Tautomerism in Reduced Pyrazinacenes

Protic Processes in an Extended Pyrazinacene: The Case of Dihydrotetradecaazaheptacene

Pyrazinacenes are linearly fused heteroaromatic rings, with N atoms replacing all apical CH moieties. Component rings may exist in a reduced state, having NH groups instead of N, causing cross-conjugation. These compounds have interesting optical and electronic properties, including strong fluorescence in the near-infrared region and photocatalytic properties, leading to diverse possible applications in bio-imaging and organic synthesis, as well as obvious molecular electronic uses. In this study, we investigated the behavior of seven-ring pyrazinacene 2,3,11,12-tetraphenyl-7,16-dihydro-1,4,5,6,7,8,9,12,13,14,15,16,17,18-tetradecaazaheptacene (Ph4H2N14HEPT), with an emphasis on protic processes, including oxidation, tautomerism, deprotonation, and protonation, and the species resulting from those processes. We used computational methods to optimize the structures of the different species and generate/compare molecular orbital structures. The aromaticity of the species generated by the different processes was assessed using the nucleus-independent chemical shifts, and trends in the values were associated with the different transformations of the pyrazinacene core. The computational data were compared with experimental data obtained from synthetic samples of the molecule tBu8Ph4H2N14HEPT.

The Pyrazinacenes

Pyrazinacenes are a class of nitrogen-containing heteroacene molecules composed of linearly fused pyrazine units, which might also include dihydropyrazine groups leading to different reduced states of the compounds. While they are structurally similar to hydrocarbon acenes (e.g., pentacene) the presence of increasing numbers of N-heteroatoms introduces several different additional features of the compounds so that they can be considered for investigations beyond those suggested for acenes (i.e., organic field-effect transistors, solar cell components). Pyrazinacenes are in several ways complementary to C-H-only acenes based on the increasing stability of reduced states of the compounds with increasing numbers of fused pyrazine rings, although an acene-like electronic structure persists in the compounds so far studied. However, the introduction of multiple N atoms leads to properties that depart from C-H-only acenes. In particular, the compounds exhibit a delocalization of NH protons in extended reduced compounds and oxidation state switchability in solution and at interfaces. The presence of NH groups also allows an easy introduction of solubilizing groups at the pyrazinacene chromophore. In this Account, we will describe the preparation of extended pyrazinacenes from dipyrazino[2,3-b:2',3'-e]pyrazine (1,4,5,8,9,10-hexaazaanthracene; N6) derivatives up to 1,4,5,6,7,8,9,12,13,14,15,16,17,18-tetradecaazaheptacene (N14) and also assess structures of the relevant compounds based on X-ray crystallographic studies. Emergent properties of the molecules include highly unusual linear tautomeric processes based on a delocalization of protons (and the corresponding formation of orbitals based on multiple adjacent N lone electron pair interactions), which suggest special transport properties based on molecular protonics. Molecules such as decazapentacene (N10) exhibit multistability of oxidation state, and this is predicted to promote the redox catalytic properties of the compounds. The oxidation-state switching of on-surface processes is also described and has been investigated using scanning tunneling microscopy. The longest known pyrazinacene chromophore (N14) exhibits amphiprotism with its state of protonation being strongly coupled to its fluorescence emission properties in the near-infrared region indicating possible uses in pH-coupled bioimaging applications. The synthesis of the pyrazinacenes is flexible and allows the preparation of symmetrically or unsymmetrically substituted derivatives for the development of more complex molecules and for control of the electronic structure of the acene unit. Overall, the pyrazinacenes represent an emerging class of highly nitrogenous heteroacenes with unique properties and excellent potential for development in different applications based on their special supramolecular properties including guest binding or interactions in biological systems.

Metadynamics for training neural network model chemistries: A competitive assessment

Neural network model chemistries (NNMCs) promise to facilitate the accurate exploration of chemical space and simulation of large reactive systems. One important path to improving these models is to add layers of physical detail, especially long-range forces. At short range, however, these models are data driven and data limited. Little is systematically known about how data should be sampled, and "test data" chosen randomly from some sampling techniques can provide poor information about generality. If the sampling method is narrow, "test error" can appear encouragingly tiny while the model fails catastrophically elsewhere. In this manuscript, we competitively evaluate two common sampling methods: molecular dynamics (MD), normal-mode sampling, and one uncommon alternative, Metadynamics (MetaMD), for preparing training geometries. We show that MD is an inefficient sampling method in the sense that additional samples do not improve generality. We also show that MetaMD is easily implemented in any NNMC software package with cost that scales linearly with the number of atoms in a sample molecule. MetaMD is a black-box way to ensure samples always reach out to new regions of chemical space, while remaining relevant to chemistry near k_bT. It is a cheap tool to address the issue of generalization.