Self-Assembled E2L3 Cryptands (E = P, As, Sb, Bi): Transmetalation, Homo- and Heterometallic Assemblies, and Conformational Isomerism

New di-n-butyltin(iv)-bis-(1-alkoxy-isoquinoline-4-nitrile thiolate): crystallographic and computational studies

Alcohol and n-Bu2Sn2+ assisted cyclization of dithiolate yielded two unexpected organotin(iv) products, their reaction mechanism and nature of weak interactions assessed.

Main Group Supramolecular Chemistry Led to Surprising New Directions in the Self-Assembly of Organic Macrocycles, Cages, and Cyclophanes

Cyclophanes are an admirable class of macrocyclic and cage compounds that often display unusual properties due to their high strain and unusual conformations. However, the exploration of new, complex cyclophanes has been encumbered by syntheses that can be low yielding, require harsh reaction conditions, and arduous purification steps. Herein, we discuss our work using metalloid-directed self-assembly and dynamic covalent chemistry to form cryptands. These were then subjected to mild conditions to produce discrete disulfide, thioether and hydrocarbon macrocycles in high yields. ‘Design of Experiments’ was then used to selectively synthesize targeted macrocycles from complex mixtures.

1 Introduction

2 Cryptands to Cyclophanes

3 Functionalizable Macrocycles

4 ‘Design of Experiments’ Targeted Synthesis

5 Conclusions and Outlook

New main-group ferrocenyldithiocarbamates and conversion to ferrocene oxazolidine-2-thione and -2-one

Three new main-group ferrocenyl dithiocarbamates and a pure cyclised product, 3-ferrocenylmethyl-oxazolidine-2-thione, were isolated using copper powder.

SC, Schrage BR, Ziegler CJ, Gao X, Wheeler SE. Topomeric aza/thia cryptands: synthesis and theoretical aspects of in/out isomerism using n-alkyl bridging

A series of heterobicyclic aza/thia-lactams and cryptands incorporating changes in n-alkyl bridging length have been synthesized, characterized, chelated to heavy metals and computationally assessed.

Synthesis and Structure of Copper Complexes of a N6O4 Macrocyclic Ligand and Catalytic Application in Alcohol Oxidation

Reactions between N6O4 macrocyclic 1,4,19,22,25,40-hexaaza-10,13,31,34-tetraoxa-6,14,27,35(1,4)-tetrabenzenacyclopentacontane (L) and several copper salts (viz. trifuoromethane and toluene sulfonates, nitrate, perchlorate, benzoate, and acetate) led to the formation of dinuclear compounds [Cu2(OSO2CF3)2(DMF)2L](SO3CF3)2 (1), [Cu2(p-OSO2C6H4Me)2L(DMF)2](SO3C6H4Me)2 (2), [Cu2(ONO2)2L(DMF)2](NO3)2 (3), [Cu2(OClO3)2(DMF)2L](ClO4)2 (4), [Cu2(OOCPh)2L(H2O)2](O2CPh)2 (5), and [Cu2(OOCMe)4L] (6), which were characterized by IR, elemental analysis and TG-DTA (thermogravimetric-differential thermal analysis), as well as by single-crystal X-ray diffraction, EPR (electron paramagnetic resonance) spectroscopy, and electrochemical techniques (cyclic voltammetry and controlled potential electrolysis). The molecular structures of compounds 1–6 reveal a considerable conformational flexibility of the ligand L, which allowed its readjustment for the formation of the metal compounds and confirmed the presence of dinuclear endo macrocyclic species. In every case, the L ligand coordinates to each copper cation via three nitrogen atoms, with the remaining coordination positions of the metal square pyramid environment being accomplished by neutral or anionic ligands. The macrocyclic cavities appear to be adequate for the enclosure of a neutral species as proved by compound 6 with 1,4-dioxane. The compounds, in combination with the TEMPO (2,2,6,6-tetramethyl-piperidinyloxyl) radical and in alkaline aqueous solution, act as efficient catalysts in the aerobic oxidation of different alcohols to the corresponding aldehydes (yields up to 99% and TON up 232) after 20 h at 70 °C. In addition, the microwave-assisted solvent-free peroxidative oxidation (by tert-butylhydroperoxide, TBHP) of 1-phenylethanol led to acetophenone yields up to 99% and TOF of 1.1 × 103 after 0.5 h, without any additive.

Study on the Photoluminescent and Thermal Properties of Zinc Complexes with a N₆O₄ Macrocyclic Ligand

Reactions between a N₆O₄ macrocyclic ligand (L¹) and several Zn(II) salts (trifluoromethane sulfonate, p-toluenesulfonate, acetate, benzoate, o-, m- or p-hydroxybenzoate) led to the formation of seven complexes, [Zn₂L¹ (DMSO)₄](OSO₂CF₃)₄ (1), [Zn₂(p-OSO₂PhCH₃)₄L¹] (2), [Zn₂(OCOCH₃)₄L¹] (3), [Zn₂(OCOPh)₄L¹] (4), [Zn₂(o-OCOPhOH)₄L¹] (5), [Zn₂(m-OCOPhOH)₄ L¹] (6) and [Zn₂(p-OCOPhOH)₄ L¹] (7), which were characterized by elemental analysis, ¹H-NMR, ¹³C-NMR, IR, fluorescence spectroscopies and single crystal X-ray diffraction. In 1, the Zn atom is pentacoordinated with a N₃O₂ irregular trigonal bipyramidal coordination environment, like the geometries in compounds 3–7, whereas in structure 2 the metal atom is envisaged as possessing a distorted N₃O₃ octahedronal environment. All the compounds show interesting photoluminescent properties in solid states and solutions in DMF and DMSO, which are reported along with their TG-DTA thermal decomposition processes, UV-vis absorption spectroscopy and fluorescence quantum yields in DMF and DMSO.

Site-selective tagging of proteins by pnictogen-mediated self-assembly

Trivalent pnictogens (Pn) enable the selective self-assembly between an engineered di-cysteine motif in a protein and a thiol-containing lanthanide (Ln) probe.

Self-assembled trinuclear arsenic and antimony macrobicycles

The synthesis of six trinuclear Pn₃L₂ macrobicycles (Pn = As, Sb) was achieved by self-assembly of a pnictogen trichloride and a 2,4,6-trisubstituted-1,3,5-benzenetrimethanethiol ligand. ¹H-NMR spectroscopy reveals self-assembly in 1,1,2,2-tetrachloroethane is dynamic in solution producing two structural isomers. The symmetric and the asymmetric isomers (in which a single chloride ligand is cast in an opposing direction from other chlorides) of the As₃L₂ complexes exist in a ca. 2 : 1 distribution, whereas only the symmetric isomer is observed in solution for Sb₃L₂. Solvent effects appear to influence conformational isomerism and conversion to the final products. Macrobicycles were confirmed by ¹H-NMR spectroscopy and X-ray crystallography and further studied by MP2/LANL2DZ optimizations.

Chloride-catalyzed, multicomponent self-assembly of arsenic thiolates

We present the observation that chloride serves as a simple catalyst for the acceleration of a self-assembly reaction between AsCl3 and dithiolate ligands (H2L) to form As2L3 assemblies. Studies on a model monomeric arsenic complex suggest that chloride may accelerate ligand exchange dynamics in pnictogen thiolates in general.

On the Reliability of Pure and Hybrid DFT Methods for the Evaluation of Halogen, Chalcogen, and Pnicogen Bonds Involving Anionic and Neutral Electron Donors

In this article, we report a comprehensive theoretical study of halogen, chalcogen, and pnicogen bonding interactions using a large set of pure and hybrid functionals and some ab initio methods. We have observed that the pure and some hybrid functionals largely overestimate the interaction energies when the donor atom is anionic (Cl(-) or Br(-)), especially in the halogen bonding complexes. To evaluate the reliability of the different DFT (BP86, BP86-D3, BLYP, BLYP-D3, B3LYP, B97-D, B97-D3, PBE0, HSE06, APFD, and M06-2X) and ab initio (MP2, RI-MP2, and HF) methods, we have compared the binding energies and equilibrium distances to those obtained using the CCSD(T)/aug-cc-pVTZ level of theory, as reference. The addition of the latest available correction for dispersion (D3) to pure functionals is not recommended for the calculation of halogen, chalcogen, and pnicogen complexes with anions, since it further contributes to the overestimation of the binding energies. In addition, in chalcogen bonding interactions, we have studied how the hybridization of the chalcogen atom influences the interaction energies.

Ion-π interactions in ligand design for anions and main group cations

Interactions between ions and aromatic rings are now a mainstay in the field of supramolecular chemistry. The prototypical cation-π interaction, first characterized in the gas phase, is now well-known as an important contributor to protein structure and enzyme function and as a noncovalent force found in many synthetic systems. The complementary "anion-π interaction"-defined as an electrostatic attraction between an anion positioned over the centroid of an aromatic ring-has recently emerged as another reversible ion-π interaction in supramolecular systems. This type of interaction could offer new selectivity in binding poorly basic, strongly solvated anions and may also affect structure, biological function, and anion transport. This Account describes our group's efforts in ion-π interactions in two areas. We first describe a series of self-assembled Group 15 (pnictogen)-thiolate complexes, all featuring prominent cation-π interactions between the trivalent pnictogen and an aromatic ring of the ligand. This structural feature appears to stabilize a variety of self-assembled dinuclear macrocycles, dinuclear M2L3 cryptand-analogues, and a tetranuclear As4L2 metallocyclophane. These complexes are all remarkably robust and feature intramolecular cation-π interactions, which suggest that these interactions could be an important feature in ligand design for the Group 15 elements. We also highlight our efforts to characterize the interaction between anions and electron-deficient aromatic rings in solution. Complementary crystallographic and computational studies suggest that off-center weak-σ interactions play the dominant role in stabilizing the anion-arene adducts unless an acidic CH bond is present to participate in favorable CH···anion hydrogen bonds. In solution the weak-σ complexes show downfield shifts of the proton resonances in their NMR spectra. With more polarizable anions such as bromide and iodide, we also observe anion binding by UV/vis spectroscopy. Initial solution studies suggest these reversible interactions are weak in organic solvents, but the Hofmeister bias in anion binding could be mitigated, if not reversed, in the halides using these anion-π type interactions.