi MM, Kennedy CR, Younker JM, Carpenter AE, Mattler SJ, Throckmorton JA, Chirik PJ. Iron-catalysed synthesis and chemical recycling of telechelic 1,3-enchained oligocyclobutanes. Nat Chem 2021; 13:156-162. [PMID: 33495607 PMCID: PMC7875253 DOI: 10.1038/s41557-020-00614-w] [Citation(s) in RCA: 34] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Accepted: 10/28/2020] [Indexed: 01/30/2023]
Abstract
Closed-loop recycling offers the opportunity to mitigate plastic waste through reversible polymer construction and deconstruction. Although examples of chemical recycling of polymers are known, few have been applied to materials derived from abundant commodity olefinic monomers, which are the building blocks of ubiquitous plastic resins. Here we describe a [2+2] cycloaddition/oligomerization of 1,3-butadiene to yield a previously unrealized telechelic microstructure of (1,n'-divinyl)oligocyclobutane. This material is thermally stable, has stereoregular segments arising from chain-end control, and exhibits high crystallinity even at low molecular weight. Exposure of the oligocyclobutane to vacuum in the presence of the pyridine(diimine) iron precatalyst used to synthesize it resulted in deoligomerization to generate pristine butadiene, demonstrating a rare example of closed-loop chemical recycling of an oligomeric material derived from a commodity hydrocarbon feedstock.
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Affiliation(s)
| | - C. Rose Kennedy
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
| | | | | | | | | | - Paul J. Chirik
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, USA
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22
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Datta D, Saitow M, Sandhöfer B, Neese F. 57Fe Mössbauer parameters from domain based local pair-natural orbital coupled-cluster theory. J Chem Phys 2020; 153:204101. [PMID: 33261496 DOI: 10.1063/5.0022215] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report on applications of the domain based local pair-natural orbital (PNO) coupled-cluster method within the singles and doubles approximation (DLPNO-CCSD) to the calculation of 57Fe isomer shifts and quadrupole splittings in a small training set of iron complexes consisting of large molecular ligands and iron atoms in varying charge, spin, and oxidation states. The electron densities and electric field gradients needed for these calculations were obtained within the recently implemented analytic derivative scheme. A method for the direct treatment of scalar relativistic effects in the calculation of effective electron densities is described by using the first-order Douglas-Kroll-Hess Hamiltonian and a Gaussian charge distribution model for the nucleus. The performance of DLPNO-CCSD is compared with four modern-day density functionals, namely, RPBE, TPSS, B3LYP, and B2PLYP, as well as with the second-order Møller-Plesset perturbation theory. An excellent correlation between the calculated electron densities and the experimental isomer shifts is attained with the DLPNO-CCSD method. The correlation constant a obtained from the slope of the linear correlation plot is found to be ≈-0.31 a.u.3 mm s-1, which agrees very well with the experimental calibration constant α = -0.31 ± 0.04 a.u.3 mm s-1. This value of a is obtained consistently using both nonrelativistic and scalar relativistic DLPNO-CCSD electron densities. While the B3LYP and B2PLYP functionals achieve equally good correlation between theory and experiment, the correlation constant a is found to deviate from the experimental value. Similar trends are observed also for quadrupole splittings. The value of the nuclear quadrupole moment for 57Fe is estimated to be 0.15 b at the DLPNO-CCSD level. This is consistent with previous results and is here supported by a higher level of theory. The DLPNO-CCSD results are found to be insensitive to the intrinsic approximations in the method, in particular the PNO occupation number truncation error, while the results obtained with density functional theory (DFT) are found to depend on the choice of the functional. In a statistical sense, i.e., on the basis of the linear regression analysis, however, the accuracies of the DFT and DLPNO-CCSD results can be considered comparable.
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Affiliation(s)
- Dipayan Datta
- Department of Chemistry and Ames Laboratory, Iowa State University, 201 Spedding Hall, 2416 Pammel Drive, Ames, Iowa 50011-2416, USA
| | - Masaaki Saitow
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
| | | | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany
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23
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Van Stappen C, Decamps L, Cutsail GE, Bjornsson R, Henthorn JT, Birrell JA, DeBeer S. The Spectroscopy of Nitrogenases. Chem Rev 2020; 120:5005-5081. [PMID: 32237739 PMCID: PMC7318057 DOI: 10.1021/acs.chemrev.9b00650] [Citation(s) in RCA: 117] [Impact Index Per Article: 23.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Indexed: 01/08/2023]
Abstract
Nitrogenases are responsible for biological nitrogen fixation, a crucial step in the biogeochemical nitrogen cycle. These enzymes utilize a two-component protein system and a series of iron-sulfur clusters to perform this reaction, culminating at the FeMco active site (M = Mo, V, Fe), which is capable of binding and reducing N2 to 2NH3. In this review, we summarize how different spectroscopic approaches have shed light on various aspects of these enzymes, including their structure, mechanism, alternative reactivity, and maturation. Synthetic model chemistry and theory have also played significant roles in developing our present understanding of these systems and are discussed in the context of their contributions to interpreting the nature of nitrogenases. Despite years of significant progress, there is still much to be learned from these enzymes through spectroscopic means, and we highlight where further spectroscopic investigations are needed.
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Affiliation(s)
- Casey Van Stappen
- Max Planck Institute for
Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Laure Decamps
- Max Planck Institute for
Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - George E. Cutsail
- Max Planck Institute for
Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Ragnar Bjornsson
- Max Planck Institute for
Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Justin T. Henthorn
- Max Planck Institute for
Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - James A. Birrell
- Max Planck Institute for
Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Serena DeBeer
- Max Planck Institute for
Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
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24
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Li J, Liao HJ, Tang Y, Huang JL, Cha L, Lin TS, Lee JL, Kurnikov IV, Kurnikova MG, Chang WC, Chan NL, Guo Y. Epoxidation Catalyzed by the Nonheme Iron(II)- and 2-Oxoglutarate-Dependent Oxygenase, AsqJ: Mechanistic Elucidation of Oxygen Atom Transfer by a Ferryl Intermediate. J Am Chem Soc 2020; 142:6268-6284. [PMID: 32131594 PMCID: PMC7343540 DOI: 10.1021/jacs.0c00484] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Mechanisms of enzymatic epoxidation via oxygen atom transfer (OAT) to an olefin moiety is mainly derived from the studies on thiolate-heme containing epoxidases, such as cytochrome P450 epoxidases. The molecular basis of epoxidation catalyzed by nonheme-iron enzymes is much less explored. Herein, we present a detailed study on epoxidation catalyzed by the nonheme iron(II)- and 2-oxoglutarate-dependent (Fe/2OG) oxygenase, AsqJ. The native substrate and analogues with different para substituents ranging from electron-donating groups (e.g., methoxy) to electron-withdrawing groups (e.g., trifluoromethyl) were used to probe the mechanism. The results derived from transient-state enzyme kinetics, Mössbauer spectroscopy, reaction product analysis, X-ray crystallography, density functional theory calculations, and molecular dynamic simulations collectively revealed the following mechanistic insights: (1) The rapid O2 addition to the AsqJ Fe(II) center occurs with the iron-bound 2OG adopting an online-binding mode in which the C1 carboxylate group of 2OG is trans to the proximal histidine (His134) of the 2-His-1-carboxylate facial triad, instead of assuming the offline-binding mode with the C1 carboxylate group trans to the distal histidine (His211); (2) The decay rate constant of the ferryl intermediate is not strongly affected by the nature of the para substituents of the substrate during the OAT step, a reactivity behavior that is drastically different from nonheme Fe(IV)-oxo synthetic model complexes; (3) The OAT step most likely proceeds through a stepwise process with the initial formation of a C(benzylic)-O bond to generate an Fe-alkoxide species, which is observed in the AsqJ crystal structure. The subsequent C3-O bond formation completes the epoxide installation.
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Affiliation(s)
- Jikun Li
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Hsuan-Jen Liao
- Institute of Biochemistry and Molecular Biology, College of Medicine, National Taiwan University, Taipei 100, Taiwan
| | - Yijie Tang
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Jhih-Liang Huang
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - Lide Cha
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - Te-Sheng Lin
- Institute of Biochemistry and Molecular Biology, College of Medicine, National Taiwan University, Taipei 100, Taiwan
| | - Justin L. Lee
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Igor V. Kurnikov
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Maria G. Kurnikova
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
| | - Wei-chen Chang
- Department of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - Nei-Li Chan
- Institute of Biochemistry and Molecular Biology, College of Medicine, National Taiwan University, Taipei 100, Taiwan
| | - Yisong Guo
- Department of Chemistry, Carnegie Mellon University, Pittsburgh, Pennsylvania 15213, United States
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25
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Credendino L, Sproules S. Modulating Iron Spin States with Radical Ligands: A Density Functional Theoretical Study. ASIAN J ORG CHEM 2020. [DOI: 10.1002/ajoc.201900626] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
| | - Stephen Sproules
- WestCHEM School of ChemistryUniversity of Glasgow Glasgow G12 8QQ UK
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26
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Ossinger S, Näther C, Tuczek F. Spin-crossover behavior of bis[dihydrobis(4-methylpyrazol-1-yl-borate)]-(2,2'-bipyridine)iron and analogous complexes in the bulk and in thin films: Elucidating the influence of π-π-interactions on the type of spin transition. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2020; 32:094001. [PMID: 31722328 DOI: 10.1088/1361-648x/ab5776] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The new complex [Fe(H2B(4-CH3-pz)2)2(bipy)] (1, pz = pyrazole, bipy = 2,2'-bipyridine) is synthesized and investigated by temperature-dependent magnetic measurements, Mößbauer, electronic absorption and vibrational spectroscopy as well as single crystal x-ray diffraction. In the crystal structure of 1 the complexes are pairwise linked to dimers by intermolecular π-π interactions between their bipyridine ligands, with a shortest intradimer distance between two neighboring pyridine rings of 3.575 Å. Analysis of the crystal structures of related iron(II) bis(dihydrobis(pyrazoyl)borate) complexes reveals that most of them contain similar dimers, and that at short π-π intra-dimer distances the complexes are locked in the high-spin state whereas at long distances complete thermal spin crossover (SCO) is observed. Compound 1 with an intermediate π-π intra-dimer distance shows incomplete SCO in the bulk but complete SCO in vacuum-deposited thin films where intermolecular interactions are absent. The implications of this remarkable structure-property relationship are discussed.
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Affiliation(s)
- Sascha Ossinger
- Institute of Inorganic Chemistry, Christian-Albrechts-University Kiel, Max-Eyth-Str. 2, 24118 Kiel, Germany
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27
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Regenauer NI, Settele S, Bill E, Wadepohl H, Roşca DA. Bis(imino)pyrazine-Supported Iron Complexes: Ligand-Based Redox Chemistry, Dearomatization, and Reversible C-C Bond Formation. Inorg Chem 2020; 59:2604-2612. [PMID: 31990534 DOI: 10.1021/acs.inorgchem.9b03665] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Iron complexes supported by novel π-acidic bis(imino)pyrazine (PPzDI) ligands can be functionalized at the nonligated nitrogen atom, and this has a marked effect on the redox properties of the resulting complexes. Dearomatization is observed in the presence of cobaltocene, which reversibly reduces the pyrazine core and not the imine functionality, as observed in the case of the pyridinediimine-ligated iron analogues. The resulting ligand-based radical is prone to dimerization through the formation of a long carbon-carbon bond, which can be subsequently cleaved under mild oxidative conditions.
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Affiliation(s)
- Nicolas I Regenauer
- Anorganisch-Chemisches Institut , Universität Heidelberg , Im Neuenheimer Feld 276 , 69120 Heidelberg , Germany
| | - Simon Settele
- Anorganisch-Chemisches Institut , Universität Heidelberg , Im Neuenheimer Feld 276 , 69120 Heidelberg , Germany
| | - Eckhard Bill
- Max-Planck-Institut für Chemische Energiekonversion , Stiftstraße 24-36 , 45470 Mülheim/Ruhr , Germany
| | - Hubert Wadepohl
- Anorganisch-Chemisches Institut , Universität Heidelberg , Im Neuenheimer Feld 276 , 69120 Heidelberg , Germany
| | - Dragoş-Adrian Roşca
- Anorganisch-Chemisches Institut , Universität Heidelberg , Im Neuenheimer Feld 276 , 69120 Heidelberg , Germany
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28
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Zhu H, Gao C, Filatov M, Zou W. Mössbauer isomer shifts and effective contact densities obtained by the exact two-component (X2C) relativistic method and its local variants. Phys Chem Chem Phys 2020; 22:26776-26786. [DOI: 10.1039/d0cp04549g] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
A standalone program to calculate scalar relativistic effective contact densities.
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Affiliation(s)
- Hong Zhu
- Institute of Modern Physics
- Northwest University, and Shaanxi Key Laboratory for Theoretical Physics Frontiers
- Xi'an
- P. R. China
| | - Chun Gao
- Institute of Modern Physics
- Northwest University, and Shaanxi Key Laboratory for Theoretical Physics Frontiers
- Xi'an
- P. R. China
| | - Michael Filatov
- Department of Chemistry
- Kyungpook National University
- Daegu 702-701
- South Korea
| | - Wenli Zou
- Institute of Modern Physics
- Northwest University, and Shaanxi Key Laboratory for Theoretical Physics Frontiers
- Xi'an
- P. R. China
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29
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Gordon JB, Vilbert AC, DiMucci IM, MacMillan SN, Lancaster KM, Moënne-Loccoz P, Goldberg DP. Activation of Dioxygen by a Mononuclear Nonheme Iron Complex: Sequential Peroxo, Oxo, and Hydroxo Intermediates. J Am Chem Soc 2019; 141:17533-17547. [PMID: 31647656 DOI: 10.1021/jacs.9b05274] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The activation of dioxygen by FeII(Me3TACN)(S2SiMe2) (1) is reported. Reaction of 1 with O2 at -135 °C in 2-MeTHF generates a thiolate-ligated (peroxo)diiron complex FeIII2(O2)(Me3TACN)2(S2SiMe2)2 (2) that was characterized by UV-vis (λmax = 300, 390, 530, 723 nm), Mössbauer (δ = 0.53, |ΔEQ| = 0.76 mm s-1), resonance Raman (RR) (ν(O-O) = 849 cm-1), and X-ray absorption (XAS) spectroscopies. Complex 2 is distinct from the outer-sphere oxidation product 1ox (UV-vis (λmax = 435, 520, 600 nm), Mössbauer (δ = 0.45, |ΔEQ| = 3.6 mm s-1), and EPR (S = 5/2, g = [6.38, 5.53, 1.99])), obtained by one-electron oxidation of 1. Cleavage of the peroxo O-O bond can be initiated either photochemically or thermally to produce a new species assigned as an FeIV(O) complex, FeIV(O)(Me3TACN)(S2SiMe2) (3), which was identified by UV-vis (λmax = 385, 460, 890 nm), Mössbauer (δ = 0.21, |ΔEQ| = 1.57 mm s-1), RR (ν(FeIV═O) = 735 cm-1), and X-ray absorption spectroscopies, as well as reactivity patterns. Reaction of 3 at low temperature with H atom donors gives a new species, FeIII(OH)(Me3TACN)(S2SiMe2) (4). Complex 4 was independently synthesized from 1 by the stoichiometric addition of a one-electron oxidant and a hydroxide source. This work provides a rare example of dioxygen activation at a mononuclear nonheme iron(II) complex that produces both FeIII-O-O-FeIII and FeIV(O) species in the same reaction with O2. It also demonstrates the feasibility of forming Fe/O2 intermediates with strongly donating sulfur ligands while avoiding immediate sulfur oxidation.
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Affiliation(s)
- Jesse B Gordon
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
| | - Avery C Vilbert
- Department of Chemistry and Chemical Biology, Baker Laboratory , Cornell University , Ithaca , New York 14853 , United States
| | - Ida M DiMucci
- Department of Chemistry and Chemical Biology, Baker Laboratory , Cornell University , Ithaca , New York 14853 , United States
| | - Samantha N MacMillan
- Department of Chemistry and Chemical Biology, Baker Laboratory , Cornell University , Ithaca , New York 14853 , United States
| | - Kyle M Lancaster
- Department of Chemistry and Chemical Biology, Baker Laboratory , Cornell University , Ithaca , New York 14853 , United States
| | - Pierre Moënne-Loccoz
- Department of Chemical Physiology and Biochemistry , Oregon Health & Science University , Portland , Oregon 97239 , United States
| | - David P Goldberg
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
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30
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Ossinger S, Naggert H, Bill E, Näther C, Tuczek F. Electronic Structure, Vibrational Spectra, and Spin-Crossover Properties of Vacuum-Evaporable Iron(II) Bis(dihydrobis(pyrazolyl)borate) Complexes with Diimine Coligands. Origin of Giant Raman Features. Inorg Chem 2019; 58:12873-12887. [DOI: 10.1021/acs.inorgchem.9b01813] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sascha Ossinger
- Institute of Inorganic Chemistry, Christian-Albrechts-University Kiel, Max-Eyth-Strasse 2, 24118 Kiel, Germany
| | - Holger Naggert
- Institute of Inorganic Chemistry, Christian-Albrechts-University Kiel, Max-Eyth-Strasse 2, 24118 Kiel, Germany
| | - Eckhard Bill
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany
| | - Christian Näther
- Institute of Inorganic Chemistry, Christian-Albrechts-University Kiel, Max-Eyth-Strasse 2, 24118 Kiel, Germany
| | - Felix Tuczek
- Institute of Inorganic Chemistry, Christian-Albrechts-University Kiel, Max-Eyth-Strasse 2, 24118 Kiel, Germany
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31
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Mineva T, Matanovic I, Atanassov P, Sougrati MT, Stievano L, Clémancey M, Kochem A, Latour JM, Jaouen F. Understanding Active Sites in Pyrolyzed Fe–N–C Catalysts for Fuel Cell Cathodes by Bridging Density Functional Theory Calculations and 57Fe Mössbauer Spectroscopy. ACS Catal 2019. [DOI: 10.1021/acscatal.9b02586] [Citation(s) in RCA: 118] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Tzonka Mineva
- Institut Charles Gerhardt Montpellier, UMR 5253, CNRS, Université Montpellier, ENSCM, Montpellier 34090, France
| | - Ivana Matanovic
- The Department of Chemical and Biological Engineering, Center for Micro-Engineered Materials (CMEM), University of New Mexico, Albuquerque, New Mexico 87131, United States
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Plamen Atanassov
- The Department of Chemical and Biological Engineering, Center for Micro-Engineered Materials (CMEM), University of New Mexico, Albuquerque, New Mexico 87131, United States
- Chemical & Biomolecular Engineering and National Fuel Cell Research Center, University of California, Irvine, California 92697-2580, United States
| | - Moulay-Tahar Sougrati
- Institut Charles Gerhardt Montpellier, UMR 5253, CNRS, Université Montpellier, ENSCM, Montpellier 34090, France
| | - Lorenzo Stievano
- Institut Charles Gerhardt Montpellier, UMR 5253, CNRS, Université Montpellier, ENSCM, Montpellier 34090, France
| | - Martin Clémancey
- Université Grenoble Alpes CNRS, CEA, DRF/IRIG/LCBM/pmb, 17 rue des Martyrs, Grenoble 38000, France
| | - Amélie Kochem
- Université Grenoble Alpes CNRS, CEA, DRF/IRIG/LCBM/pmb, 17 rue des Martyrs, Grenoble 38000, France
| | - Jean-Marc Latour
- Université Grenoble Alpes CNRS, CEA, DRF/IRIG/LCBM/pmb, 17 rue des Martyrs, Grenoble 38000, France
| | - Frédéric Jaouen
- Institut Charles Gerhardt Montpellier, UMR 5253, CNRS, Université Montpellier, ENSCM, Montpellier 34090, France
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32
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Confer AM, Sabuncu S, Siegler MA, Moënne-Loccoz P, Goldberg DP. Mononuclear, Nonheme, High-Spin {FeNO} 7/8 Complexes Supported by a Sterically Encumbered N 4S-Thioether Ligand. Inorg Chem 2019; 58:9576-9580. [PMID: 31328501 DOI: 10.1021/acs.inorgchem.9b01475] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The synthesis of a new nonheme iron NO binding complex, [FeII(CH3CN)(N3Py2PhSEtCN)](BF4)2 (1), is reported. Complex 1, which contains two sterically encumbering phenyl substituents, exhibits a high-spin (hs) FeII (S = 2) ground state in contrast to the S = 0 ground state for unsubstituted [FeII(CH3CN)(N3PySEtCN)(BF4)2. Reaction of 1 with NO(g) in CH3CN yields an {FeNO}7 (S = 3/2) complex 2, which slowly decays at 25 °C with loss of NO• to regenerate 1. One-electron reduction of 2 with Cr(C6H6)2 at -40 °C yields the metastable, S = 1 {FeNO}8 complex 3. The nitrosyl moieties in thioether-ligated 2 and 3 are significantly less activated than in thiolate-ligated [Fe(NO)(N3PyS)]+/0, a structurally analogous pair of hs {FeNO}7/8 complexes. Calculations reveal that reduction of 2 is iron-centered, which may be a general property of hs {FeNO}7/8 complexes.
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Affiliation(s)
- Alex M Confer
- Department of Chemistry , The Johns Hopkins University , Baltimore , Maryland 21218 , United States
| | - Sinan Sabuncu
- Department of Biochemistry & Molecular Biology , Oregon Health & Science University , Portland , Oregon 97239 , United States
| | - Maxime A Siegler
- Department of Chemistry , The Johns Hopkins University , Baltimore , Maryland 21218 , United States
| | - Pierre Moënne-Loccoz
- Department of Biochemistry & Molecular Biology , Oregon Health & Science University , Portland , Oregon 97239 , United States
| | - David P Goldberg
- Department of Chemistry , The Johns Hopkins University , Baltimore , Maryland 21218 , United States
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33
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Confer AM, Vilbert AC, Dey A, Lancaster KM, Goldberg DP. A Mononuclear, Nonheme Fe II-Piloty's Acid (PhSO 2NHOH) Adduct: An Intermediate in the Production of {FeNO} 7/8 Complexes from Piloty's Acid. J Am Chem Soc 2019; 141:7046-7055. [PMID: 30994347 DOI: 10.1021/jacs.9b01700] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Reaction of the mononuclear nonheme complex [FeII(CH3CN)(N3PyS)]BF4 (1) with an HNO donor, Piloty's acid (PhSO2NHOH, P.A.), at low temperature affords a high-spin ( S = 2) FeII-P.A. intermediate (2), characterized by 57Fe Mössbauer and Fe K-edge X-ray absorption (XAS) spectroscopies, with interpretation of both supported by DFT calculations. The combined methods indicate that P.A. anion binds as the N-deprotonated tautomer (PhSO2NOH-) to [FeII(N3PyS)]+, leading to 2. Complex 2 is the first spectroscopically characterized example, to our knowledge, of P.A. anion bound to a redox-active metal center. Warming of 2 above -60 °C yields the stable {FeNO}7 complex [Fe(NO)(N3PyS)]BF4 (4), as evidenced by 1H NMR, ATR-IR, and Mössbauer spectroscopies. Isotope labeling experiments with 15N-labeled P.A. confirm that the nitrosyl ligand in 4 derives from P.A. In contrast, addition of a second equivalent of a strong base leads to S-N cleavage and production of an {FeNO}8 species, the deprotonated analog of an Fe-HNO complex. This work has implications for the targeted delivery of HNO/NO-/NO· to nonheme Fe centers in biological and synthetic applications, and suggests a new role for nonheme FeII complexes in the assisted degradation of HNO donor molecules.
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Affiliation(s)
- Alex M Confer
- Department of Chemistry , The Johns Hopkins University , Baltimore , Maryland 21218 , United States
| | - Avery C Vilbert
- Baker Laboratory, Department of Chemistry and Chemical Biology , Cornell University , Ithaca , New York 14853 , United States
| | - Aniruddha Dey
- Department of Chemistry , The Johns Hopkins University , Baltimore , Maryland 21218 , United States
| | - Kyle M Lancaster
- Baker Laboratory, Department of Chemistry and Chemical Biology , Cornell University , Ithaca , New York 14853 , United States
| | - David P Goldberg
- Department of Chemistry , The Johns Hopkins University , Baltimore , Maryland 21218 , United States
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34
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Sugaya T, Fujihara T, Naka T, Furubayashi T, Matsushita A, Isago H, Nagasawa A. Observation of the First Spin Crossover in an Iron(II) Complex with an S 6 Coordination Environment: Tris[bis(N,N-diethylamino)carbeniumdithiocarboxylato]iron(II) Hexafluorophosphate. Chemistry 2018; 24:17955-17963. [PMID: 30311982 DOI: 10.1002/chem.201803330] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2018] [Revised: 10/01/2018] [Indexed: 11/10/2022]
Abstract
For the first time, the spin-crossover (SCO) phenomenon has been observed in an FeII -S6 system in a tris(chelate)-type iron(II) complex with a zwitterionic sulfur donor bidentate, bis(N,N-diethylamino)carbeniumdithiocarboxylate (EtL), [FeII (EtL)3 ](PF6 )2 (1), as synthesized by the reaction of a precursor complex [FeII (CH3 CN)6 ](PF6 )2 with EtL. In the solid state, the high-spin (HS) d6 state at ambient temperature and the low-spin (LS) d6 state at temperatures lower than approximately 240 K were evidenced by magnetic measurements with SQUID and Mössbauer spectra in the temperature range 4-290 K. X-ray analyses of the crystals at various temperatures disclosed that the distorted trigonal prismatic coordination environments essentially do not change; however, contraction of Fe-S distances by approximately 10 % (0.22 Å), ordering of alkyl groups in EtL and PF6 - counteranions, and formation of significant intermolecular S⋅⋅⋅S interactions between adjacent molecules (average distances of 3.59 Å) take place during the transition from the HS to the LS state. A large decrease in the volume of the formula unit (78.1 Å3 ) might be responsible for the large activation barrier, thereby resulting in a slow phase transition upon cooling.
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Affiliation(s)
- Tomoaki Sugaya
- Department of Chemistry, Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama, 338-8570, Japan.,Education Center, Faculty of Engineering, Chiba Institute of Technology, 2-1-1 Shibazono, Narashino-shi, Chiba, 275-0023, Japan
| | - Takashi Fujihara
- Comprehensive Analysis Center for Science, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama, 338-8570, Japan
| | - Takashi Naka
- National Institute for Materials Science, 1-2-1 Sengen, Tsukuba-shi, Ibaraki, 305-0047, Japan
| | - Takao Furubayashi
- National Institute for Materials Science, 1-2-1 Sengen, Tsukuba-shi, Ibaraki, 305-0047, Japan
| | - Akiyuki Matsushita
- National Institute for Materials Science, 1-2-1 Sengen, Tsukuba-shi, Ibaraki, 305-0047, Japan
| | - Hiroaki Isago
- National Institute for Materials Science, 1-2-1 Sengen, Tsukuba-shi, Ibaraki, 305-0047, Japan
| | - Akira Nagasawa
- Department of Chemistry, Graduate School of Science and Engineering, Saitama University, 255 Shimo-Okubo, Sakura-ku, Saitama, 338-8570, Japan
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35
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Wolny JA, Schünemann V, Németh Z, Vankó G. Spectroscopic techniques to characterize the spin state: Vibrational, optical, Mössbauer, NMR, and X-ray spectroscopy. CR CHIM 2018. [DOI: 10.1016/j.crci.2018.10.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
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36
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Gordon JB, McGale JP, Prendergast JR, Shirani-Sarmazeh Z, Siegler MA, Jameson GNL, Goldberg DP. Structures, Spectroscopic Properties, and Dioxygen Reactivity of 5- and 6-Coordinate Nonheme Iron(II) Complexes: A Combined Enzyme/Model Study of Thiol Dioxygenases. J Am Chem Soc 2018; 140:14807-14822. [PMID: 30346746 PMCID: PMC6596423 DOI: 10.1021/jacs.8b08349] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The synthesis of four new FeII(N4S(thiolate)) complexes as models of the thiol dioxygenases are described. They are composed of derivatives of the neutral, tridentate ligand triazacyclononane (R3TACN; R = Me, iPr) and 2-aminobenzenethiolate (abtx; X = H, CF3), a non-native substrate for thiol dioxygenases. The coordination number of these complexes depends on the identity of the TACN derivative, giving 6-coordinate (6-coord) complexes for FeII(Me3TACN)(abtx)(OTf) (1: X = H; 2: X = CF3) and 5-coordinate (5-coord) complexes for [FeII(iPr3TACN)(abtx)](OTf) (3: X = H; 4: X = CF3). Complexes 1-4 were examined by UV-vis, 1H/19F NMR, and Mössbauer spectroscopies, and density functional theory (DFT) calculations were employed to support the data. Mössbauer spectroscopy reveals that the 6-coord 1-2 and 5-coord 3- 4 exhibit distinct spectra, and these data are compared with that for cysteine-bound CDO, helping to clarify the coordination environment of the cys-bound FeII active site. Reaction of 1 or 2 with O2 at -95 °C leads to S-oxygenation of the abt ligand, and in the case of 2, a rare di(sulfinato)-bridged complex, [Fe2III(μ-O)((2-NH2) p-CF3C6H3SO2)2](OTf)2 ( 5), was obtained. Parallel enzymatic studies on the CDO variant C93G were carried out with the abt substrate and show that reaction with O2 leads to disulfide formation, as opposed to S-oxygenation. The combined model and enzyme studies show that the thiol dioxygenases can operate via a 6-coord FeII center, in contrast to the accepted mechanism for nonheme iron dioxygenases, and that proper substrate chelation to Fe appears to be critical for S-oxygenation.
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Affiliation(s)
- Jesse B Gordon
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
- School of Chemistry , Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne , 30 Flemington Road , Parkville , Victoria 3010 , Australia
| | - Jeremy P McGale
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
- School of Chemistry , Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne , 30 Flemington Road , Parkville , Victoria 3010 , Australia
| | - Joshua R Prendergast
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
- School of Chemistry , Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne , 30 Flemington Road , Parkville , Victoria 3010 , Australia
| | - Zahra Shirani-Sarmazeh
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
- School of Chemistry , Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne , 30 Flemington Road , Parkville , Victoria 3010 , Australia
| | - Maxime A Siegler
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
- School of Chemistry , Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne , 30 Flemington Road , Parkville , Victoria 3010 , Australia
| | - Guy N L Jameson
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
- School of Chemistry , Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne , 30 Flemington Road , Parkville , Victoria 3010 , Australia
| | - David P Goldberg
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
- School of Chemistry , Bio21 Molecular Science and Biotechnology Institute, The University of Melbourne , 30 Flemington Road , Parkville , Victoria 3010 , Australia
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37
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Dey A, Confer AM, Vilbert AC, Moënne-Loccoz P, Lancaster KM, Goldberg DP. A Nonheme Sulfur-Ligated {FeNO} 6 Complex and Comparison with Redox-Interconvertible {FeNO} 7 and {FeNO} 8 Analogues. Angew Chem Int Ed Engl 2018; 57:13465-13469. [PMID: 30125450 DOI: 10.1002/anie.201806146] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2018] [Indexed: 01/23/2023]
Abstract
A nonheme {FeNO}6 complex, [Fe(NO)(N3PyS)]2+ , was synthesized by reversible, one-electron oxidation of an {FeNO}7 analogue. This complex completes the first known series of sulfur-ligated {FeNO}6-8 complexes. All three {FeNO}6-8 complexes are readily interconverted by one-electron oxidation/reduction. A comparison of spectroscopic data (UV/Vis, NMR, IR, Mössbauer, X-ray absorption) provides a complete picture of the electronic and structural changes that occur upon {FeNO}6 -{FeNO}8 interconversion. Dissociation of NO from the new {FeNO}6 complex is shown to be controlled by solvent, temperature, and photolysis, which is rare for a sulfur-ligated {FeNO}6 species.
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Affiliation(s)
- Aniruddha Dey
- Department of Chemistry, The Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Alex M Confer
- Department of Chemistry, The Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Avery C Vilbert
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA
| | - Pierre Moënne-Loccoz
- Division of Environmental and Biomolecular Systems, Oregon Health and Science University, Portland, OR, 97239, USA
| | - Kyle M Lancaster
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14853, USA
| | - David P Goldberg
- Department of Chemistry, The Johns Hopkins University, Baltimore, MD, 21218, USA
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38
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Dey A, Confer AM, Vilbert AC, Moënne‐Loccoz P, Lancaster KM, Goldberg DP. A Nonheme Sulfur‐Ligated {FeNO}
6
Complex and Comparison with Redox‐Interconvertible {FeNO}
7
and {FeNO}
8
Analogues. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201806146] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Aniruddha Dey
- Department of Chemistry The Johns Hopkins University Baltimore MD 21218 USA
| | - Alex M. Confer
- Department of Chemistry The Johns Hopkins University Baltimore MD 21218 USA
| | - Avery C. Vilbert
- Department of Chemistry and Chemical Biology Cornell University Ithaca NY 14853 USA
| | - Pierre Moënne‐Loccoz
- Division of Environmental and Biomolecular Systems Oregon Health and Science University Portland OR 97239 USA
| | - Kyle M. Lancaster
- Department of Chemistry and Chemical Biology Cornell University Ithaca NY 14853 USA
| | - David P. Goldberg
- Department of Chemistry The Johns Hopkins University Baltimore MD 21218 USA
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39
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Kamnev AA, Tugarova AV. Sample treatment in Mössbauer spectroscopy for protein-related analyses: Nondestructive possibilities to look inside metal-containing biosystems. Talanta 2017; 174:819-837. [PMID: 28738659 DOI: 10.1016/j.talanta.2017.06.057] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2017] [Revised: 06/01/2017] [Accepted: 06/19/2017] [Indexed: 01/07/2023]
Abstract
In this review, the unique possibilities are considered of the 57Fe transmission (TMS) and 57Co emission (EMS) variants of Mössbauer (nuclear γ-resonance) spectroscopy as nondestructive techniques with minimal sample preparation/treatment and a significant analytical potential, with a focus on the analysis of cation-binding sites in metalloproteins. The techniques are shown to provide unique structural and quantitative information on the coordination microenvironment, the chemical state and transformations of the Mössbauer nuclides in sophisticated metal-containing proteins, including those within complicated supramolecular structures, and in microbial cells or tissues. Recent representative examples of analyses of Fe-containing proteins by 57Fe TMS are briefly discussed, along with the newly emerging data on using 57Co EMS for probing the structural organisation of 57Co-doped cation-binding sites in sophisticated biocomplexes including metalloenzymes. Finally, some rare or exotic applications of Mössbauer spectroscopy (including the synchrotron-based methodology) in protein-related studies are outlined.
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Affiliation(s)
- Alexander A Kamnev
- Laboratory of Biochemistry, Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, 13 Prosp. Entuziastov, 410049, Saratov, Russia.
| | - Anna V Tugarova
- Laboratory of Biochemistry, Institute of Biochemistry and Physiology of Plants and Microorganisms, Russian Academy of Sciences, 13 Prosp. Entuziastov, 410049, Saratov, Russia
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40
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Kyne SH, Clémancey M, Blondin G, Derat E, Fensterbank L, Jutand A, Lefèvre G, Ollivier C. Elucidating Dramatic Ligand Effects on SET Processes: Iron Hydride versus Iron Borohydride Catalyzed Reductive Radical Cyclization of Unsaturated Organic Halides. Organometallics 2017. [DOI: 10.1021/acs.organomet.7b00603] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Sara H. Kyne
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 8232, Institut Parisien de Chimie Moléculaire, 4 place Jussieu, F-75252 Paris Cedex 05, France
| | - Martin Clémancey
- Université Grenoble Alpes, CEA, CNRS, LCBM (UMR 5249), pmb, F-38000 Grenoble, France
| | - Geneviève Blondin
- Université Grenoble Alpes, CEA, CNRS, LCBM (UMR 5249), pmb, F-38000 Grenoble, France
| | - Etienne Derat
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 8232, Institut Parisien de Chimie Moléculaire, 4 place Jussieu, F-75252 Paris Cedex 05, France
| | - Louis Fensterbank
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 8232, Institut Parisien de Chimie Moléculaire, 4 place Jussieu, F-75252 Paris Cedex 05, France
| | - Anny Jutand
- Ecole Normale Supérieure-PSL Research University, Département de Chimie, Sorbonne Universités, UPMC Univ Paris 06, CNRS UMR 8640 PASTEUR, 24 Rue Lhomond, F-75231 Paris Cedex 05, France
| | | | - Cyril Ollivier
- Sorbonne Universités, UPMC Univ Paris 06, CNRS, UMR 8232, Institut Parisien de Chimie Moléculaire, 4 place Jussieu, F-75252 Paris Cedex 05, France
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41
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McWilliams SF, Brennan-Wydra E, MacLeod KC, Holland PL. Density Functional Calculations for Prediction of 57Fe Mössbauer Isomer Shifts and Quadrupole Splittings in β-Diketiminate Complexes. ACS OMEGA 2017; 2:2594-2606. [PMID: 28691111 PMCID: PMC5494642 DOI: 10.1021/acsomega.7b00595] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2017] [Accepted: 05/24/2017] [Indexed: 05/09/2023]
Abstract
The relative ease of Mössbauer spectroscopy and of density functional theory (DFT) calculations encourages the use of Mössbauer parameters as a validation method for calculations, and the use of calculations as a double check on crystallographic structures. A number of studies have proposed correlations between the computationally determined electron density at the iron nucleus and the observed isomer shift, but deviations from these correlations in low-valent iron β-diketiminate complexes encouraged us to determine a new correlation for these compounds. The use of B3LYP/def2-TZVP in the ORCA platform provides an excellent balance of accuracy and speed. We provide here not only this new correlation and a clear guide to its use but also a systematic analysis of the limitations of this approach. We also highlight the impact of crystallographic inaccuracies, DFT model truncation, and spin states, with intent to assist experimentalists to use Mössbauer spectroscopy and calculations together.
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Affiliation(s)
- Sean F McWilliams
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Emma Brennan-Wydra
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - K Cory MacLeod
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
| | - Patrick L Holland
- Department of Chemistry, Yale University, 225 Prospect Street, New Haven, Connecticut 06520, United States
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42
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Proppe J, Reiher M. Reliable Estimation of Prediction Uncertainty for Physicochemical Property Models. J Chem Theory Comput 2017; 13:3297-3317. [PMID: 28581746 DOI: 10.1021/acs.jctc.7b00235] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
One of the major challenges in computational science is to determine the uncertainty of a virtual measurement, that is the prediction of an observable based on calculations. As highly accurate first-principles calculations are in general unfeasible for most physical systems, one usually resorts to parameteric property models of observables, which require calibration by incorporating reference data. The resulting predictions and their uncertainties are sensitive to systematic errors such as inconsistent reference data, parametric model assumptions, or inadequate computational methods. Here, we discuss the calibration of property models in the light of bootstrapping, a sampling method that can be employed for identifying systematic errors and for reliable estimation of the prediction uncertainty. We apply bootstrapping to assess a linear property model linking the 57Fe Mössbauer isomer shift to the contact electron density at the iron nucleus for a diverse set of 44 molecular iron compounds. The contact electron density is calculated with 12 density functionals across Jacob's ladder (PWLDA, BP86, BLYP, PW91, PBE, M06-L, TPSS, B3LYP, B3PW91, PBE0, M06, TPSSh). We provide systematic-error diagnostics and reliable, locally resolved uncertainties for isomer-shift predictions. Pure and hybrid density functionals yield average prediction uncertainties of 0.06-0.08 mm s-1 and 0.04-0.05 mm s-1, respectively, the latter being close to the average experimental uncertainty of 0.02 mm s-1. Furthermore, we show that both model parameters and prediction uncertainty depend significantly on the composition and number of reference data points. Accordingly, we suggest that rankings of density functionals based on performance measures (e.g., the squared coefficient of correlation, r2, or the root-mean-square error, RMSE) should not be inferred from a single data set. This study presents the first statistically rigorous calibration analysis for theoretical Mössbauer spectroscopy, which is of general applicability for physicochemical property models and not restricted to isomer-shift predictions. We provide the statistically meaningful reference data set MIS39 and a new calibration of the isomer shift based on the PBE0 functional.
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Affiliation(s)
- Jonny Proppe
- Laboratorium für Physikalische Chemie, ETH Zürich , Vladimir-Prelog-Weg 2, 8093 Zürich, Switzerland
| | - Markus Reiher
- Laboratorium für Physikalische Chemie, ETH Zürich , Vladimir-Prelog-Weg 2, 8093 Zürich, Switzerland
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43
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Gorski A, Starukhin A, Stavrov SS. Mössbauer spectroscopy as a probe of electric field in heme pocket of deoxyheme proteins: theoretical approach. J Radioanal Nucl Chem 2017. [DOI: 10.1007/s10967-017-5294-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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44
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Clémancey M, Cantat T, Blondin G, Latour JM, Dorlet P, Lefèvre G. Structural Insights into the Nature of Fe0 and FeI Low-Valent Species Obtained upon the Reduction of Iron Salts by Aryl Grignard Reagents. Inorg Chem 2017; 56:3834-3848. [DOI: 10.1021/acs.inorgchem.6b02616] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Martin Clémancey
- Université Grenoble Alpes, LCBM/PMB and CEA, BIG/CBM/PMB and CNRS, LCBM UMR 5249, PMB, 38000 Grenoble, France
| | - Thibault Cantat
- NIMBE, CEA, CNRS, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Geneviève Blondin
- Université Grenoble Alpes, LCBM/PMB and CEA, BIG/CBM/PMB and CNRS, LCBM UMR 5249, PMB, 38000 Grenoble, France
| | - Jean-Marc Latour
- Université Grenoble Alpes, LCBM/PMB and CEA, BIG/CBM/PMB and CNRS, LCBM UMR 5249, PMB, 38000 Grenoble, France
| | - Pierre Dorlet
- Institute
for Integrative Biology of the Cell (I2BC), CEA, CNRS, Univ. Paris-Sud, Université Paris-Saclay, Gif-sur-Yvette, France
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45
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Patra R, Coin G, Castro L, Dubourdeaux P, Clémancey M, Pécaut J, Lebrun C, Maldivi P, Latour JM. Rational design of Fe catalysts for olefin aziridination through DFT-based mechanistic analysis. Catal Sci Technol 2017. [DOI: 10.1039/c7cy01283g] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Experimental and DFT-based mechanistic studies are used to optimise Fe catalysts for aziridination.
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46
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Rugg G, Senn HM. Formation and structure of the ferryl [FeO] intermediate in the non-haem iron halogenase SyrB2: classical and QM/MM modelling agree. Phys Chem Chem Phys 2017; 19:30107-30119. [DOI: 10.1039/c7cp05937j] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
All O2 activation roads for three substrates and three spin states in SyrB2 lead to the same [FeO] structure.
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Affiliation(s)
- G. Rugg
- WestCHEM and School of Chemistry
- University of Glasgow
- Glasgow G12 8QQ
- UK
| | - H. M. Senn
- WestCHEM and School of Chemistry
- University of Glasgow
- Glasgow G12 8QQ
- UK
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47
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Kaneko M, Watanabe M, Miyashita S, Nakashima S. Bonding Study on Trivalent Europium Complexes by Combining Mössbauer Isomer Shifts with Density Functional Calculations. ACTA ACUST UNITED AC 2017. [DOI: 10.3769/radioisotopes.66.289] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- Masashi Kaneko
- Nuclear Science and Engineering Center, Japan Atomic Energy Agency
| | | | | | - Satoru Nakashima
- Graduate School of Science, Hiroshima University
- Natural Science Center for Basic Research and Development, Hiroshima University
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48
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Dohn AO, Kjær KS, Harlang TB, Canton SE, Nielsen MM, Møller KB. Electron Transfer and Solvent-Mediated Electronic Localization in Molecular Photocatalysis. Inorg Chem 2016; 55:10637-10644. [DOI: 10.1021/acs.inorgchem.6b01840] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Asmus O. Dohn
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs Lyngby, Denmark
| | - Kasper S. Kjær
- Department of Physics, Technical University of Denmark, Building 307 2800 Kgs. Lyngby, Denmark
| | - Tobias B. Harlang
- Department of Physics, Technical University of Denmark, Building 307 2800 Kgs. Lyngby, Denmark
| | - Sophie E. Canton
- Center for
Ultrafast Imaging, University of Hamburg, 22761 Hamburg, Germany
| | - Martin M. Nielsen
- Department of Physics, Technical University of Denmark, Building 307 2800 Kgs. Lyngby, Denmark
| | - Klaus B. Møller
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs Lyngby, Denmark
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49
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Mono- and binuclear non-heme iron chemistry from a theoretical perspective. J Biol Inorg Chem 2016; 21:619-44. [DOI: 10.1007/s00775-016-1357-8] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2016] [Accepted: 04/29/2016] [Indexed: 10/21/2022]
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50
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Grandjean F, Long GJ. Comment on “Calibration of 57Fe Mössbauer constants by first principles” Phys. Chem. Chem. Phys., 2016, 18, 10201–10206. Phys Chem Chem Phys 2016; 18:26306-26309. [DOI: 10.1039/c6cp02950g] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The proportionality constant between the iron-57 Mössbauer isomer shift and the electron probablility density at the nucleus is reevaluated from the correct experimental isomer shifts.
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Affiliation(s)
- Fernande Grandjean
- Department of Chemistry
- Missouri University of Science and Technology
- University of Missouri
- Rolla
- USA
| | - Gary J. Long
- Department of Chemistry
- Missouri University of Science and Technology
- University of Missouri
- Rolla
- USA
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