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Bac S, Quiton SJ, Kron KJ, Chae J, Mitra U, Mallikarjun Sharada S. A matrix completion algorithm for efficient calculation of quantum and variational effects in chemical reactions. J Chem Phys 2022; 156:184119. [PMID: 35568565 DOI: 10.1063/5.0091155] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
This work examines the viability of matrix completion methods as cost-effective alternatives to full nuclear Hessians for calculating quantum and variational effects in chemical reactions. The harmonic variety-based matrix completion (HVMC) algorithm, developed in a previous study [S. J. Quiton et al., J. Chem. Phys. 153, 054122 (2020)], exploits the low-rank character of the polynomial expansion of potential energy to recover vibrational frequencies (square roots of eigenvalues of nuclear Hessians) constituting the reaction path using a small sample of its entities. These frequencies are essential for calculating rate coefficients using variational transition state theory with multidimensional tunneling (VTST-MT). HVMC performance is examined for four SN2 reactions and five hydrogen transfer reactions, with each H-transfer reaction consisting of at least one vibrational mode strongly coupled to the reaction coordinate. HVMC is robust and captures zero-point energies, vibrational free energies, zero-curvature tunneling, and adiabatic ground state and free energy barriers as well as their positions on the reaction coordinate. For medium to large reactions involving H-transfer, with the sole exception of the most complex Ir catalysis system, less than 35% of total eigenvalue information is necessary for accurate recovery of key VTST-MT observables.
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Affiliation(s)
- Selin Bac
- Mork Family Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089, USA
| | - Stephen Jon Quiton
- Mork Family Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089, USA
| | - Kareesa J Kron
- Mork Family Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089, USA
| | - Jeongmin Chae
- Ming Hsieh Department of Electrical and Computer Engineering, University of Southern California, Los Angeles, California 90089, USA
| | - Urbashi Mitra
- Ming Hsieh Department of Electrical and Computer Engineering, University of Southern California, Los Angeles, California 90089, USA
| | - Shaama Mallikarjun Sharada
- Mork Family Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089, USA
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Bhuvaneswari R, Sandhiya L, Senthilkumar K. Theoretical Investigations on the Mechanism and Kinetics of OH Radical Initiated Reactions of Monochloroacetic Acid. J Phys Chem A 2017; 121:6028-6035. [PMID: 28719205 DOI: 10.1021/acs.jpca.7b03760] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The oxidation mechanism of monochloroacetic acid (CH2ClCOOH) by OH radical has been systematically investigated employing quantum mechanical methods coupled with kinetic calculation using canonical variational transition state theory. Three distinct transition states were identified for the titled reaction, two corresponding to the hydrogen atom abstraction and one corresponding to the chlorine atom abstraction. The rate constants of the titled reactions are computed over the temperature range 278-350 K, and the branching ratios calculated for the hydrogen atom abstraction from the -C(O)OH site and the -CH2Cl site are 25 and 75%, respectively, at 298 K. The computed branching ratio indicates that the kinetically favorable reaction is the hydrogen atom abstraction from the -CH2Cl site resulting in the formation of CHClC(O)OH radical, which further undergoes secondary reaction with O2 and other atmospheric species. The calculated overall rate constant for the hydrogen atom abstraction reactions is in consistent with the reported experimental rate constant. The atmospheric lifetime of CH2ClCOOH is found to be around 18 days.
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Affiliation(s)
- R Bhuvaneswari
- Department of Physics, Bharathiar University, Coimbatore - 641 046, Tamil Nadu, India
| | - L Sandhiya
- Department of Physics, Bharathiar University, Coimbatore - 641 046, Tamil Nadu, India
| | - K Senthilkumar
- Department of Physics, Bharathiar University, Coimbatore - 641 046, Tamil Nadu, India
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Priya AM, Lakshmipathi S. DFT study on abstraction reaction mechanism of oh radical with 2-methoxyphenol. J PHYS ORG CHEM 2017. [DOI: 10.1002/poc.3713] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Priya AM, El Dib G, Senthilkumar L, Sleiman C, Tomas A, Canosa A, Chakir A. An experimental and theoretical study of the kinetics of the reaction between 3-hydroxy-3-methyl-2-butanone and OH radicals. RSC Adv 2015. [DOI: 10.1039/c4ra15664a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Absolute experimental and theoretical rate constants are determined for the first time for the reaction of 3-hydroxy-3-methyl-2-butanone with OH as a function of temperature. The atmospheric implications are discussed.
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Affiliation(s)
| | - Gisèle El Dib
- Institut de Physique de Rennes, (IPR)
- UMR 6251 du CNRS - Université de Rennes 1
- 35042 Rennes Cedex
- France
| | | | - Chantal Sleiman
- Institut de Physique de Rennes, (IPR)
- UMR 6251 du CNRS - Université de Rennes 1
- 35042 Rennes Cedex
- France
| | - Alexandre Tomas
- Mines Douai
- Département Sciences de l'Atmosphère et Génie de l'Environnement
- F-59508 Douai
- France
| | - André Canosa
- Institut de Physique de Rennes, (IPR)
- UMR 6251 du CNRS - Université de Rennes 1
- 35042 Rennes Cedex
- France
| | - Abdelkhaleq Chakir
- Université de Reims
- Laboratoire GSMA-UMR 6089 CNRS
- Campus Moulin de la Housse
- 51687 Reims Cedex 02
- France
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Zavala-Oseguera C, Galano A, Merino G. Computational study on the kinetics and mechanism of the carbaryl + OH reaction. J Phys Chem A 2014; 118:7776-81. [PMID: 25142884 DOI: 10.1021/jp507244s] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Carbaryl is released into the atmosphere as a spray drift immediately following the application. In order to evaluate its fate in the atmosphere, a computational study on the kinetics of the OH radical reaction with carbaryl is presented. Different reaction paths are studied at the M05-2X/6-311++G(d,p) level. A complex mechanism involving the formation of a stable reactant complex is proposed and the temperature dependence of the rate coefficients is studied in the 280-650 K temperature range. The principal degradation path is the hydroxyl radical addition to naphthalene, but hydrogen abstractions from the methyl group are identified as a secondary significant path. The rate coefficients, computed using the conventional transition state theory, reproduce quite well the scarce experimental data available.
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Affiliation(s)
- Claudia Zavala-Oseguera
- Departamento de Química, Universidad de Guanajuato , Noria Alta s/n C.P. 36050, Guanajuato, Guanajuato, México
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Priya AM, Senthilkumar L. Degradation of methyl salicylate through Cl initiated atmospheric oxidation – a theoretical study. RSC Adv 2014. [DOI: 10.1039/c4ra02398f] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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Galano A, Alvarez-Idaboy JR. A computational methodology for accurate predictions of rate constants in solution: Application to the assessment of primary antioxidant activity. J Comput Chem 2013; 34:2430-45. [DOI: 10.1002/jcc.23409] [Citation(s) in RCA: 223] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2013] [Revised: 07/11/2013] [Accepted: 07/21/2013] [Indexed: 02/06/2023]
Affiliation(s)
- Annia Galano
- Departamento de Química; Universidad Autónoma Metropolitana-Iztapalapa; San Rafael Atlixco 186, Col. Vicentina. Iztapalapa. C. P.; 09340; México D. F.; México
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Ng M, Mok DKW, Lee EPF, Dyke JM. Rate coefficients of the CF3CHFCF3+ H → CF3CFCF3+ H2reaction at different temperatures calculated by transition state theory withab initioand DFT reaction paths. J Comput Chem 2012; 34:545-57. [DOI: 10.1002/jcc.23163] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2012] [Revised: 08/28/2012] [Accepted: 08/31/2012] [Indexed: 11/07/2022]
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Theoretical studies on the reaction mechanism and kinetics of the atmospheric reactions of 1,4-thioxane with OH radical. Struct Chem 2012. [DOI: 10.1007/s11224-012-9955-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Zavala-Oseguera C, Alvarez-Idaboy JR, Merino G, Galano A. OH Radical Gas Phase Reactions with Aliphatic Ethers: A Variational Transition State Theory Study. J Phys Chem A 2009; 113:13913-20. [DOI: 10.1021/jp906144d] [Citation(s) in RCA: 91] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Claudia Zavala-Oseguera
- Departamento de Química, Universidad de Guanajuato, Noria Alta s/n C.P. 36050, Guanajuato, Gto. México, Facultad de Química, Departamento de Física y Química Teórica, Universidad Nacional Autónoma de México, México DF 04510, and Departamento de Química, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, C. P. 09340, México
| | - Juan R. Alvarez-Idaboy
- Departamento de Química, Universidad de Guanajuato, Noria Alta s/n C.P. 36050, Guanajuato, Gto. México, Facultad de Química, Departamento de Física y Química Teórica, Universidad Nacional Autónoma de México, México DF 04510, and Departamento de Química, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, C. P. 09340, México
| | - Gabriel Merino
- Departamento de Química, Universidad de Guanajuato, Noria Alta s/n C.P. 36050, Guanajuato, Gto. México, Facultad de Química, Departamento de Física y Química Teórica, Universidad Nacional Autónoma de México, México DF 04510, and Departamento de Química, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, C. P. 09340, México
| | - Annia Galano
- Departamento de Química, Universidad de Guanajuato, Noria Alta s/n C.P. 36050, Guanajuato, Gto. México, Facultad de Química, Departamento de Física y Química Teórica, Universidad Nacional Autónoma de México, México DF 04510, and Departamento de Química, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa, C. P. 09340, México
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