Structural and Thermodynamic Analysis of the First Mononuclear Aqueous Aluminum Citrate Complex Using DFT Calculations

Citric Acid-Mediated Abiotic Stress Tolerance in Plants

Several recent studies have shown that citric acid/citrate (CA) can confer abiotic stress tolerance to plants. Exogenous CA application leads to improved growth and yield in crop plants under various abiotic stress conditions. Improved physiological outcomes are associated with higher photosynthetic rates, reduced reactive oxygen species, and better osmoregulation. Application of CA also induces antioxidant defense systems, promotes increased chlorophyll content, and affects secondary metabolism to limit plant growth restrictions under stress. In particular, CA has a major impact on relieving heavy metal stress by promoting precipitation, chelation, and sequestration of metal ions. This review summarizes the mechanisms that mediate CA-regulated changes in plants, primarily CA’s involvement in the control of physiological and molecular processes in plants under abiotic stress conditions. We also review genetic engineering strategies for CA-mediated abiotic stress tolerance. Finally, we propose a model to explain how CA’s position in complex metabolic networks involving the biosynthesis of phytohormones, amino acids, signaling molecules, and other secondary metabolites could explain some of its abiotic stress-ameliorating properties. This review summarizes our current understanding of CA-mediated abiotic stress tolerance and highlights areas where additional research is needed.

Theoretical characterization of Al(III) binding to KSPVPKSPVEEKG: Insights into the propensity of aluminum to interact with key sequences for neurofilament formation

Classical molecular dynamic simulations and density functional theory are used to unveil the interaction of aluminum with various phosphorylated derivatives of the fragment KSPVPKSPVEEKG (NF13), a major multiphosphorylation domain of human neurofilament medium (NFM). Our calculations reveal the rich coordination chemistry of the resultant structures with a clear tendency of aluminum to form multidentate structures, acting as a bridging agent between different sidechains and altering the local secondary structure around the binding site. Our evaluation of binding energies allows us to determine that phosphorylation has an increase in the affinity of these peptides towards aluminum, although the interaction is not as strong as well-known chelators of aluminum in biological systems. Finally, the presence of hydroxides in the first solvation layer has a clear damping effect on the binding affinities. Our results help in elucidating the potential structures than can be formed between this exogenous neurotoxic metal and key sequences for the formation of neurofilament tangles, which are behind of some of the most important degenerative diseases.

Does phosphorylation increase the binding affinity of aluminum? A computational study on the aluminum interaction with serine and O-phosphoserine

Several toxic effects arise from aluminum's presence in living systems, one of these effects is to alter the natural role of enzymes and non-enzyme proteins. Aluminum promotes the hyperphosphorylation of normal proteins. In order to assess the aluminum-binding abilities of phosphorylated proteins and peptides, the interaction of aluminum at different pH with serine and phosphoserine is studied by a Density Functional Theory study, combined with polarizable continuum models to account for bulk solvent effects, and the electronic structure of selected complexes are analyzed by Quantum Theory of "Atoms in Molecules". Our results confirm the high ability of aluminum to bind polypeptides as the pH lowers. Moreover, the phosphorylation of the building blocks increases the affinity for aluminum, in particular at physiological pH. Finally, aluminum shows a tendency to be chelated forming different size rings.

Simultaneous suppression of acid mine drainage formation and arsenic release by Carrier-microencapsulation using aluminum-catecholate complexes

Pyrite (FeS₂), the most common sulfide mineral in nature, plays an important role in the formation of acid mine drainage (AMD), one of the most serious environmental problems after the closure of mines and mineral processing operations. Likewise, arsenopyrite (FeAsS) is an important sulfide mineral because its dissolution releases toxic arsenic (As) into the environment. To mitigate the serious environmental problems caused by pyrite and arsenopyrite, this study investigated carrier-microencapsulation (CME) using Al-catecholate complexes, a technique that selectively forms protective coatings on the surfaces of sulfide minerals, by electrochemical techniques and batch leaching experiments coupled with surface sensitive characterization techniques. Cyclic voltammetry (CV) of Al-catecholate complexes (mono-, bis-, tris-catecholate) suggest that these three species could be oxidatively decomposed in this order: [Al(cat)₃]^3-→[Al(cat)₂]^-→[Al(cat)]⁺→Al³⁺, and these reactions were irreversible. Among these three species, [Al(cat)]⁺ was the most effective in suppressing pyrite and arsenopyrite oxidations because it requires less steps for complete decomposition than the other two complexes. Analyses of CME treated minerals by scanning electron microscopy with energy dispersive X-ray spectroscopy (SEM-EDX) and diffuse reflectance infrared Fourier transform spectroscopy (DRIFTS) indicated that they were covered with Al-oxyhydroxide (γ-AlO(OH)), which became more extensive at higher [Al(cat)]⁺ concentrations. In addition, this coating was stable even at relatively high applied potentials that simulated surface oxidizing conditions. Based on these results, a detailed mechanism of Al-based CME is proposed: (1) adsorption of [Al(cat)]⁺ on the surface of mineral, (2) oxidative decomposition of [Al(cat)]⁺ and release of "free" Al³⁺, and (3) precipitation and formation of Al-oxyhydroxide coating.

Phosphorylation promotes Al(iii) binding to proteins: GEGEGSGG as a case study

Aluminum, the third most abundant element in the Earth's crust and one of the key industrial components of our everyday life, has been associated with several neurodegenerative diseases due to its ability to promote neurofilament tangles and β-amyloid peptide aggregation.

Aluminum interaction with 2,3-diphosphoglyceric acid. A computational study

Favorable formation of aluminum–2,3-DPG complexes in a variety of forms: 1 : 1, 1 : 2 and ternary complexes with citrate.

Pressure induced speciation changes in the aqueous Al³⁺ system

We have developed a simple model for incorporating the influence of external pressure and solution pH into a cluster based (i.e. comprising the central Al(3+) cation and nearest neighbor coordinating H2O and OH(-) ligands) 1st principles approach to investigate the hydrolysis equilibria of aqueous Al(3+) monomeric species in high pressure environments such as are found in the Earth's mantle. Our model is demonstrated to reproduce the well documented bulk chemistry of the aqueous Al(3+) system under ambient conditions, namely the system is dominated at low and high pH by the 6-coordinated aqua species and 4 coordinated hydroxide species, respectively, while all remaining species occupy a narrow intermediate pH range. Coupling this model to changes in solution pH is achieved by using [H3O(+)] as a parameter in the definition of the formation equilibrium constants used; the influence of external pressure is evaluated using Planck's equation. This approach predicts that changes in external pressure will induce drastic changes in the aqueous solubility of these species under high pressure conditions and moderate changes at as low as 5 GPa. Finally, some industrial and geochemical implications of this result are discussed.

Density functional theory studies on the structures and water-exchange reactions of aqueous Al(III)-oxalate complexes

The structures and water-exchange reactions of aqueous aluminum-oxalate complexes are investigated using density functional theory. The present work includes (1) The structures of Al(C(2)O(4))(H(2)O)(4)(+) and Al(C(2)O(4))(2)(H(2)O)(2)(-) were optimized at the level of B3LYP/6-311+G(d,p). The geometries obtained suggest that the Al-OH(2) bond lengths trans to C(2)O(4)(2-) ligand in Al(C(2)O(4))(H(2)O)(4)(+) are much longer than the Al-OH(2) bond lengths cis to C(2)O(4)(2-). For Al(C(2)O(4))(2)(H(2)O)(2)(-), the close energies between cis and trans isomers imply the coexistence in aqueous solution. The (27)Al NMR and (13)C NMR chemical shifts computed with the consideration of sufficient solvent effect using HF GIAO method and 6-311+G(d,p) basis set are in agreement with the experimental values available, indicating the appropriateness of the applied models; (2) The water-exchange reactions of Al(III)-oxalate complexes were simulated at the same computational level. The results show that water exchange proceeds via dissociative pathway and the activation energy barriers are sensitive to the solvent effect. The energy barriers obtained indicate that the coordinated H(2)O cis to C(2)O(4)(2-) in Al(C(2)O(4))(H(2)O)(4)(+) is more labile than trans H(2)O. The water-exchange rate constants (k(ex)) of trans- and cis-Al(C(2)O(4))(2)(H(2)O)(2)(-) were estimated by four methods and their respective characteristics were explored; (3) The significance of the study on the aqueous aluminum-oxalate complexes to environmental chemistry is discussed. The influences of ubiquitous organic ligands in environment on aluminum chemistry behavior can be elucidated by extending this study to a series of Al(III)-organic system.