Symmetry Conservation in Fukui Functions

A Fukui Analysis of an Arginine-Modified Carbon Surface for the Electrochemical Sensing of Dopamine

Amino acid-modified carbon interfaces have huge applications in developing electrochemical sensing applications. Earlier reports suggested that the amine group of amino acids acted as an oxidation center at the amino acid-modified electrode interface. It was interesting to locate the oxidation centers of amino acids in the presence of guanidine. In the present work, we modeled the arginine-modified carbon interface and utilized frontier molecular orbitals and analytical Fukui functions based on the first principle study computations to analyze arginine-modified CPE (AMCPE) at a molecular level. The frontier molecular orbital and analytical Fukui results suggest that the guanidine (oxidation) and carboxylic acid (reduction) groups of arginine act as additional electron transfer sites on the AMCPE surface. To support the theoretical observations, we prepared the arginine-modified CPE (AMCPE) for the cyclic voltammetric sensing of dopamine (DA). The AMCPE showed excellent performance in detecting DA in blood serum samples.

Regioselectivity of aminomethylation in 3-acetyl-7-hydroxycoumarins: Mannich bases and Betti bases

The atomic electron density distribution in 3-acetyl-7-hydroxycoumarin was analysed to elucidate the regioselectivity of aminomethylation.

Orbital-Weighted Dual Descriptor for the Study of Local Reactivity of Systems with (Quasi-) Degenerate States

An alternative response function, based on the dual descriptor in terms of Koopmans' approximation, is hereby proposed for the description of chemical reactivity in systems with (quasi-) degenerate frontier molecular orbitals. This descriptor is constructed from Fukui functions that include contributions from different orbitals, i.e., orbital-weighted Fukui functions. The methodology is applied to three case studies: the first case consists of a series of benchmark organic and inorganic molecules from which the dual descriptor, based only on frontier orbitals, is not appropriate to describe their reactivity. The second case deals with the proper description of chemical reactivity in Diels-Alder reactions between fullerene C₆₀ and cyclopentadiene (CP), revealing the importance of considering secondary orbital interactions for an adequate regioselectivity description. The third, and last case, consists of a series of polycyclic aromatic hydrocarbons (PAHs) possessing molecular orbital degeneracy. By means of analyzing of this descriptor, an alternative approach to the description of aromaticity is proposed. In all cases, the proposed index called "orbital-weighted dual descriptor" has proven to accurately describe the chemical reactivity and aromaticity of the studied systems.

Cyclic Voltammetric and Quantum Chemical Studies of a Poly(methionine) Modified Carbon Paste Electrode for Simultaneous Detection of Dopamine and Uric Acid

Fabrication of biocompatible electrodes for the investigation of catecholamines is a known challenge. In this work, methionine was chosen as a modifier for fabrication of a biocompatible carbon paste electrode by electropolymerization, through cyclic voltammetry. The electrochemical behavior of the poly(methionine) modified carbon paste electrode was characterized by cyclic voltammetry for simultaneous determination of dopamine (DA) and uric acid (UA) in a phosphate-buffered solution at pH 7.0. In the absence of an amino acid methionine layer, the bare carbon paste electrode exhibits rather poor voltammetric signals in DA and UA in the binary mixture, with oxidation potentials of DA and UA overlapping with each other. The poly(methionine) modified carbon paste electrode exhibits good catalytic activity with noticeably different oxidation potentials of DA and UA. The experimental results closely agree with the theoretical prediction based on a Fukui function complementary to the simulated electrostatic potential maps.

Quantum chemical and electrochemical studies of lysine modified carbon paste electrode surfaces for sensing dopamine

We have improved the sensitivity of a carbon paste electrode from lysine for the sensitive detection of dopamine.

Regioselectivity in hexagonal boron nitride co-doped graphene

The active electron transfer (ET) sites on the graphene surface can be controlled by hexagonal boron nitride (h-BN) doping.

Towards the rationalization of catalytic activity values by means of local hyper-softness on the catalytic site: a criticism about the use of net electric charges

By means of the Spin-Polarized Conceptual Density Functional Theory (SP-CDFT), three 2,6-bis(imino)pyridine catalysts based on iron(II), used for polymerization of ethylene, were studied. The catalysts differed by the substituent group, bearing either -H, -NO2 or -OCH3. To date, catalytic activity, a purely experimental parameter measuring the mass of polyethylene produced per millimole of iron per time and pressure unit at a fixed temperature, has not been explained in terms of local hyper-softness. The latter is a purely theoretical parameter designed for quantifying electronic effects; it is measured using the metal atom responsible for the coordination process with the monomer (ethylene). Because steric effects are not relevant in these kinds of catalysts and only electronic effects drive the catalytic process, an interesting link is found between catalytic activity and the local hyper-softness condensed on the iron atom by means of four functionals (B3LYP, BP86, B97D, and VSXC). This work demonstrates that the use of local hyper-softness, predicted by the SP-CDFT, is a suitable parameter for explaining order relationships among catalytic activity values, thus quantifying the electronic influence of the substituent group inducing this difference; the use of only net electric charges does not lead to clear conclusions. This finding can aid in estimating catalytic activities leading to a more rational design of new catalysts via computational chemistry.

Robust and Efficient Auxiliary Density Perturbation Theory Calculations

A new iterative solver for the recently developed time-dependent auxiliary density perturbation theory is presented. It is based on the Eirola-Nevanlinna algorithm for large nonsymmetric linear equation systems. The new methodology is validated by static and dynamic polarizability calculations of small molecules. Comparison between the analytic and iterative solutions of the response equation system shows excellent agreement for the calculated static and dynamic polarizabilities. The new iterative solver reduces the formal scaling from [Symbol: see text](N(4)) to [Symbol: see text](N(3)). Furthermore, the observed computational scaling for linear alkane chains is N(1.6). This subquadratic behavior is possible in systems with a few hundred atoms because of the very small prefactors of the [Symbol: see text](N(3)) and [Symbol: see text](N(2)) steps remaining in the iterative solver. To demonstrate the potential of this new methodology, static polarizabilities of giant fullerenes up to C960, with more than 14,000 basis functions, are calculated.

QSAR study of the DPPH· radical scavenging activity of coumarin derivatives and xanthine oxidase inhibition by molecular docking

A Quantitative Structure-Activity Relationship (QSAR) of coumarins by genetic algorithms employing physicochemical, topological, lipophilic and electronic descriptors was performed. We have used experimental antioxidant activities of specific coumarin derivatives against the DPPH· radical molecule. Molecular descriptors such as Randic Path/Walk, hydrophilic factor and chemical hardness were selected to propose a mathematical model. We obtained a linear correlation with R2 = 96.65 and Q LOO2 = 93.14 values. The evaluation of the predictive ability of the model was performed by applying the Q ASYM2, $\hat r^2 $ and Δr m2 methods. Fukui functions were calculated here for coumarin derivatives in order to delve into the mechanics by which they work as primary antioxidants. We also investigated xanthine oxidase inhibition with these coumarins by molecular docking. Our results show that hydrophobic, electrostatic and hydrogen bond interactions are crucial in the inhibition of xanthine oxidase by coumarins.

Computational chemistry of natural products: a comparison of the chemical reactivity of isonaringin calculated with the M06 family of density functionals

The M06 family of density functionals has been assessed for the calculation of the molecular structure and properties of the Isonaringin flavonoid that can be an interesting material for dye-sensitized solar cells (DSSC). The chemical reactivity descriptors have been calculated through chemical reactivity theory within DFT (CR-DFT). The active sites for nucleophilic and electrophilic attacks have been chosen by relating them to the Fukui function indices and the dual descriptor f ((2))(r). A comparison between the descriptors calculated through vertical energy values and those arising from the Janak's theorem approximation have been performed in order to check for the validity of the last procedure.

Photoabsorption spectra from time-dependent auxiliary density functional theory

Time-dependent auxiliary density perturbation theory (TDADPT) is extended to the calculation of excited states. The resulting time-dependent auxiliary density functional theory (TDADFT) is structurally identical to the original formulation of Casida. However, significant simplifications occur for the Coulomb and exchange–correlation response due to the underlying auxiliary density functional theory. Here, we present the working equations for TDADFT and a new implementation. Because this new parallel TDADFT implementation is particularly well suited for the calculation of large numbers of excitations, we validate it by the calculation of photoabsorption spectra. Direct comparison with experiment underlines the accuracy and reliability of TDADFT. For selected peaks of the studied polycyclic aromatic hydrocarbon spectra, the assignments of the underlying excitations are also presented.

Computational nanochemistry report on the oxicams--conceptual DFT indices and chemical reactivity

A density functional theory study of eight oxicams was carried out in order to determine their global and local reactivities. These types of reactivities were measured by means of global and local reactivity descriptors coming from the conceptual density functional theory. Net electrophilicity as a global reactivity descriptor and local hypersoftness as a local reactivity descriptor were the used tools to distinguish reactivity and selectivity among these oxicams. Globally, isoxicam presents the highest electron donating capacity; meanwhile, the highest electron accepting capacity is exhibited by droxicam. Locally, two oxicams present neither nucleophilic nor electrophilic relevant reactivity in their peripheral pyridine ring, droxicam and tenoxicam, so that their more reactive zones are found on the respective fused rings. Oxicams have been divided into two subgroups in order to facilitate the local analysis of reactivity. One group is characterized because their most important condensed values for local hypersoftnes are well-separated: 4-meloxicam, lornoxicam, meloxicam, and normeloxicam. Meanwhile, the opposite situation is found in droxicam, isoxicam, piroxicam, and tenoxicam. As a whole, the nucleophilic characteristic noticeably predominates in these eight oxicams instead of an electrophilic behavior, thus meaning a greater tendency to donate electrons rather than withdrawing them; a consequence of this behavior implies a favorable interaction with a hypothetical receptor bearing one or more electron acceptor functional groups rather than electron donor functional groups; this would imply a maximization of this interaction from the covalent point of view.

Correlation between charge-transfer and rotation of C60 on WO2/W(110)

Understanding molecular switching between different charge states is crucial to further progress in molecule-based nano-electronic devices. Herein we have employed scanning tunnelling microscopy to visualize different charge states of a single C60 molecule within a molecular layer grown on the WO2/W(110) surface. The results obtained demonstrate that individual C60 molecules within the layer switch between neutral and negatively charged states in the temperature range of 220-260 K over the time scale of the experiment. The charging of the C60 causes changes in the local density of electron states and consequently a variation in tunnelling current. Using density functional theory calculations, it was found that the charged state corresponds to the negatively charged C60(-), which has accepted an electron. The switching of the molecule into the charged state is triggered continuously by tunnelling electrons when the STM tip is static above an individual C60 molecule with a bias applied. Molecular movement accompanies the molecule's switching between these states.

Computational Nutraceutics: Chemical Reactivity Properties of the Flavonoid Naringin by Means of Conceptual DFT

The M06 family of density functionals has been assessed for the calculation of the molecular structure and properties of the Naringin molecule. The chemical reactivity descriptors have been calculated through Conceptual DFT. The active sites for nucleophilic and electrophilic attacks have been chosen by relating them to the Fukui function indices and the dual descriptorf(2)(r). A comparison between the descriptors calculated through vertical energy values and those arising from the Koopmans' theorem approximation has been performed in order to check for the validity of the last procedure.

An intermediate level of approximation for computing the dual descriptor

At present, there are two levels of approximation to compute the dual descriptor (DD). The first uses the total electronic density of the original system along with the electronic densities of the system with one more electron and one less electron, but this procedure is time consuming and normal termination of computation of total electronic densities is not guaranteed. The second level of approximation uses only the electronic densities of frontier molecular orbitals, HOMO and LUMO, to avoid the former approximation; however, the orbital relaxation implicitly included in the first level of approximation is absent in the second, thus risking an incorrect interpretation of local reactivity. Between the lowest occupied molecular orbital (LOMO) and the highest unoccupied molecular orbital (HUMO), a framework to provide an expression of the DD in terms of the electronic densities of all molecular orbitals (except HUMO and LOMO) has been proposed to be implemented by programmers as a computational code. This methodology implies another level of approximation located between the conventional approximation methods mentioned above. In this study, working equations have been oriented toward molecular closed- and open-shell systems. In addition, the mathematical expression for a closed-shell system was applied to acetylene in order to assess the capability of this approach to generate the DD.

Explaining reaction mechanisms using the dual descriptor: a complementary tool to the molecular electrostatic potential

The intrinsic reactivity of cyanide when interacting with a silver cation was rationalized using the dual descriptor (DD) as a complement to the molecular electrostatic potential (MEP) in order to predict interactions at the local level. It was found that DD accurately explains covalent interactions that cannot be explained by MEP, which focuses on essentially ionic interactions. This allowed the rationalization of the reaction mechanism that yields silver cyanide in the gas phase. Other similar reaction mechanisms involving a silver cation interacting with water, ammonia, and thiosulfate were also explained by the combination of MEP and DD. This analysis provides another example of the usefulness of DD as a tool for gaining a deeper understanding of any reaction mechanism that is mainly governed by covalent interactions.

Revisiting caffeate's capabilities as a complexation agent to silver cation in mining processes by means of the dual descriptor--a conceptual DFT approach

Caffeic acid (C(9)H(8)O(4)) and its conjugate base C(9)H(7)O(4) (-) (anionic form-known as caffeate) were analyzed computationally through the use of quantum chemistry to assess their intrinsic global and local reactivity using the tools of conceptual density functional theory. The anionic form was found to be better at coordinating the silver cation than caffeic acid thus suggesting the use of caffeate as a complexation agent. The complexation capability of caffeate was compared with that of some of the most common ligand agents used to coordinate silver cations. Local reactivity descriptors allowed identification of the preferred sites on caffeate for silver cation coordination thus generating a plausible silver complex. All silver complexes were analyzed thermodynamically considering interaction energies in both gas and aqueous phases; the complexation free energy in aqueous phase was also determined. These results suggest that more attention be paid to the caffeate anion and its derivatives because this work has shed new light on the behavior of this anion in the recovery of silver cations that could be exploited in silver mining processes in a environmentally friendly way.