Improvement of (31)P NMR spectral resolution by 8-hydroxyquinoline precipitation of paramagnetic Fe and Mn in environmental samples

The highly effective cadmium-resistant mechanism of Pseudomonas aeruginosa and the function of pyoverdine induced by cadmium

Pyoverdine (PVD) plays an important role in reducing cadmium (Cd) accumulation in plants. Some Pseudomonas aeruginosa (P. aeruginosa) species can produce PVD under Cd(Π) stress. However, the function of Cd(Π)-induced PVD remains unclear. In this study, we isolated a highly effective Cd(Π)-resistant P. aeruginosa which can secrete PVD under Cd(Π) stress and found that PVD secretion has a dose-dependent relationship with Cd(Π) concentration. PVD can form a PVD-Cd complex with Cd(Π), though the PVD-Cd complex is unable to be adsorbed by the cell or enter the cell, so the complexation of PVD and Cd(Π) impedes Cd(Π) adsorption on the cell surface and alleviates the oxidative stress, lipid peroxidation, and morphological destruction of the cell caused by Cd(Π) and effectively improves the resistance of P. aeruginosa to Cd(Π). In summary, our research results indicate that the Cd(Π) resistance mechanism of P. aeruginosa screened is the complexation of PVD for Cd(Π) and the adsorption of bacteria for Cd(Π); furthermore, PVD plays an important role in improving the Cd(Π)-resistant ability of bacteria. This study provides a deeper understanding of the highly effective Cd(Π) resistance mechanism of P. aeruginosa and the function of Cd(Π)-induced PVD in bacteria.

Soil phosphorus availability and fractionation in response to different phosphorus sources in alkaline and acid soils: a short-term incubation study

Using agricultural wastes as an alternative phosphorus (P) source has great prospects to improve soil P status. A 70-day incubation experiment was carried out to investigate the effects of superphosphate (SSP), poultry manure (PM), cattle manure (CM), maize straw (MS), and cattle bone meal (CB) with the same total P input on soil P availability and fractions in typical acidic (red soil) and alkaline (fluvo-aquic soil) soils. The results showed that in both fluvo-aquic and red soils, CM out-performed other P sources in improving soil P availability. Changes in soil Olsen-P (ΔOlsen-P) were greater in fluvo-aquic soils with SSP, PM and CM additions than in red soils. Among the different P sources used, only CM has increased the labile soil P fractions to levels similar to that with SSP. Compared with SSP, more monoester P and inositol hexakisphosphate were detected in soils amended with PM and CM. A structural equation model (SEM) analysis suggested that soil pH had a direct positive effect on the labile P fractions in the acidic red soil amended with different P sources. In summary, CM is a superior P source for increasing plant available soil P, with considerable practical implications for P recycling.

A new solution 31P NMR sample extraction scheme for freshwater ecosystem sediments

A new approach for the extraction of organic phosphorus (Po) from freshwater sediments, which can be used in solution ³¹P nuclear magnetic resonance spectroscopy (³¹P NMR), has been developed and optimized. This approach addresses three important factors for sediment extraction: pH, organic matter (OM), and paramagnetic ions. We classified the sediments according to the pH, OM, and paramagnetic ions (acidic: pH < 7, alkaline: pH > 7; low OM: OM < 100 g·kg^-1, high OM: OM > 100 g·kg^-1; non-calcareous: Ca/(Fe + Al) < 0.5, calcareous: Ca/(Fe + Al) > 0.5). The 0.25 and 0.5 mol·L^-1 NaOH were optimum concentration for acidic and alkaline sediment extracted, respectively. The ratio of sediment to extraction remains at 1:10 (w:v) which exhibited higher extraction efficiency compared with 1:5 and 1:20 for both low and high OM sediments. Use of 25 mmol·L^-1 and 50 mmol·L^-1 ethylenediaminetetraacetic acid (EDTA) was optimal for Po extraction from non-calcareous and calcareous sediments, respectively. A useful extraction ratio table was developed through systematic orthogonal experiment. This new approach will allow ³¹P NMR to be more efficiently used for freshwater Po analysis and will help answer questions regarding to the fate and function of Po in freshwater sediments.

Removal of Paramagnetic Ions Prior to Analysis of Organic Reactions in Aqueous Solutions by NMR Spectroscopy

This article describes a method for improving ¹H NMR spectra of aqueous samples containing paramagnetic metals by precipitation of metal cations with a variety of counteranions. The addition of hydroxide, phosphate, carbonate, and arsenate to solutions of transition metals such as Fe²⁺ and Mn²⁺ can reduce line broadening and improve the ability of a spectrometer to lock on the signal of deuterium. The method is most effective under strongly alkaline conditions, and care must be taken to observe whether the organic substrates undergo side reactions or are themselves removed from solution upon addition of the precipitating salts. As a demonstration of the practical value of the method, we show that NMR spectroscopy can be used to monitor the transition-metal-mediated hydrolysis of glycylglycine (Gly₂).

New insights into toxic effects of arsenate on four Microcystis species under different phosphorus regimes

Very little information is available on the stressed growth of Microcystis imposed by arsenate (As(V)) under different phosphorus (P) regimes. In this study, we examined the growth characteristics and arsenic transformation of four Microcystis species exposed under As(V) with two P sources involving dissolved inorganic phosphorus (IP) and organophosphate (D-glucose-6-phosphate disodium salt, GP). Results showed that all the four chosen Microcystis species could grow and reproduce with GP as the only P source, and the difference was insignificant when compared with IP. From optical density (OD), chlorophyll a (Chla), and actual quantum yield (Yield), the tolerance to As(V) of the chosen species was following as FACHB 905 > FACHB 1028 > FACHB 1334 > FACHB 912. Specifically, the 96 h EC₅₀ of As(V) for FACHB 905 in IP was approx. 4 orders of magnitude higher than that in GP, but for other three algal species, the 96 h EC₅₀ values were similar under the two given different P conditions. Furthermore, all antioxidant enzyme activities of superoxide dismutase (SOD), peroxide dismutase (POD), glutathione S-transferases (GSTs), and metalloproteinase (MTs) in algal cells were significantly increased in GP conditions. Moreover, the enzyme activities of AKP, GSTs, and MTs were inhibited with increasing As(V) levels under both IP and GP conditions. In addition, arsenite (As(III)) and methylated As of monomethylarsonic acid (MMA) and dimethylthioarsinic acid (DMA) were found in FACHB 912 and FACHB 1334 media, indicating that these Microcystis could detoxify As(V) by As biotransformation under IP and GP conditions. Specifically, As(V) reduction was elevated in media of FACHB 1334 and FACHB 905, but was decreased in media of FACHB 912 under GP conditions. Our results highlight the different P sources that impact the toxic effects of arsenate exposure on Microcystis and subsequent As biotransformation.

Recent developments in siderotyping: procedure and application

Siderophores are metal chelating secondary metabolites secreted by almost all organisms. Beside iron starvation, the ability to produce siderophores depends upon several other factors. Chemical structure of siderophore is very complex with vast structural diversity, thus the principle challenge involves its detection, quantification, purification and characterisation. Metal chelation is its most fascinating attribute. This metal chelation property is now forming the basis of its application as molecular markers, siderotyping tool for taxonomic clarification, biosensors and bioremediation agents. This has led researchers to develop and continuously modify previous techniques in order to provide accurate and reproducible methods of studying siderophores. Knowledge obtained via computational approaches provides a new horizon in the field of siderophore biosynthetic gene clusters and their interaction with various proteins/peptides. This review illustrates various techniques, bioinformatics tools and databases employed in siderophores' studies, the principle of analytical methods and their recent applications.

Improvement of quantitative solution 31P NMR analysis of soil organic P: a study of spin-lattice relaxation responding to paramagnetic ions

Solution ³¹P nuclear magnetic resonance (NMR) spectroscopy has been widely applied to analyze the speciation of soil organic P; however, this time-consuming technique suffers from a low analytical efficiency, because of the lack of fundamental information such as the spin-lattice relaxation (T₁) of ³¹P nucleus for model P compounds. In this study, we for the first time determined the T₁ values of twelve typical soil organic P compounds using the inversion recovery method. Furthermore, we examined the effect of co-existing paramagnetic ions (e.g., Fe³⁺ and Mn²⁺) on the reduction of the T₁ values of these compounds. Without the addition of paramagnetic ions, the T₁ values of twelve model P compounds ranged from 0.61 s for phytic acid to 9.65 s for orthophosphate. In contrast, the presence of paramagnetic ion significantly shortened the T₁ values of orthophosphate, pyrophosphate, and phytic acid to 1.29, 1.26, and 0.07 s, respectively, except that of deoxyribonucleic acid (DNA) remaining unchanged. Additionally, we evaluated the feasibility of improving the efficiency of quantitative ³¹P NMR analysis via addition of paramagnetic ion. Results show that, after an addition of 50 mg L^-1 paramagnetic ions, ³¹P NMR measurement can be 3 times more efficient, attributed to the reduced T₁ and the corresponding recycle delay.

Fe(III)-based immobilized metal-affinity chromatography (IMAC) method for the separation of the catechol siderophore from Bacillus tequilensis CD36

Catechol siderophore plays an important role in microbial ecology, agriculture, and medicine, but its research is often limited by the difficulty in acquisition of it in large quantities. Based on evidence from the coordination chemistry and chemical biology, catechol siderophore could chelate Fe³⁺ with high affinity. Therefore, Fe(III)-based immobilized metal-affinity chromatography (IMAC) was applied to capture siderophore from the culture filtrate of Bacillus tequilensis CD36. The ethanol-precipitated sample and the separated sample from Fe(III)-based IMAC were analyzed by liquid chromatography-mass spectrometry. According to the result, the pure siderophore DHB-Gly-Thr could be extracted from the ethanol-precipitated sample. Compared with other purifications, Fe(III)-based IMAC was convenient and had fewer steps. In addition, it also reduced the use of toxic chemical solvents in some traditional extraction process, such as extraction and ion exchange chromatography. Fe(III)-based IMAC was successfully used in separation of the catechol siderophore from B. tequilensis CD36. The results revealed that Fe(III)-based IMAC was an efficient and environmentally friendly method for the separation and purification of catechol siderophore.

Characteristics of bioavailable organic phosphorus in sediment and its contribution to lake eutrophication in China

This study aims to establish the relative importance of sediment organic phosphorus (P_o) to the total P and the major classes of organic molecules that contribute to sediment P_o, determined by measuring their susceptibility to enzymatic hydrolysis, across a suite of lakes ranging from oligotrophic to eutrophic status. The results showed that P_o accounted for 21-60% of total P, and bioavailable P_o accounted for 9-34% of P_o in the sediments. The bioavailable P_o includes mainly labile (H₂O-P_o) and moderately labile (NaOH-P_o) P forms. For H₂O-P_o (accounting for only1.4% of P_o), 53% (average) was labile monoester P, 28% was diester P and 17% was phytate-like P. For NaOH-P_o (accounting for 9-33% of P_o), 32% was labile monoester P, 33% was phytate-like P and 18% was diester P. The composition of bioavailable P_o, determined by enzyme assays, was related to the lake nutrient levels, which implies that sediment bioavailable P_o could act as an effective indicator for lake eutrophic status. With the increase of lake nutrient levels, bioavailable P_o content and alkaline phosphatase activity in the sediment all increased, indicating that P_o represents an important and bioavailable source of P that increases with eutrophication, and could contribute to internal loading and resistance of eutrophic lakes to remediation. This implies that eutrophic lakes would maintain long-term eutrophic status and algal bloom phenomena even after the external input of P was controlled and the total P concentration of water has declined. Thus, in order to reduce the release risk of sediment P more efficiently and effectively, sediment P control technique should focus not only on reducing the total P and inorganic P, but should also pay close attention to the removal of bioavailable P_o.

Risk of phosphorus leaching from phosphorus-enriched soils in the Dianchi catchment, Southwestern China

As an important pathway for phosphorus (P) transport from soil to water body, P leaching has aroused attention. This study aimed to investigate the degree of risk and forms of P leaching from P-enriched soils. Surface soils were collected from forest land (FL) and open agricultural land (OAL) in typical P-enriched area of the Dianchi catchment, China. Based on analysis of soil P and water-soluble P using chemical methods and (31)P-NMR analysis, combined with a soil column leaching experiment, P forms and risk of P leaching were identified. CaCl2-extractable water-soluble organic P (CaCl2-Po), inorganic P (CaCl2-Pi), and total P (CaCl2-P) extracted using 0.01-M CaCl2 solution were found to be useful for predicting potential organic and inorganic P leaching, given a linear, positive correlation between CaCl2-P, CaCl2-Pi, and CaCl2-Po in soils and accumulated amounts of corresponding P forms in soil leachates. The majority of investigated FL was at or above the change points of 46, 46, and 42 mg AP kg(-1) for CaCl2-Pi, CaCl2-Po, and CaCl2-P, respectively, and thus at a risk of P leaching. Organic and inorganic P leaching was present in nearly all investigated OAL. CaCl2-Po accounted for 66.0 % of CaCl2-P in FL and 56.1 % in OAL. Signals of (31)P-NMR spectra were mainly attributable to orthophosphate, orthophosphate monoesters, and orthophosphate diesters in FL and OAL soils. It is important to consider P loss due to leaching of inorganic and organic P in P-enriched areas.

Innovative methods in soil phosphorus research: A review

Phosphorus (P) is an indispensable element for all life on Earth and, during the past decade, concerns about the future of its global supply have stimulated much research on soil P and method development. This review provides an overview of advanced state-of-the-art methods currently used in soil P research. These involve bulk and spatially resolved spectroscopic and spectrometric P speciation methods (1 and 2D NMR, IR, Raman, Q-TOF MS/MS, high resolution-MS, NanoSIMS, XRF, XPS, (µ)XAS) as well as methods for assessing soil P reactions (sorption isotherms, quantum-chemical modeling, microbial biomass P, enzymes activity, DGT, ³³P isotopic exchange, ¹⁸O isotope ratios). Required experimental set-ups and the potentials and limitations of individual methods present a guide for the selection of most suitable methods or combinations.

Phosphorus speciation in a eutrophic lake by ³¹P NMR spectroscopy

For eutrophic lakes, patterns of phosphorus (P) measured by standard methods are well documented but provide little information about the components comprising standard operational definitions. Dissolved P (DP) and particulate P (PP) represents important but rarely characterized nutrient pools. Samples from Lake Mendota, Wisconsin, USA were characterized using 31-phosphorus nuclear magnetic resonance spectroscopy ((31)P NMR) during the open water season of 2011 in this unmatched temporal study of aquatic P dynamics. A suite of organic and inorganic P forms was detected in both dissolved and particulate fractions: orthophosphate, orthophosphate monoesters, orthophosphate diesters, pyrophosphate, polyphosphate, and phosphonates. Through time, phytoplankton biomass, temperature, dissolved oxygen, and water clarity were correlated with changes in the relative proportion of P fractions. Particulate P can be used as a proxy for phytoplankton-bound P, and in this study, a high proportion of polyphosphate within particulate samples suggested P should not be a limiting factor for the dominant primary producers, cyanobacteria. Hypolimnetic particulate P samples were more variable in composition than surface samples, potentially due to varying production and transport of sinking particles. Surface dissolved samples contained less P than particulate samples, and were typically dominated by orthophosphate, but also contained monoester, diester, polyphosphate, pyrophosphate, and phosphonate. Hydrologic inflows to the lake contained more orthophosphate and orthophosphate monoesters than in-lake samples, indicating transformation of P from inflowing waters. This time series explores trends of a highly regulated nutrient in the context of other water quality metrics (chlorophyll, mixing regime, and clarity), and gives insight on the variability of the structure and occurrence of P-containing compounds in light of the phosphorus-limited paradigm.

Speciation of organic phosphorus in a sediment profile of Lake Taihu. II. Molecular species and their depth attenuation

The understanding of organic phosphorus (P) dynamics in sediments requires information on their species at the molecular level, but such information in sediment profiles is scarce. A sediment profile was selected from a large eutrophic lake, Lake Taihu (China), and organic P species in the sediments were detected using solution phosphorus-31 nuclear magnetic resonance spectroscopy (31P NMR) following extraction of the sediments with a mixture of 0.25 mol/L NaOH and 50 mmol/L EDTA (NaOH-EDTA) solution. The results showed that P in the NaOH-EDTA extracts was mainly composed of orthophosphate, orthophosphate monoesters, phospholipids, DNA, and pyrophosphate. Concentrations of the major organic P compound groups and pyrophosphate showed a decreasing trend with the increase of depth. Their half-life times varied from 3 to 27 years, following the order of orthophosphate monoesters > phospholipids > or = DNA > pyrophosphate. Principal component analysis revealed that the detected organic P species had binding phases similar to those of humic acid-associated organic P (NaOH-NRP(HA)), a labile organic P pool that tends to transform to recalcitrant organic P pools as the early diagenetic processes proceed. This demonstrated that the depth attenuation of the organic P species could be partly attributed to their increasing immobilization by the sediment solids, while their degradation rates should be significantly lower than what were suggested in previous studies.

Determination of neo- and D-chiro-inositol hexakisphosphate in soils by solution 31P NMR spectroscopy

The inositol phosphates are an abundant but poorly understood group of organic phosphorus compounds found widely in the environment. Four stereoisomers of inositol hexakisphosphate (IP(6)) occur, although for three of these (scyllo, neo, and D-chiro) the origins, dynamics, and biological function remain unknown, due in large part to analytical limitations in their measurement in environmental samples. We synthesized authentic neo- and D-chiro-IP(6) and used them to identify signals from these compounds in three soils from the Falkland Islands. Both compounds resisted hypobromite oxidation and gave quantifiable (31)P NMR signals at δ = 6.67 ppm (equatorial phosphate groups of the 4-equatorial/2-axial conformer of neo-IP(6)) and δ = 6.48 ppm (equatorial phosphate groups of the 2-equatorial/4-axial conformer of D-chiro-IP(6)) in soil extracts. Inositol hexakisphosphate accounted for 46-54% of the soil organic phosphorus, of which the four stereoisomers constituted, on average, 55.9% (myo), 32.8% (scyllo), 6.1% (neo), and 5.2% (D-chiro). Reappraisal of the literature based on the new signal assignments revealed that neo- and D-chiro-IP(6) occur widely in both terrestrial and aquatic ecosystems. These results confirm that the inositol phosphates can constitute a considerable fraction of the organic phosphorus in soils and reveal the prevalence of neo- and D-chiro-IP(6) in the environment. The hypobromite oxidation and solution (31)P NMR spectroscopy procedure allows the simultaneous quantification of all four IP(6) stereoisomers in environmental samples and provides a platform for research into the origins and ecological significance of these enigmatic compounds.

High-resolution characterization of organic phosphorus in soil extracts using 2D 1H-31P NMR correlation spectroscopy

Organic phosphorus (P) compounds represent a major component of soil P in many soils and are key sources of P for microbes and plants. Solution NMR (nuclear magnetic resonance spectroscopy) is a powerful technique for characterizing organic P species. However, (31)P NMR spectra are often complicated by overlapping peaks, which hampers identification and quantification of the numerous P species present in soils. Overlap is often exacerbated by the presence of paramagnetic metal ions, even if they are in complexes with EDTA following NaOH/EDTA extraction. By removing paramagnetic impurities using a new precipitation protocol, we achieved a dramatic improvement in spectral resolution. Furthermore, the obtained reduction in line widths enabled the use of multidimensional NMR methods to resolve overlapping (31)P signals. Using the new protocol on samples from two boreal humus soils with different Fe contents, 2D (1)H-(31)P correlation spectra allowed unambiguous identification of a large number of P species based on their (31)P and (1)H chemical shifts and their characteristic coupling patterns, which would not have been possible using previous protocols. This approach can be used to identify organic P species in samples from both terrestrial and aquatic environments increasing our understanding of organic P biogeochemistry.