1
|
Kiani A, Zhou W, Wolf LM. Intermolecular interaction potential maps from energy decomposition for interpreting reactivity and intermolecular interactions. Phys Chem Chem Phys 2024; 27:47-61. [PMID: 39530509 DOI: 10.1039/d4cp03237c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
Abstract
The electrostatic potential (ESP) has been widely used to visualize electrostatic interactions about a molecule. However, electrostatic effects are often insufficient for capturing the entirety of an interaction or a reaction of interest. In this investigation, intermolecular interaction potential maps (IMIPs), constructed from the potentials derived from energy decomposition analysis (EDA) using density functional theory, were developed and applied to provide unique insight into molecular interactions and reactivity. To this end, rather than constructing a potential map from probe point charge interactions, IMIPs were constructed from probe interactions with small molecular fragments, including CH3+, CH3-, benzene, and atomic probes including alkali metals, transition metals, and halides. The interaction potentials are further decomposed producing IMIPs for each interaction component using EDA (electrostatic, orbital, steric, etc.). The IMIPs are applied to the study of various interactions including cation-π and anion-π interactions, electrophilic and nucleophilic aromatic substitution, Lewis acid activation, π-stacking, endohedral fullerenes, and select organometallics which reveal fundamental insight into the positional preferences and physical origins of the interactions that otherwise would be difficult to uncover through other surface analyses.
Collapse
Affiliation(s)
- Amin Kiani
- Department of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854, USA.
| | - Wentong Zhou
- Department of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854, USA.
| | - Lawrence M Wolf
- Department of Chemistry, University of Massachusetts Lowell, Lowell, MA 01854, USA.
| |
Collapse
|
2
|
Xu H, Cheng J, Yang X, Liu Z, Li W, Li Q. Comparison of σ-Hole and π-Hole Tetrel Bonds Formed by Pyrazine and 1,4-Dicyanobenzene: The Interplay between Anion-π and Tetrel Bonds. Chemphyschem 2017; 18:2442-2450. [DOI: 10.1002/cphc.201700660] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Huili Xu
- Laboratory of Theoretical and Computational, Chemistry and School of Chemistry and Chemical Engineering; Yantai University; Yantai 264005 China
| | - Jianbo Cheng
- Laboratory of Theoretical and Computational, Chemistry and School of Chemistry and Chemical Engineering; Yantai University; Yantai 264005 China
| | - Xin Yang
- Laboratory of Theoretical and Computational, Chemistry and School of Chemistry and Chemical Engineering; Yantai University; Yantai 264005 China
| | - Zhenbo Liu
- Laboratory of Theoretical and Computational, Chemistry and School of Chemistry and Chemical Engineering; Yantai University; Yantai 264005 China
| | - Wenzuo Li
- Laboratory of Theoretical and Computational, Chemistry and School of Chemistry and Chemical Engineering; Yantai University; Yantai 264005 China
| | - Qingzhong Li
- Laboratory of Theoretical and Computational, Chemistry and School of Chemistry and Chemical Engineering; Yantai University; Yantai 264005 China
| |
Collapse
|
3
|
Gao M, Gao G, Li Q, Yang X, Li W, Cheng J. Theoretical study of synergistic effects between anion–π and metal–Lp interactions. RSC Adv 2015. [DOI: 10.1039/c5ra12802a] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Interesting cooperativity effects are observed when the anion–π and coinage-metal–Lp interactions coexist in the same multicomponent.
Collapse
Affiliation(s)
- Meng Gao
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005
- People's Republic of China
| | - Guanqing Gao
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005
- People's Republic of China
| | - Qingzhong Li
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005
- People's Republic of China
| | - Xin Yang
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005
- People's Republic of China
| | - Wenzuo Li
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005
- People's Republic of China
| | - Jianbo Cheng
- The Laboratory of Theoretical and Computational Chemistry
- School of Chemistry and Chemical Engineering
- Yantai University
- Yantai 264005
- People's Republic of China
| |
Collapse
|
4
|
Do coinage metal anions interact with substituted benzene derivatives? J Mol Model 2013; 19:4763-72. [DOI: 10.1007/s00894-013-1965-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2013] [Accepted: 07/26/2013] [Indexed: 11/25/2022]
|
5
|
Chifotides HT, Giles ID, Dunbar KR. Supramolecular Architectures with π-Acidic 3,6-Bis(2-pyridyl)-1,2,4,5-tetrazine Cavities: Role of Anion−π Interactions in the Remarkable Stability of Fe(II) Metallacycles in Solution. J Am Chem Soc 2013; 135:3039-55. [DOI: 10.1021/ja3082473] [Citation(s) in RCA: 136] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Helen T. Chifotides
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Ian D. Giles
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| | - Kim R. Dunbar
- Department of Chemistry, Texas A&M University, College Station, Texas 77843, United States
| |
Collapse
|
6
|
Salonen LM, Ellermann M, Diederich F. Aromatische Ringe in chemischer und biologischer Erkennung: Energien und Strukturen. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201007560] [Citation(s) in RCA: 245] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
|
7
|
Salonen LM, Ellermann M, Diederich F. Aromatic rings in chemical and biological recognition: energetics and structures. Angew Chem Int Ed Engl 2011; 50:4808-42. [PMID: 21538733 DOI: 10.1002/anie.201007560] [Citation(s) in RCA: 1183] [Impact Index Per Article: 84.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2010] [Indexed: 12/12/2022]
Abstract
This review describes a multidimensional treatment of molecular recognition phenomena involving aromatic rings in chemical and biological systems. It summarizes new results reported since the appearance of an earlier review in 2003 in host-guest chemistry, biological affinity assays and biostructural analysis, data base mining in the Cambridge Structural Database (CSD) and the Protein Data Bank (PDB), and advanced computational studies. Topics addressed are arene-arene, perfluoroarene-arene, S⋅⋅⋅aromatic, cation-π, and anion-π interactions, as well as hydrogen bonding to π systems. The generated knowledge benefits, in particular, structure-based hit-to-lead development and lead optimization both in the pharmaceutical and in the crop protection industry. It equally facilitates the development of new advanced materials and supramolecular systems, and should inspire further utilization of interactions with aromatic rings to control the stereochemical outcome of synthetic transformations.
Collapse
Affiliation(s)
- Laura M Salonen
- Laboratory of Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, Hönggerberg, HCI, 8093 Zurich, Switzerland
| | | | | |
Collapse
|
8
|
Estarellas C, Bauzá A, Frontera A, Quiñonero D, Deyà PM. On the directionality of anion–π interactions. Phys Chem Chem Phys 2011; 13:5696-702. [DOI: 10.1039/c0cp01894e] [Citation(s) in RCA: 73] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
|
9
|
Lucas X, Estarellas C, Escudero D, Frontera A, Quiñonero D, Deyà PM. Very Long-Range Effects: Cooperativity between Anion-π and Hydrogen-Bonding Interactions. Chemphyschem 2009; 10:2256-64. [DOI: 10.1002/cphc.200900157] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
10
|
Escudero D, Frontera A, Quiñonero D, Deyà PM. Interplay between anion-π and hydrogen bonding interactions. J Comput Chem 2009; 30:75-82. [DOI: 10.1002/jcc.21031] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
|
11
|
Berryman OB, Johnson DW. Experimental evidence for interactions between anions and electron-deficient aromatic rings. Chem Commun (Camb) 2009:3143-53. [DOI: 10.1039/b823236a] [Citation(s) in RCA: 137] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
12
|
|
13
|
Estarellas C, Frontera A, Quiñonero D, Deyà PM. Theoretical and Crystallographic Study of the Dual σ/π Anion Binding Affinity of Quinolizinylium Cation. J Chem Theory Comput 2008; 4:1981-9. [DOI: 10.1021/ct800332y] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Carolina Estarellas
- Departament de Química, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain
| | - Antonio Frontera
- Departament de Química, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain
| | - David Quiñonero
- Departament de Química, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain
| | - Pere M. Deyà
- Departament de Química, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain
| |
Collapse
|
14
|
Kim DY, Singh NJ, Lee JW, Kim KS. Solvent-Driven Structural Changes in Anion−π Complexes. J Chem Theory Comput 2008; 4:1162-9. [DOI: 10.1021/ct8001283] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Dong Young Kim
- Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - N. Jiten Singh
- Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - Jung Woo Lee
- Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| | - Kwang S. Kim
- Center for Superfunctional Materials, Department of Chemistry, Pohang University of Science and Technology, San 31, Hyojadong, Namgu, Pohang 790-784, Korea
| |
Collapse
|
15
|
Quiñonero D, Frontera A, Deyà PM. High-Level Ab Initio Study of Anion–π Interactions in Pyridine and Pyrazine Rings Coordinated to AgI. Chemphyschem 2008; 9:397-9. [DOI: 10.1002/cphc.200700788] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
|
16
|
Estarellas C, Quiñonero D, Frontera A, Ballester P, Morey J, Costa A, Deyà PM. MP2 Study of the Dual σ/π−Anion-Binding Affinity of Fluorinated Phthallic Acid Anhydrides. J Phys Chem A 2008; 112:1622-6. [DOI: 10.1021/jp710572f] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Carolina Estarellas
- Departament de Química, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain, and ICREA and Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43009 Tarragona, Spain
| | - David Quiñonero
- Departament de Química, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain, and ICREA and Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43009 Tarragona, Spain
| | - Antonio Frontera
- Departament de Química, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain, and ICREA and Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43009 Tarragona, Spain
| | - Pablo Ballester
- Departament de Química, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain, and ICREA and Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43009 Tarragona, Spain
| | - Jeroni Morey
- Departament de Química, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain, and ICREA and Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43009 Tarragona, Spain
| | - Antonio Costa
- Departament de Química, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain, and ICREA and Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43009 Tarragona, Spain
| | - Pere M. Deyà
- Departament de Química, Universitat de les Illes Balears, 07122 Palma de Mallorca, Spain, and ICREA and Institute of Chemical Research of Catalonia (ICIQ), Avinguda Països Catalans 16, 43009 Tarragona, Spain
| |
Collapse
|