1
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Wróbel P, Kubisiak P, Eilmes A. Hydrogen Bonding and Infrared Spectra of Ethyl-3-methylimidazolium Bis(trifluoromethylsulfonyl)imide/Water Mixtures: A View from Molecular Dynamics Simulations. J Phys Chem B 2022; 126:10922-10932. [PMID: 36516319 PMCID: PMC9806834 DOI: 10.1021/acs.jpcb.2c06947] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Simulations of ab initio molecular dynamics have been performed for mixtures of ethyl-3-methylimidazolium bis(trifluoromethylsulfonyl)imide (EMIM-TFSI) ionic liquid and water. Statistics of donors and acceptors of hydrogen bonds has revealed that with increasing water content, hydrogen bonds between EMIM cations and TFSI anions are replaced by bonds to water molecules. In the mixture of liquids, the total number of bonds (from EMIM cations or water molecules) formed by TFSI acceptors increases. IR spectra obtained from ab initio molecular dynamics trajectories are in good agreement with literature data for ionic liquid/water systems. Analysis of oscillations of individual C-H and O-H bonds has shown correlations between vibrational frequencies and hydrogen bonds formed by an EMIM cation or water molecule and has indicated that the changes in the IR spectrum result from the decreased number of water-water hydrogen bonds in the mixture. The tests of DFTB methodology with tailored parameterizations have yielded reasonably good description of the IR spectrum of bulk water, whereas available parameterizations have failed in satisfactory reproduction of the IR spectrum of EMIM-TFSI/water mixtures in the region above 3000 cm-1.
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2
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Shaikh AR, Posada-Pérez S, Brotons-Rufes A, Pajski JJ, Vajiha, Kumar G, Mateen A, Poater A, Solà M, Chawla M, Cavallo L. Selective absorption of H2S and CO2 by azole based protic ionic liquids: A combined density functional theory and molecular dynamics study. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120558] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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3
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Gregory KP, Elliott GR, Wanless EJ, Webber GB, Page AJ. A quantum chemical molecular dynamics repository of solvated ions. Sci Data 2022; 9:430. [PMID: 35864118 PMCID: PMC9304403 DOI: 10.1038/s41597-022-01527-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2022] [Accepted: 06/30/2022] [Indexed: 12/29/2022] Open
Abstract
The importance of ion-solvent interactions in predicting specific ion effects in contexts ranging from viral activity through to electrolyte viscosity cannot be underestimated. Moreover, investigations of specific ion effects in nonaqueous systems, highly relevant to battery technologies, biochemical systems and colloid science, are severely limited by data deficiency. Here, we report IonSolvR – a collection of more than 3,000 distinct nanosecond-scale ab initio molecular dynamics simulations of ions in aqueous and non-aqueous solvent environments at varying effective concentrations. Density functional tight binding (DFTB) is used to detail the solvation structure of up to 55 solutes in 28 different protic and aprotic solvents. DFTB is a fast quantum chemical method, and as such enables us to bridge the gap between efficient computational scaling and maintaining accuracy, while using an internally-consistent simulation technique. We validate the database against experimental data and provide guidance for accessing individual IonSolvR records. Measurement(s) | solvation structure | Technology Type(s) | quantum chemistry computational method • Molecular Dynamics |
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Affiliation(s)
- Kasimir P Gregory
- Discipline of Chemistry, School of Environmental & Life Sciences, University of Newcastle, Callaghan, NSW, 2308, Australia.,Department of Materials Physics, Research School of Physics, Australian National University, Canberra, ACT, 0200, Australia
| | - Gareth R Elliott
- Discipline of Chemistry, School of Environmental & Life Sciences, University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Erica J Wanless
- Discipline of Chemistry, School of Environmental & Life Sciences, University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Grant B Webber
- Discipline of Chemical Engineering, School of Engineering, University of Newcastle, Callaghan, NSW, 2308, Australia
| | - Alister J Page
- Discipline of Chemistry, School of Environmental & Life Sciences, University of Newcastle, Callaghan, NSW, 2308, Australia.
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4
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Rozas S, Atilhan M, Aparicio S. A density functional theory based tight-binding study on the water effect on nanostructuring of choline chloride + ethylene glycol deep eutectic solvent. J Chem Phys 2022; 156:204506. [DOI: 10.1063/5.0091665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The effect of water on the properties of an archetypical type III deep eutectic solvent [choline chloride : ethyleneglycol (1:2)] is analyzed using ab initio molecular dynamics simulations in the 0 to 60 wt. % water content range. The properties of the mixed fluids are studied considering nanostructuring, intermolecular forces (hydrogen bonding), the energy of interactions, dynamic properties, and domain analysis. The reported results confirm that the change in the properties of the studied deep eutectic solvent is largely dependent on the amount of water. The competing effect of water molecules for the available hydrogen bonding sites determines the evolution of the properties upon water sorption. The main structural features of the considered deep eutectic were maintained even for large water contents; thus, its hydrophilicity could be used for tuning fluid physicochemical properties.
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Affiliation(s)
- Sara Rozas
- Department of Chemistry, University of Burgos, 09001 Burgos, Spain
| | - Mert Atilhan
- Department of Chemical and Paper Engineering, Western Michigan University, Kalamazoo, Michigan 49008-5462, USA
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5
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Li Y, Wang D, Fu F, Xia Q, Li W, Li S. Structures and properties of ionic crystals and condensed phase ionic liquids predicted with the generalized energy-based fragmentation method. J Comput Chem 2022; 43:704-716. [PMID: 35213748 DOI: 10.1002/jcc.26828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Revised: 01/20/2022] [Accepted: 01/21/2022] [Indexed: 11/11/2022]
Abstract
The generalized energy-based fragmentation (GEBF) approach is extended to facilitate ab initio investigations of structures, lattice energies, vibrational spectra and 1 H NMR chemical shifts of ionic crystals and condensed-phase ionic liquids (ILs) with the periodic boundary conditions (PBC). For selected periodic systems, our results demonstrate that the so-called PBC-GEBF approach can provide satisfactory descriptions on ground-state energies, structures, and vibrational spectra of ionic crystals and IL crystals. The PBC-GEBF approach is then applied to three realistic condensed phase systems. For three ionic crystals (LiCl, NaCl, and KCl), we apply the PBC-GEBF approach with MP2 theory as well as some popular DFT methods to investigate their crystal structures and lattice energies. Our calculations indicate that the crystal structures obtained with PBC-GEBF-MP2/6-311 + G** are very close to the corresponding X-ray structures, while PBC-GEBF-ωB97X-D/6-311 + G** provides satisfactory prediction for crystal structures and lattice energies. For two polymorphs of [n-C4 mim][Cl] crystals, we find that the PBC-GEBF approach at the M06-2X/6-311 + G** level can give a satisfactory descriptions on structures and Raman spectra of these two crystals. Furthermore, for [C2 mim][BF4 ] ILs, we demonstrate that their 1 H NMR chemical shifts can be estimated from averaging over 5 typical snapshots (extracted from MD simulations) with the PBC-GEBF approach at the B97-2/pcSseg-2 level. The calculated results account for the observed experimental data quite well. Therefore, we expect that the PBC-GEBF approach, combined with various quantum chemistry methods, will become an effective tool in predicting structures and properties of ionic crystals and condensed-phase ILs.
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Affiliation(s)
- Yunzhi Li
- School of Chemistry and Chemical Engineering, Linyi University, Linyi, China.,School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing, China
| | - Dong Wang
- School of Chemistry and Chemical Engineering, Linyi University, Linyi, China
| | - Fangjia Fu
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing, China
| | - Qiying Xia
- School of Chemistry and Chemical Engineering, Linyi University, Linyi, China
| | - Wei Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing, China
| | - Shuhua Li
- School of Chemistry and Chemical Engineering, Key Laboratory of Mesoscopic Chemistry of Ministry of Education, Institute of Theoretical and Computational Chemistry, Nanjing University, Nanjing, China
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6
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Khanal R, Irle S. Quantum chemical investigation of the effect of alkali metal ions on the dynamic structure of water in aqueous solutions. RSC Adv 2022; 12:25500-25510. [PMID: 36275866 PMCID: PMC9480497 DOI: 10.1039/d2ra04563j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2022] [Accepted: 08/26/2022] [Indexed: 11/21/2022] Open
Abstract
Cation size primarily governs dynamic correlations in aqueous solutions. However, drawing a clear line between chaotropic and cosmotrope ions is complicated by the fact that all cations delay dynamic correlation decay.
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Affiliation(s)
- Rabi Khanal
- Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, 37831, USA
| | - Stephan Irle
- Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, 37831, USA
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7
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Bodo E. Modelling biocompatible ionic liquids based on organic acids and amino acids: challenges for computational models and future perspectives. Org Biomol Chem 2021; 19:4002-4013. [PMID: 33978045 DOI: 10.1039/d1ob00011j] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this short review I shall highlight the basic principle and the difficulties that arise in attempting the computational modeling of seemingly simple systems which hide an unexpected complexity. Biocompatible ionic liquids which are based on the coupling of organic or amino acid anions with metabolic cations such as cholinium are the target of this review. These substances have been the subject of intense research activities in the last few years and have attracted the attention of computational chemists. I shall show that the computational description of these substances is far from trivial and requires the use of sophisticated techniques in order to account for a surprisingly rich chemistry that is due to several phenomena such as polarization, charge transfer, proton transfer equilibria and tautomerization reactions.
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Affiliation(s)
- Enrico Bodo
- Chemistry Department, University of Rome "La Sapienza", P. A. Moro 5, 00185 Rome, Italy.
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8
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Bodo E, Bonomo M, Mariani A. Assessing the Structure of Protic Ionic Liquids Based on Triethylammonium and Organic Acid Anions. J Phys Chem B 2021; 125:2781-2792. [PMID: 33719447 PMCID: PMC8041315 DOI: 10.1021/acs.jpcb.1c00249] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
![]()
We present a computational
analysis of the short-range structure
of three protic ionic liquids based on strong organic acids: trifluoracetate,
methanesulfonate, and triflate of triethylammonium. Accurate ab initio computations carried out on the gas-phase dimers
show that the protonation of triethylamine is spontaneous. We have
identified the anion-cation binding motif that is due to the presence
of a strong hydrogen bond and to electrostatic interactions. The strength
of the hydrogen bond and the magnitude of the binding energy decrease
in the order trifluoroacetate ≳ methanesulfonate > triflate.
The corresponding simulations of the bulk phases, obtained using a
semiempirical evaluation of the interatomic forces, reveal that on
short timescales, the state of the three liquids remains highly ionized
and that the gas-phase cation-/anion-binding motif is preserved while
no other peculiar structural features seem to emerge.
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Affiliation(s)
- Enrico Bodo
- Chemistry Department, University of Rome "La Sapienza", Piazzale A. Moro 5, 00185 Rome, Italy
| | - Matteo Bonomo
- Chemistry Department, University of Rome "La Sapienza", Piazzale A. Moro 5, 00185 Rome, Italy.,Department of Chemistry, NIS Interdepartmental Centre, INSTM Reference Centre, University of Turin, Via Gioacchino Quarello 15/A, 10125 Turin, Italy
| | - Alessandro Mariani
- Chemistry Department, University of Rome "La Sapienza", Piazzale A. Moro 5, 00185 Rome, Italy.,Helmholtz Institute Ulm (HIU), Helmholtzstrasse 11, Ulm 89081, Germany.,Karlsruhe Institute of Technology (KIT), P.O. Box 3640, Karlsruhe 76021, Germany
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9
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Shmukler L, Fedorova I, Fadeeva YA, Safonova L. The physicochemical properties and structure of alkylammonium protic ionic liquids of RnH4-nNX (n = 1–3) family. A mini–review. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2020.114350] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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10
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Abe H, Koyama Y, Kishimura H, Matsuishi K. High-pressure crystal polymorph of the protic ionic liquid: Ethylammonium nitrate. J Mol Liq 2020. [DOI: 10.1016/j.molliq.2020.113959] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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11
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Cuny J, Cerda Calatayud J, Ansari N, Hassanali AA, Rapacioli M, Simon A. Simulation of Liquids with the Tight-Binding Density-Functional Approach and Improved Atomic Charges. J Phys Chem B 2020; 124:7421-7432. [PMID: 32696649 DOI: 10.1021/acs.jpcb.0c04167] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Theoretical description of liquids, especially liquid water, is an ongoing subject with important implications in various domains such as homogeneous catalysis; solvation of molecular, ionic, and biomolecular species; and reactivity. Various formalisms exist to describe liquids, each one displaying its own balance between accuracy and computational cost that defines its range of applications. The present article revisits the ability of the density-functional-based tight-binding (SCC-DFTB) approach to model liquids by focusing on liquid water and liquid benzene under ambient conditions. To do so, we benchmark a recent correction for the SCC-DFTB atomic charges that allows for a drastic improvement of the pair radial distribution functions of liquid water as compared to both experimental data and density-functional theory results performed in the generalized-gradient approximation. We also report the coupling of the deMonNano and i-PI codes to perform path-integral molecular dynamics. This allows us to rationalize the impact of nuclear quantum effects on the SCC-DFTB description of liquid water. This study evidences the rather good ability of SCC-DFTB to describe liquid water and liquid benzene. As the first example of application, we also present results for a benzene molecule solvated in water with the perspectives of further studies devoted to solvent/water interfaces.
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Affiliation(s)
- Jérôme Cuny
- Laboratoire de Chimie et Physique Quantiques (LCPQ), Université de Toulouse III [UPS] and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Jesus Cerda Calatayud
- Laboratoire de Chimie et Physique Quantiques (LCPQ), Université de Toulouse III [UPS] and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Narjes Ansari
- The Abdus Salam International Center for Theoretical Physics, Condensed Matter and Statistical Physics Section, Strada Costiera 11, 34151 Trieste, Italy.,Department of Chemistry and Applied Biosciences, ETH Zurich, 3 c/o USI Campus, Via Giuseppe Buffi13, 6900 Lugano, Switzerland.,Facoltà di informatica, Istituto di Scienze Computazionali, Università della Svizzera Italiana, CH-6900 Lugano, Switzerland
| | - Ali A Hassanali
- The Abdus Salam International Center for Theoretical Physics, Condensed Matter and Statistical Physics Section, Strada Costiera 11, 34151 Trieste, Italy
| | - Mathias Rapacioli
- Laboratoire de Chimie et Physique Quantiques (LCPQ), Université de Toulouse III [UPS] and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
| | - Aude Simon
- Laboratoire de Chimie et Physique Quantiques (LCPQ), Université de Toulouse III [UPS] and CNRS, 118 Route de Narbonne, F-31062 Toulouse, France
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12
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Wang YL, Li B, Sarman S, Mocci F, Lu ZY, Yuan J, Laaksonen A, Fayer MD. Microstructural and Dynamical Heterogeneities in Ionic Liquids. Chem Rev 2020; 120:5798-5877. [PMID: 32292036 PMCID: PMC7349628 DOI: 10.1021/acs.chemrev.9b00693] [Citation(s) in RCA: 189] [Impact Index Per Article: 47.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2019] [Indexed: 12/11/2022]
Abstract
Ionic liquids (ILs) are a special category of molten salts solely composed of ions with varied molecular symmetry and charge delocalization. The versatility in combining varied cation-anion moieties and in functionalizing ions with different atoms and molecular groups contributes to their peculiar interactions ranging from weak isotropic associations to strong, specific, and anisotropic forces. A delicate interplay among intra- and intermolecular interactions facilitates the formation of heterogeneous microstructures and liquid morphologies, which further contributes to their striking dynamical properties. Microstructural and dynamical heterogeneities of ILs lead to their multifaceted properties described by an inherent designer feature, which makes ILs important candidates for novel solvents, electrolytes, and functional materials in academia and industrial applications. Due to a massive number of combinations of ion pairs with ion species having distinct molecular structures and IL mixtures containing varied molecular solvents, a comprehensive understanding of their hierarchical structural and dynamical quantities is of great significance for a rational selection of ILs with appropriate properties and thereafter advancing their macroscopic functionalities in applications. In this review, we comprehensively trace recent advances in understanding delicate interplay of strong and weak interactions that underpin their complex phase behaviors with a particular emphasis on understanding heterogeneous microstructures and dynamics of ILs in bulk liquids, in mixtures with cosolvents, and in interfacial regions.
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Affiliation(s)
- Yong-Lei Wang
- Department
of Materials and Environmental Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Bin Li
- School
of Chemical Engineering and Technology, Sun Yat-sen University, Zhuhai 519082, P. R. China
| | - Sten Sarman
- Department
of Materials and Environmental Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Francesca Mocci
- Department
of Chemical and Geological Sciences, University
of Cagliari, I-09042 Monserrato, Italy
| | - Zhong-Yuan Lu
- State
Key Laboratory of Supramolecular Structure and Materials, Institute
of Theoretical Chemistry, Jilin University, Changchun 130021, P. R. China
| | - Jiayin Yuan
- Department
of Materials and Environmental Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden
| | - Aatto Laaksonen
- Department
of Materials and Environmental Chemistry, Arrhenius Laboratory, Stockholm University, SE-106 91 Stockholm, Sweden
- State
Key Laboratory of Materials-Oriented and Chemical Engineering, Nanjing Tech University, Nanjing 210009, P. R. China
- Centre of
Advanced Research in Bionanoconjugates and Biopolymers, Petru Poni Institute of Macromolecular Chemistry Aleea Grigore Ghica-Voda, 41A, 700487 Iasi, Romania
- Department
of Engineering Sciences and Mathematics, Division of Energy Science, Luleå University of Technology, SE-97187 Luleå, Sweden
| | - Michael D. Fayer
- Department
of Chemistry, Stanford University, Stanford, California 94305, United States
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13
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Theoretical Insights into the Structure of the Aminotris(Methylenephosphonic Acid) (ATMP) Anion: A Possible Partner for Conducting Ionic Media. Symmetry (Basel) 2020. [DOI: 10.3390/sym12060920] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
We present a computational characterisation of Aminotris(methylenephosphonic acid) (ATMP) and its potential use as an anionic partner for conductive ionic liquids (ILs). We argue that for an IL to be a good candidate for a conducting medium, two conditions must be fulfilled: (i) the charge must be transported by light carriers; and (ii) the system must maintain a high degree of ionisation. The result trends presented herein show that there are molecular ion combinations that do comply with these two criteria, regardless of the specific system used. ATMP is a symmetric molecule with a total of six protons. In the bulk phase, breaking the symmetry of the fully protonated state and creating singly and doubly charged anions induces proton transfer mechanisms. To demonstrate this, we used molecular dynamics (MD) simulations employing a variable topology approach based on the reasonably reliable semiempirical density functional tight binding (DFTB) evaluation of the atomic forces. We show that, by choosing common and economical starting compounds, we can devise a viable prototype for a highly conductive medium where charge transfer is achieved by proton motion.
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14
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Sakti A, Chou CP, Nakai H. Density-Functional Tight-Binding Study of Carbonaceous Species Diffusion on the (100)-γ-Al 2O 3 Surface. ACS OMEGA 2020; 5:6862-6871. [PMID: 32258922 PMCID: PMC7114690 DOI: 10.1021/acsomega.0c00203] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 03/05/2020] [Indexed: 05/17/2023]
Abstract
Carbonaceous or oxy-carbon species are intermediates formed during C x H y combustion on a Pt n /Al2O3 catalyst, which contain carbon, hydrogen, and oxygen atoms. The accumulation of the carbonaceous species, arguably, leads to catalytic deactivation; therefore, their removal is of importance. As the diffusion process is occasionally the rate-determining step in the growth of carbonaceous species, the present study aims to reveal the diffusion mechanisms. The free energy barriers of acetate, formate, and methoxy diffusion on the (100)-γ-Al2O3 surface were evaluated through extensive metadynamics simulations at the density-functional tight-binding level. The present work deduces that each adopted carbonaceous species exhibits different diffusion mechanisms and supports experimental evidence that the acetate species exhibits the slowest diffusivity among the adopted carbonaceous species.
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Affiliation(s)
- Aditya
W. Sakti
- Element
Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Kyotodaigaku-Katsura, Kyoto 615-8520, Japan
- Waseda
Research Institute for Science and Engineering (WISE), Waseda University, Tokyo 169-8555, Japan
| | - Chien-Pin Chou
- Waseda
Research Institute for Science and Engineering (WISE), Waseda University, Tokyo 169-8555, Japan
| | - Hiromi Nakai
- Element
Strategy Initiative for Catalysts and Batteries (ESICB), Kyoto University, Kyotodaigaku-Katsura, Kyoto 615-8520, Japan
- Waseda
Research Institute for Science and Engineering (WISE), Waseda University, Tokyo 169-8555, Japan
- Department
of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, Tokyo 169-8555, Japan
- E-mail: . Phone: +81 3-5286-3452. Fax: +81 3-3205-2504
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15
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Structural Features of Triethylammonium Acetate through Molecular Dynamics. Molecules 2020; 25:molecules25061432. [PMID: 32245229 PMCID: PMC7146455 DOI: 10.3390/molecules25061432] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Accepted: 03/19/2020] [Indexed: 12/13/2022] Open
Abstract
I have explored the structural features and the dynamics of triethylammonium acetate by means of semi-empirical (density functional tight binding, DFTB) molecular dynamics. I find that the results from the present simulations agree with recent experimental determinations with only few minor differences in the structural interpretation. A mixture of triethylamine and acetic acid does not form an ionic liquid, but gives rise to a very complex system where ionization is only a partial process affecting only few molecules (1 over 4 experimentally). I have also found that the few ionic couples are stable and remain mainly embedded inside the AcOH neutral moiety.
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16
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Spiegelman F, Tarrat N, Cuny J, Dontot L, Posenitskiy E, Martí C, Simon A, Rapacioli M. Density-functional tight-binding: basic concepts and applications to molecules and clusters. ADVANCES IN PHYSICS: X 2020; 5:1710252. [PMID: 33154977 PMCID: PMC7116320 DOI: 10.1080/23746149.2019.1710252] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2019] [Accepted: 12/19/2019] [Indexed: 06/10/2023] Open
Abstract
The scope of this article is to present an overview of the Density Functional based Tight Binding (DFTB) method and its applications. The paper introduces the basics of DFTB and its standard formulation up to second order. It also addresses methodological developments such as third order expansion, inclusion of non-covalent interactions, schemes to solve the self-interaction error, implementation of long-range short-range separation, treatment of excited states via the time-dependent DFTB scheme, inclusion of DFTB in hybrid high-level/low level schemes (DFT/DFTB or DFTB/MM), fragment decomposition of large systems, large scale potential energy landscape exploration with molecular dynamics in ground or excited states, non-adiabatic dynamics. A number of applications are reviewed, focusing on -(i)- the variety of systems that have been studied such as small molecules, large molecules and biomolecules, bare orfunctionalized clusters, supported or embedded systems, and -(ii)- properties and processes, such as vibrational spectroscopy, collisions, fragmentation, thermodynamics or non-adiabatic dynamics. Finally outlines and perspectives are given.
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Affiliation(s)
- Fernand Spiegelman
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
| | - Nathalie Tarrat
- CEMES, Université de Toulouse (UPS), CNRS, UPR8011, Toulouse, Toulouse, France
| | - Jérôme Cuny
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
| | - Leo Dontot
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
| | - Evgeny Posenitskiy
- Laboratoire Collisions Agrégats et Réactivité LCAR/IRSAMC, UMR5589, Université de Toulouse (UPS) and CNRS, Toulouse, France
| | - Carles Martí
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
- Laboratoire de Chimie, UMR5182, Ecole Normale Supérieure de Lyon, Université de Lyon and CNRS, Lyon, France
| | - Aude Simon
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
| | - Mathias Rapacioli
- Laboratoire de Chimie et Physique Quantiques LCPQ/IRSAMC, UMR5626, Université de Toulouse (UPS)and CNRS, Toulouse, France
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17
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Mihalovits LM, Ferenczy GG, Keserű GM. Catalytic Mechanism and Covalent Inhibition of UDP- N-Acetylglucosamine Enolpyruvyl Transferase (MurA): Implications to the Design of Novel Antibacterials. J Chem Inf Model 2019; 59:5161-5173. [PMID: 31715096 DOI: 10.1021/acs.jcim.9b00691] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
UDP-N-acetylglucosamine enolpyruvyl transferase (MurA) catalyzes the first step in the biosynthesis of the bacterial cell wall. This pathway is essential for the growth of bacteria but missing in mammals, that nominates MurA as an attractive antibacterial target. MurA has a flexible loop whose conformational change is known to be part of the activation mechanism of the enzyme. We have shown that the loop closed conformation makes the proton transfer from Cys115 to His394 possible by a low barrier exothermic process. QM/MM MD simulations revealed that the activated thiolate is able to react with phosphoenolpyruvate (PEP), the natural substrate of MurA. The binding free energy profile of several covalent inhibitors with various warheads reacting with the activated Cys115 was calculated by QM/MM MD simulations and confirmed that reaction barrier heights tend to separate active from inactive compounds. Our results give new insight into the catalytic mechanism and covalent inhibition of MurA and suggest that QM/MM MD simulations are able to support ligand design by providing sensible relative free energy barriers for covalent inhibitors with various warheads reacting with thiolate nucleophiles.
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Affiliation(s)
- Levente M Mihalovits
- Medicinal Chemistry Research Group , Research Centre for Natural Sciences , Magyar tudósok körútja 2 , Budapest 1117 , Hungary
| | - György G Ferenczy
- Medicinal Chemistry Research Group , Research Centre for Natural Sciences , Magyar tudósok körútja 2 , Budapest 1117 , Hungary
| | - György M Keserű
- Medicinal Chemistry Research Group , Research Centre for Natural Sciences , Magyar tudósok körútja 2 , Budapest 1117 , Hungary
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18
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Červinka C, Klajmon M, Štejfa V. Cohesive Properties of Ionic Liquids Calculated from First Principles. J Chem Theory Comput 2019; 15:5563-5578. [DOI: 10.1021/acs.jctc.9b00625] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ctirad Červinka
- Department of Physical Chemistry, University of Chemistry and Technology Prague, Technická 5, CZ-166 28 Prague 6, Czech Republic
| | - Martin Klajmon
- Department of Physical Chemistry, University of Chemistry and Technology Prague, Technická 5, CZ-166 28 Prague 6, Czech Republic
| | - Vojtěch Štejfa
- Department of Physical Chemistry, University of Chemistry and Technology Prague, Technická 5, CZ-166 28 Prague 6, Czech Republic
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19
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Fernández-Quintero ML, Kraml J, Georges G, Liedl KR. CDR-H3 loop ensemble in solution - conformational selection upon antibody binding. MAbs 2019; 11:1077-1088. [PMID: 31148507 PMCID: PMC6748594 DOI: 10.1080/19420862.2019.1618676] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
We analyzed pairs of protein-binding, peptide-binding and hapten-binding antibodies crystallized as complex and in the absence of the antigen with and without conformational differences upon binding in the complementarity-determining region (CDR)-H3 loop. Here, we introduce a molecular dynamics-based approach to capture a diverse conformational ensemble of the CDR-H3 loop in solution. The results clearly indicate that the inherently flexible CDR-H3 loop indeed needs to be characterized as a conformational ensemble. The conformational changes of the CDR-H3 loop in all antibodies investigated follow the paradigm of conformation selection, because we observe the experimentally determined binding competent conformation without the presence of the antigen within the ensemble of pre-existing conformational states in solution before binding. We also demonstrate for several examples that the conformation observed in the antibody crystal structure without antigen present is actually selected to bind the carboxyterminal tail region of the antigen-binding fragment (Fab). Thus, special care must be taken when characterizing antibody CDR-H3 loops by Fab X-ray structures, and the possibility that pre-existing conformations are present should always be considered.
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Affiliation(s)
- Monica L Fernández-Quintero
- a Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck , Innsbruck , Austria
| | - Johannes Kraml
- a Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck , Innsbruck , Austria
| | - Guy Georges
- b Roche Pharma Research and Early Development, Large Molecule Research, Roche Innovation Center Munich , Penzberg , Germany
| | - Klaus R Liedl
- a Institute of General, Inorganic and Theoretical Chemistry, and Center for Molecular Biosciences Innsbruck (CMBI), University of Innsbruck , Innsbruck , Austria
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20
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Stefanovic R, Webber GB, Page AJ. Polymer solvation in choline chloride deep eutectic solvents modulated by the hydrogen bond donor. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.02.004] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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21
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Stefanovic R, Webber GB, Page AJ. Nanostructure of propylammonium nitrate in the presence of poly(ethylene oxide) and halide salts. J Chem Phys 2018; 148:193826. [DOI: 10.1063/1.5012801] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Affiliation(s)
- Ryan Stefanovic
- Priority Research Centre for Particle Processing and Transport, Newcastle Institute for Energy and Resources, The University of Newcastle, Callaghan, NSW 2308, Australia
- Priority Research Centre for Frontier Energy Technologies and Utilisation, Newcastle Institute for Energy and Resources, The University of Newcastle, Callaghan, NSW 2308, Australia
| | - Grant B. Webber
- Priority Research Centre for Particle Processing and Transport, Newcastle Institute for Energy and Resources, The University of Newcastle, Callaghan, NSW 2308, Australia
| | - Alister J. Page
- Priority Research Centre for Frontier Energy Technologies and Utilisation, Newcastle Institute for Energy and Resources, The University of Newcastle, Callaghan, NSW 2308, Australia
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22
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Waite SL, Li H, Page AJ. NO2 Solvation Structure in Choline Chloride Deep Eutectic Solvents—The Role of the Hydrogen Bond Donor. J Phys Chem B 2018; 122:4336-4344. [DOI: 10.1021/acs.jpcb.8b01508] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Simone L. Waite
- School of Environmental & Life Sciences, The University of Newcastle, Callaghan, New South Wales 2308, Australia
| | - Hua Li
- School of Environmental & Life Sciences, The University of Newcastle, Callaghan, New South Wales 2308, Australia
| | - Alister J. Page
- School of Environmental & Life Sciences, The University of Newcastle, Callaghan, New South Wales 2308, Australia
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23
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Li Y, Yuan D, Wang Q, Li W, Li S. Accurate prediction of the structure and vibrational spectra of ionic liquid clusters with the generalized energy-based fragmentation approach: critical role of ion-pair-based fragmentation. Phys Chem Chem Phys 2018; 20:13547-13557. [DOI: 10.1039/c8cp00513c] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The GEBF method with the ion-pair-based fragmentation has been developed to facilitate ab initio calculations of general ionic liquid clusters.
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Affiliation(s)
- Yunzhi Li
- School of Chemistry and Chemical Engineering
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education
- Institute of Theoretical and Computational Chemistry
- Nanjing University
- Nanjing
| | - Dandan Yuan
- School of Chemistry and Chemical Engineering
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education
- Institute of Theoretical and Computational Chemistry
- Nanjing University
- Nanjing
| | - Qingchun Wang
- School of Chemistry and Chemical Engineering
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education
- Institute of Theoretical and Computational Chemistry
- Nanjing University
- Nanjing
| | - Wei Li
- School of Chemistry and Chemical Engineering
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education
- Institute of Theoretical and Computational Chemistry
- Nanjing University
- Nanjing
| | - Shuhua Li
- School of Chemistry and Chemical Engineering
- Key Laboratory of Mesoscopic Chemistry of Ministry of Education
- Institute of Theoretical and Computational Chemistry
- Nanjing University
- Nanjing
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24
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Chen H, Chen X, Deng J, Zheng J. Isotropic ordering of ions in ionic liquids on the sub-nanometer scale. Chem Sci 2017; 9:1464-1472. [PMID: 29675192 PMCID: PMC5890800 DOI: 10.1039/c7sc05184k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Accepted: 12/22/2017] [Indexed: 11/21/2022] Open
Abstract
This article investigates structures of ionic liquids. Using a high-powered multiple-mode two dimensional infrared spectroscopic technique, we measure the anisotropy of interionic vibrational coupling in ionic liquids. Such anisotropy reports the relative orientation between cations and anions. Surprisingly, opposite to the well-propagated idea of ion pairing, a random orientation between the nearest non-spherically symmetric cation and anion is observed in ionic liquids. On the one hand, numerous previous experiments and theoretical calculations have shown that ionic liquids are highly ordered at the mesoscale, forming a bicontinuous nanostructure of ionic domains and hydrophobic domains. On the other hand, our results clearly prove that the ion ordering within the ionic domains is essentially random. Such an ordering at the larger scale (nanometers) and a lack of ordering at the smaller scale (sub-nanometer) is very rare for most liquids, or may even be unique to ionic liquids. Herein, we propose that ionic liquids may be regarded as 3D interconnecting nanocomposites of molten-salt-like domains and molecular-liquid-like domains. Such unique structuring could explain the fact that ionic liquids, like composite materials, often possess favorable properties of both "ionic" and "molecular" components.
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Affiliation(s)
- Hailong Chen
- Beijing National Laboratory for Condensed Matter Physics , CAS Key Laboratory of Soft Matter Physics , Institute of Physics , Chinese Academy of Sciences , Beijing 100190 , China
| | - Xin Chen
- College of Chemistry and Molecular Engineering , Beijing National Laboratory for Molecular Sciences , Peking University , Beijing 100871 , China . ;
| | - Jingwen Deng
- College of Chemistry and Molecular Engineering , Beijing National Laboratory for Molecular Sciences , Peking University , Beijing 100871 , China . ;
| | - Junrong Zheng
- College of Chemistry and Molecular Engineering , Beijing National Laboratory for Molecular Sciences , Peking University , Beijing 100871 , China . ;
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25
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26
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Izgorodina EI, Seeger ZL, Scarborough DLA, Tan SYS. Quantum Chemical Methods for the Prediction of Energetic, Physical, and Spectroscopic Properties of Ionic Liquids. Chem Rev 2017; 117:6696-6754. [PMID: 28139908 DOI: 10.1021/acs.chemrev.6b00528] [Citation(s) in RCA: 151] [Impact Index Per Article: 21.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The accurate prediction of physicochemical properties of condensed systems is a longstanding goal of theoretical (quantum) chemistry. Ionic liquids comprising entirely of ions provide a unique challenge in this respect due to the diverse chemical nature of available ions and the complex interplay of intermolecular interactions among them, thus resulting in the wide variability of physicochemical properties, such as thermodynamic, transport, and spectroscopic properties. It is well understood that intermolecular forces are directly linked to physicochemical properties of condensed systems, and therefore, an understanding of this relationship would greatly aid in the design and synthesis of functionalized materials with tailored properties for an application at hand. This review aims to give an overview of how electronic structure properties obtained from quantum chemical methods such as interaction/binding energy and its fundamental components, dipole moment, polarizability, and orbital energies, can help shed light on the energetic, physical, and spectroscopic properties of semi-Coulomb systems such as ionic liquids. Particular emphasis is given to the prediction of their thermodynamic, transport, spectroscopic, and solubilizing properties.
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Affiliation(s)
- Ekaterina I Izgorodina
- Monash Computational Chemistry Group, School of Chemistry, Monash University , 17 Rainforest Walk, Clayton, Victoria 3800, Australia
| | - Zoe L Seeger
- Monash Computational Chemistry Group, School of Chemistry, Monash University , 17 Rainforest Walk, Clayton, Victoria 3800, Australia
| | - David L A Scarborough
- Monash Computational Chemistry Group, School of Chemistry, Monash University , 17 Rainforest Walk, Clayton, Victoria 3800, Australia
| | - Samuel Y S Tan
- Monash Computational Chemistry Group, School of Chemistry, Monash University , 17 Rainforest Walk, Clayton, Victoria 3800, Australia
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27
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A network approach to unravel correlated ion pair dynamics in protic ionic liquids. The case of triethylammonium nitrate. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2016.06.094] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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28
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Stefanovic R, Ludwig M, Webber GB, Atkin R, Page AJ. Nanostructure, hydrogen bonding and rheology in choline chloride deep eutectic solvents as a function of the hydrogen bond donor. Phys Chem Chem Phys 2017; 19:3297-3306. [DOI: 10.1039/c6cp07932f] [Citation(s) in RCA: 194] [Impact Index Per Article: 27.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Ab initio MD and experiments are combined to reveal how the nanostructures in choline chloride deep eutectic solvents, and hence their properties, are modulated by the hydrogen bond donor structure.
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Affiliation(s)
- Ryan Stefanovic
- Priority Research Centre for Advanced Fluids and Interfaces
- The University of Newcastle
- Callaghan
- Australia
| | - Michael Ludwig
- Priority Research Centre for Advanced Fluids and Interfaces
- The University of Newcastle
- Callaghan
- Australia
| | - Grant B. Webber
- Priority Research Centre for Advanced Fluids and Interfaces
- The University of Newcastle
- Callaghan
- Australia
| | - Rob Atkin
- Priority Research Centre for Advanced Fluids and Interfaces
- The University of Newcastle
- Callaghan
- Australia
| | - Alister J. Page
- Priority Research Centre for Advanced Fluids and Interfaces
- The University of Newcastle
- Callaghan
- Australia
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29
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Zentel T, Kühn O. Hydrogen bonding in the protic ionic liquid triethylammonium nitrate explored by density functional tight binding simulations. J Chem Phys 2016; 145:234504. [DOI: 10.1063/1.4972006] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Tobias Zentel
- Institute of Physics, University of Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
| | - Oliver Kühn
- Institute of Physics, University of Rostock, Albert-Einstein-Str. 23-24, 18059 Rostock, Germany
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30
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Eilmes A, Kubisiak P. Explicit Solvent Modeling of Solvatochromic Probes in Ionic Liquids: Implications of Solvation Shell Structure. J Phys Chem B 2015; 119:13185-97. [DOI: 10.1021/acs.jpcb.5b07767] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Andrzej Eilmes
- Faculty
of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Kraków, Poland
| | - Piotr Kubisiak
- Faculty
of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Kraków, Poland
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31
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Ahubelem N, Shah K, Moghtaderi B, Page AJ. Quantum Chemical Molecular Dynamics Simulations of 1,3-Dichloropropene Combustion. J Phys Chem A 2015; 119:9307-16. [PMID: 26252869 DOI: 10.1021/acs.jpca.5b06446] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Oxidative decomposition of 1,3-dichloropropene was investigated using quantum chemical molecular dynamics (QM/MD) at 1500 and 3000 K. Thermal oxidation of 1,3-dichloropropene was initiated by (1) abstraction of allylic H/Cl by O2 and (2) intra-annular C-Cl bond scission and elimination of allylic Cl. A kinetic analysis shows that (2) is the more dominant initiation pathway, in agreement with QM/MD results. These QM/MD simulations reveal new routes to the formation of major products (H2O, CO, HCl, CO2), which are propagated primarily by the chloroperoxy (ClO2), OH, and 1,3-dichloropropene derived radicals. In particular, intra-annular C-C/C-H bond dissociation reactions of intermediate aldehydes/ketones are shown to play a dominant role in the formation of CO and CO2. Our simulations demonstrate that both combustion temperature and radical concentration can influence the product yield, however not the combustion mechanism.
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Affiliation(s)
- Nwakamma Ahubelem
- Newcastle Institute for Energy and Resources, The University of Newcastle , Callaghan, NSW 2308, Australia
| | - Kalpit Shah
- Newcastle Institute for Energy and Resources, The University of Newcastle , Callaghan, NSW 2308, Australia
| | - Behdad Moghtaderi
- Newcastle Institute for Energy and Resources, The University of Newcastle , Callaghan, NSW 2308, Australia
| | - Alister J Page
- Newcastle Institute for Energy and Resources, The University of Newcastle , Callaghan, NSW 2308, Australia
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32
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Affiliation(s)
- Robert Hayes
- Discipline
of Chemistry, The University of Newcastle, NSW 2308, Callaghan, Australia
| | - Gregory G. Warr
- School
of Chemistry, The University of Sydney, NSW 2006, Sydney, Australia
| | - Rob Atkin
- Discipline
of Chemistry, The University of Newcastle, NSW 2308, Callaghan, Australia
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33
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Keaveney ST, Harper JB, Croft AK. Computational approaches to understanding reaction outcomes of organic processes in ionic liquids. RSC Adv 2015. [DOI: 10.1039/c4ra14676j] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
The utility of using a combined experimental and computational approach for understanding ionic liquid media, and their effect on reaction outcome, is highlighted through a number of case studies.
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Affiliation(s)
| | - Jason B. Harper
- School of Chemistry
- University of New South Wales
- Sydney
- Australia
| | - Anna K. Croft
- Department of Chemical and Environmental Engineering
- University of Nottingham
- University Park
- Nottingham
- UK
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34
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Li H, Atkin R, Page AJ. Combined friction force microscopy and quantum chemical investigation of the tribotronic response at the propylammonium nitrate–graphite interface. Phys Chem Chem Phys 2015; 17:16047-52. [DOI: 10.1039/c5cp01952d] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
The energetic origins of the variation in friction with potential at the propylammonium nitrate–graphite interface are revealed using friction force microscopy (FFM) in combination with quantum chemical simulations.
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Affiliation(s)
- H. Li
- Newcastle Institute for Energy and Resources
- The University of Newcastle
- Callaghan
- Australia
| | - R. Atkin
- Newcastle Institute for Energy and Resources
- The University of Newcastle
- Callaghan
- Australia
| | - A. J. Page
- Newcastle Institute for Energy and Resources
- The University of Newcastle
- Callaghan
- Australia
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