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Ramanantoanina H, Merzoud L, Muya JT, Chermette H, Daul C. Electronic Structure and Photoluminescence Properties of Eu(η 9-C 9H 9) 2. J Phys Chem A 2020; 124:152-164. [PMID: 31769978 DOI: 10.1021/acs.jpca.9b09755] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The electronic structure of Eu2+ compounds results from a complex combination of strongly correlated electrons and relativistic effects as well as weak ligand-field interaction. There is tremendous interest in calculating the electronic structure as nowadays the Eu2+ ion is becoming more and more crucial, for instance, in lighting technologies. Recently, interest in semiempirical methods to qualitatively evaluate the electronic structure and to model the optical spectra has gained popularity, although the theoretical methods strongly rely upon empirical inputs, hindering their prediction capabilities. Besides, ab initio multireference models are computationally heavy and demand very elaborative theoretical background. Herein, application of the ligand-field density functional theory (LFDFT) method that is recently available in the Amsterdam Modeling Suite is shown: (i) to elucidate the electronic structure properties on the basis of the multiplet energy levels of Eu configurations 4f7 and 4f65d1 and (ii) to model the optical spectra quite accurately if compared to the conventional time-dependent density functional theory tool. We present a theoretical study of the molecular Eu(η9-C9H9)2 complex and its underlying photoluminescence properties with respect to the Eu 4f-5d electron transitions. We model the excitation and emission spectra with good agreement with the experiments, opening up the possibility of modeling lanthanides in complex environment like nanomaterials by means of LFDFT at much-reduced computational resources and cost.
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Affiliation(s)
| | - Lynda Merzoud
- Institut Sciences Analytiques , Université de Lyon, Université de Lyon 1, UMR CNRS 5280 , 5 rue de la Doua , 69100 Villeurbanne , France
| | - Jules Tshishimbi Muya
- Department of Chemistry , Hanyang University , 222 Wangsimni-ro , Seongdong-gu , Seoul 04763 , Republic of Korea.,Department of Chemistry, Faculty of Sciences , University of Kinshasa , Kinshasa , DR Congo
| | - Henry Chermette
- Institut Sciences Analytiques , Université de Lyon, Université de Lyon 1, UMR CNRS 5280 , 5 rue de la Doua , 69100 Villeurbanne , France
| | - Claude Daul
- Department of Chemistry , University of Fribourg , CH-1700 Fribourg , Switzerland
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Adeniyi AA, Soliman MES. Implementing QM in docking calculations: is it a waste of computational time? Drug Discov Today 2017; 22:1216-1223. [PMID: 28689054 DOI: 10.1016/j.drudis.2017.06.012] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2017] [Revised: 05/25/2017] [Accepted: 06/29/2017] [Indexed: 12/14/2022]
Abstract
The greatest challenge in molecular docking (MD) is the deficiency of scoring functions (SFs), which limits their reliability. SFs are too simplified to represent the true features of the complex free energy of protein-ligand interactions. Investigations of docking functions have traded accuracy for speed through the use of approximations and simplifications. Consequently, there has been an increase in the popularity of quantum-mechanical (QM)-based methods as reference points for the development of fast, reliable, valuable, yet inexpensive, tools. As we discuss here, one significant QM-based parameter used to predict docking is the accuracy of atomic partial charges, which is strongly related to the accuracy of the SF prediction.
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Affiliation(s)
- Adebayo A Adeniyi
- School of Health Sciences, University of KwaZulu-Natal, Westville, Durban 4001, South Africa.
| | - Mahmoud E S Soliman
- School of Health Sciences, University of KwaZulu-Natal, Westville, Durban 4001, South Africa.
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Cherry PJ, Rouf SA, Vaara J. Paramagnetic Enhancement of Nuclear Spin–Spin Coupling. J Chem Theory Comput 2017; 13:1275-1283. [DOI: 10.1021/acs.jctc.6b01080] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Peter John Cherry
- Institute of Inorganic
Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84536 Bratislava, Slovakia
| | - Syed Awais Rouf
- NMR Research Unit, University of Oulu, P.O. Box 3000, FIN-90014 Oulu, Finland
| | - Juha Vaara
- NMR Research Unit, University of Oulu, P.O. Box 3000, FIN-90014 Oulu, Finland
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Filho MAM, Dutra JDL, Cavalcanti HLB, Rocha GB, Simas AM, Freire RO. RM1 Model for the Prediction of Geometries of Complexes of the Trications of Eu, Gd, and Tb. J Chem Theory Comput 2014; 10:3031-7. [DOI: 10.1021/ct400909w] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Manoel A. M. Filho
- Pople
Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, 49.100-000 São Cristóvão, SE, Brazil
| | - José Diogo L. Dutra
- Pople
Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, 49.100-000 São Cristóvão, SE, Brazil
| | - Higo L. B. Cavalcanti
- Departamento
de Química, CCEN, Universidade Federal da Paraíba, 58.059-970 João Pessoa, PB, Brazil
| | - Gerd B. Rocha
- Departamento
de Química, CCEN, Universidade Federal da Paraíba, 58.059-970 João Pessoa, PB, Brazil
| | - Alfredo M. Simas
- Departamento
de Química Fundamental, Universidade Federal de Pernambuco, 50.740-540 Recife, PE, Brazil
| | - Ricardo O. Freire
- Pople
Computational Chemistry Laboratory, Departamento de Química, Universidade Federal de Sergipe, 49.100-000 São Cristóvão, SE, Brazil
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Rezaei B, Askarpour N, Hadadzadeh H. Experimental and PM6/SPARKLE Semiempirical Study of Interaction between 4-Methoxyphenylcyanamide and Gadolinium(III) as a Fast Polymeric Membrane Sensor. ELECTROANAL 2011. [DOI: 10.1002/elan.201000624] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Seitz M, Alzakhem N. Computational Estimation of Lanthanoid−Water Bond Lengths by Semiempirical Methods. J Chem Inf Model 2010; 50:217-20. [DOI: 10.1021/ci9003442] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Michael Seitz
- Department of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstr. 150, D-44801 Bochum, Germany
| | - Nicola Alzakhem
- Department of Chemistry and Biochemistry, Ruhr-University Bochum, Universitätsstr. 150, D-44801 Bochum, Germany
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Puntus LN, Lyssenko KA, Antipin MY, Bünzli JCG. Role of Inner- and Outer-Sphere Bonding in the Sensitization of EuIII-Luminescence Deciphered by Combined Analysis of Experimental Electron Density Distribution Function and Photophysical Data. Inorg Chem 2008; 47:11095-107. [DOI: 10.1021/ic801402u] [Citation(s) in RCA: 142] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Lada N. Puntus
- Laboratory of Molecular Nanoelectronics, Institute of Radio Engineering & Electronics, Russian Academy of Sciences, 11-7 Mokhovaya, Moscow, 125009, Russia, A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, GSP-1, 28 Vavilov Street, Moscow, 119991, Russia, and Laboratory of Lanthanide Supramolecular Chemistry, Swiss Federal Institute of Technology Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Konstantin A. Lyssenko
- Laboratory of Molecular Nanoelectronics, Institute of Radio Engineering & Electronics, Russian Academy of Sciences, 11-7 Mokhovaya, Moscow, 125009, Russia, A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, GSP-1, 28 Vavilov Street, Moscow, 119991, Russia, and Laboratory of Lanthanide Supramolecular Chemistry, Swiss Federal Institute of Technology Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Mikhail Yu. Antipin
- Laboratory of Molecular Nanoelectronics, Institute of Radio Engineering & Electronics, Russian Academy of Sciences, 11-7 Mokhovaya, Moscow, 125009, Russia, A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, GSP-1, 28 Vavilov Street, Moscow, 119991, Russia, and Laboratory of Lanthanide Supramolecular Chemistry, Swiss Federal Institute of Technology Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Jean-Claude G. Bünzli
- Laboratory of Molecular Nanoelectronics, Institute of Radio Engineering & Electronics, Russian Academy of Sciences, 11-7 Mokhovaya, Moscow, 125009, Russia, A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, GSP-1, 28 Vavilov Street, Moscow, 119991, Russia, and Laboratory of Lanthanide Supramolecular Chemistry, Swiss Federal Institute of Technology Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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