l-Cysteine as a Chiral Linker in Lanthanide–Cucurbit[6]uril One-Dimensional Assemblies

Encapsulation of l-valine, d-leucine and d-methionine by cucurbit[8]uril

The binding interactions of cucurbit[8]uril (Q[8]) with l-valine, d-leucine, and d-methionine, both in aqueous solution and solid state, have been studied by 1H NMR spectroscopy and X-ray crystallography.

Protein recognition by cucurbit[6]uril: high affinity N-terminal complexation

The donut-shaped cucurbit[n]urils (Qn, n = 6-8) are rigid macrocyclic receptors with widespread use in protein recognition. To date, most applications have centred on the encapsulation of N-terminal aromatic residues by Q7 or Q8. Less attention has been placed on Q6, which can recognize lysine side chains due to its high affinity for alkylamines. In this work, we investigated protein-Q6 complexation by using NMR spectroscopy. Attempts to crystallize protein-Q6 complexes were thwarted by the crystallization of Q6. We studied four proteins that vary in size, net charge, and lysine content. In addition to Q6 interactions with specific Lys or dimethylated Lys residues, we report striking evidence for N-terminal recognition. High affinity (micromolar) binding occurred with the N-terminal Met-Lys motif present in one of the four model proteins. Engineering this feature into another model protein yielded a similar high affinity site. We also present evidence for Q8 binding at this N-terminal feature. These data expand the cucurbituril toolkit for protein sensing.

Complexation of U(VI) with Cucurbit[5]uril: Thermodynamic and Structural investigation in aqueous medium

The assessment of cucurbituril (CBn) for selective removal of actinides from nuclear waste streams requires comprehensive understanding of binding parameters and coordination of these complexes. The present work is the first experimental report on complexation of actinide ion with Cucurbit[5]uril (CB5) in solution. The thermodynamic parameters (ΔG, ΔH and ΔS) for complexation of CB5 with U(VI) in formic acid water medium were determined using microcalorimetry and UV-Vis spectroscopy. The enthalpy and entropy of complexation revealed the partial binding of U(VI) to CB5 portal. The partial binding was confirmed by spectroscopic techniques viz. extended X absorption fine structure spectroscopy (EXAFS), ¹H and ¹³C NMR. The EXAFS χ(r) versus r spectra for U-CB5 complex has been fitted from 1.4 to 3.5 Å with two oxygen shells and a carbon shell. The presence of three carbon atom in secondary shell shows the involvement of only three carbonyl oxygens directly bonding to U(VI) which is in contrast to that calculated from gas phase DFT calculation of unhydrated system. The combined effect of hydration and formic acid encapsulation led to the enhanced stability of partially bound U(VI) to CB5. In the present work the binding of formic acid has also been studied by fluorescence spectroscopy. ESI-MS data shows the unusual stabilization of U(VI) by CB5 in gas phase.

The lanthanide contraction effect and organic additives impact the coordination structures of lanthanide ions with symmetrical octamethyl-substituted cucurbit[6]uril ligands

Two facts, the lanthanide contraction effect and the “bridge” role of organic additives, impact the coordination structures of lanthanide ions with OMeQ[6] ligands.

Binding and Selectivity of Essential Amino Acid Guests to the Inverted Cucurbit[7]uril Host

Interactions between inverted cucurbit[7]uril (iQ[7]) and essential amino acids have been studied at pH = 7.0 by ¹H NMR spectroscopy, electronic absorption spectroscopy, isothermal titration calorimetry, and mass spectrometry. The interactions can be divided into three binding types at pH = 7.0. Experimental results from the present study showed that the host displays a strong binding to the aromatic amino acids, Trp and Phe, and the guests of Lys, Arg, and His lie outside the cavity portal of the host. Meanwhile, the alkyl moieties of the guests Met, Leu, and Ile were accommodated within the cavity of iQ[7], but there was no significant interaction between iQ[7] and Thr or Val. The complexation behavior of iQ[7] with essential amino acids was explored at pH = 3, and the binding of Lys, Arg, and His revealed an unexpected behavior, with their side chains located in the cavity of iQ[7], whereas those of the aromatic Trp and Phe were deeper within the iQ[7] cavity. The alkyl side chains of the guests Met, Leu, Ile, Thr, and Val were also located inside the iQ[7] cavity and formed the host-guest complexes.

Synthesis and Structure of the Inclusion Complex {NdQ[5]K@Q[10](H₂O)₄}·4NO₃·20H₂O

Heating a mixture of Nd(NO₃)₃·6H₂O, KCl, Q[10] and Q[5] in HCl for 10 min affords the inclusion complex {NdQ[5]K@Q[10](H₂O)₄}·4NO₃·20H₂O. The structure of the inclusion complex has been investigated by single crystal X-ray diffraction and by X-ray Photoelectron spectroscopy (XPS).

Exploring cucurbit[6]uril–peptide interactions in the solid state: crystal structure of cucurbit[6]uril complexes with glycyl-containing dipeptides

Macrocyclic host cucurbit[6]uril forms supramolecular complexes with dipeptides sequenced as Gly-X, where X is either an aromatic amino acid residue Phe, Tyr, and Trp or Gly in the solid state.

L-Cysteine-Assisted Synthesis of Urchin-Like γ-MnS and Its Lithium Storage Properties

MnS has been attracting more and more attentions in the fields of lithium ion batteries (LIBs) because of its high energy density and low voltage potential. In this paper, we present a simple method for the preparation of urchin-like γ-MnS microstructures using L-cysteine and MnCl2 · 4H2O as the starting materials. The urchin-like γ-MnS microstructures exhibit excellent cycling stability (823.4 mA h g-1 at a current density of 500 mA g-1, after 1000 cycles). And the discharge voltage is about 0.75 V, making it a good candidate for the application as the anode material in LIBs. SEM, TEM, and XRD were employed to inspect the changes of the active materials during the electrochemical process, which clearly indicate that the structural pulverization and reformation of the γ-MnS microstructures play important roles for the maintenance of the electrochemical performance during the charge/discharge process.

Supramolecular Adducts of Cucurbit[7]uril and Amino Acids in the Gas Phase

The complexation of the macrocyclic cavitand cucurbit[7]uril (Q7) with a series of amino acids (AA) with different side chains (Asp, Asn, Gln, Ser, Ala, Val, and Ile) is investigated by ESI-MS techniques. The 1:1 [Q7 + AA + 2H](2+) adducts are observed as the base peak when equimolar Q7:AA solutions are electrosprayed, whereas the 1:2 [Q7 + 2AA + 2H](2+) dications are dominant when an excess of the amino acid is used. A combination of ion mobility mass spectrometry (IM-MS) and DFT calculations of the 1:1 [Q7 + AA + 2H](2+) (AA = Tyr, Val, and Ser) adducts is also reported and proven to be unsuccessful at discriminating between exclusion or inclusion-type conformations in the gas phase. Collision induced dissociation (CID) revealed that the preferred dissociation pathways of the 1:1 [Q7 + AA + 2H](2+) dications are strongly influenced by the identity of the amino acid side chain, whereas ion molecule reactions towards N-butylmethylamine displayed a common reactivity pattern comprising AA displacement. Special emphasis is given on the differences between the gas-phase behavior of the supramolecular adducts with amino acids (AA = Asp, Asn, Gln, Ser, Ala, Val, and Ile) and those featuring basic (Lys and Arg) and aromatic (Tyr and Phe) side chains.

Adducts of aqua complexes of Ln3+with hexahydroxyhexamethylcucurbit[6]uril: potential application in the isolation of heavy lanthanides

The interactions between a series of Ln³⁺and HHQ[6] were investigated. X-ray crystallography analysis revealed that HHQ[6] selectively interacts with certain Ln ions. The experimental results point to a possible means of isolating lighter or heavier Ln cations.

Interaction of Ln3+ with Methyl-Substituted Cucurbit[n]urils (n=5,6) Derived from 3α-Methyl Glycoluril

The interactions between a series of lanthanide cations (Ln³⁺ ) and methyl-substituted cucurbiturils (SPMeQ[5] and SHMeQ[6]) derived from a 3α-methyl glycoluril have been investigated. Single-crystal X-ray diffraction analysis revealed that both SPMeQ[5] and SHMeQ[6] selectively interact with certain lanthanide ions. SPMeQ[5] forms coordination capsules in the presence of [CdCl₄ ]^2- . The Ln³⁺ cations that interact are the four light lanthanides, La³⁺ , Ce³⁺ , Pr³⁺ , and Nd³⁺ , whereas the remaining lanthanide cations remain in solution. SHMeQ[6] formed adducts of SHMeQ[6] with aqua complexes of lanthanide cations ([Ln(H₂ O)₈ ]³⁺ ); for SHMeQ[6]-Ln(NO₃ )₃ -CdCl₂ -HCl systems (Ln=Gd-Lu), no solid crystals were obtained from systems that contained La, Ce, Pr, Nd, Sm, or Eu. Whereas solid crystals of adducts of SHMeQ[6] with aqua complexes of lanthanide cations (Ln=Sm-Lu) formed SHMeQ[6]-Ln(NO₃ )₃ systems in neutral solution, no solid crystals were obtained from systems that contained La, Ce, Pr, or Nd. These results suggest that SPMeQ[5]- and SHMeQ[6]-Ln(NO₃ )₃ systems could be useful for the selective isolation of these lighter or heavier lanthanide cations from mixtures. Energy-dispersive spectrometry indicated that the lighter or heavier lanthanide cations could be isolated from their heavier or lighter counterparts through interaction with SPMeQ[5] and SHMeQ[6].

Metal-ion-mediated assemblies of thiazole orange with cucurbit[7]uril: a photophysical study

The formation of molecular superstructures by metal-ion-mediated noncovalent self-assembly has been demonstrated using the macrocycle, cucurbit[7]uril (CB7), and the dye, thiazole orange (TO), as building blocks. Interestingly, the association of these molecular building blocks can be tuned by the chemical environment, leading to self-assembled structures of different stoichiometries, which is supported by absorption, fluorescence, (1)H NMR, and AFM measurements. Most importantly, the self-assembly process of the CB7/TO/metal ion system is observed to be remarkably different for alkali (Na(+)) and alkaline earth (Ca(2+)) metal ions. Fluorescence enhancement is observed in the presence of Ca(2+) ions, which is attributed to the formation of short dimeric structures composed of two 1:1 CB7-TO complexes. Solution turbidity is detected in the presence of Na(+) ions, which is proposed to be due to the formation of extended structures by the assembly of many 1:1 CB7-TO complexes.

Complexation of Eu(iii) with Cucurbit[n]uril, n = 5 and 7: A Thermodynamic and Structural Study

An investigation of Eu(iii) CBn complexes in solution using calorimetry, TRFS, EXAFS and DFT calculations shows the presence of Eu(iii) in different binding modes depending on the cavity size of CBn and the stoichiometry of the complex.

New lanthanide–CB[6] coordination compounds: relationships between the crystal structure and luminescent properties

Four new isostructural complexes were obtained with Ln³⁺ and CB[6]. The compounds present interesting spectroscopic properties, not observed before in Ln–CB[n] compounds.

Cucurbit[n]uril-based coordination chemistry: from simple coordination complexes to novel poly-dimensional coordination polymers

Cucurbit[n]urils are a family of molecular container hosts bearing a rigid hydrophobic cavity and two identical carbonyl fringed portals. They have attracted much attention in supramolecular chemistry because of their superior molecular recognition properties in aqueous media. This review highlights the recent advances and challenges in the field of cucurbit[n]uril-based coordination chemistry. It not only presents progress in the knowledge of such macrocyclic compounds, which range from simple to complicated architectures, but also presents new routes of synthesis and their advantages in hybrid porous solids. The concept of structure "inducer" for their structural design to achieve predictable structures and controlled pores is described. The large pore sizes and hydrophobic cavities of these compounds that lead to unprecedented properties and potential applications are also discussed.

Construction of cucurbit[7]uril based tubular nanochannels incorporating associated [CdCl4]2- and lanthanide ions

There is intensive interest in the design of tubular channels because of their novel structures and various applications in a variety of research fields. Herein, we present a series of coordination-driven Q[7]-derived organic nanochannels using an anion-induced strategy under different acid concentrations. An advantage of this approach is that the tubular channels not only retain the original character of the parent macrocyclic receptors but also provide deep hydrophobic cavities possessing guest binding sites. Importantly, this study also emphasizes the efficiency of the macrocyclic receptors in providing a tubular hydrophobic cavity by directly stacking on top of one another with the anion-fixed and by acid control. The resulting combination of hydrogen bonding, C-H···Cl, and ion-dipole interactions helps to stabilize these supramolecular architectures. Such systems are both tunable and versatile and allow for interconvertibility in the construction of nanochannels based on these macrocyclic receptors.

Theoretical prediction of the complexation behaviors of antitumor platinum drugs with cucurbiturils

The inclusion complex formation ability between CB[n] (n = 6-9) and Pt-drugs (oxaliplatin, nedaplatin, carboplatin, and cisplatin) in gas phase as well as water phases has been investigated using the using density functional theory. The results reveal the existence of several stable inclusion complexes in aqueous solution with high solvation energies compared to the guest and host molecule. It has been shown that the formation of complexes between CB[6] and Pt-drugs resulted in structural change in the CB[6], with the calculated deformation energies being higher for the inclusion complexes. The inclusion complexes are stabilized by the hydrogen bonding and the charge transfer between the Pt-drugs and the CB[n] host. Calculated enthalpy and Gibbs free energy of formation in aqueous solution revels that the formation of CB[7]-oxaliplatin is spontaneous, and hence its experimental synthesis is feasible. Among the CB's studied, CB[8]-Pt-drug inclusion complexes have exothermic enthalpy and low Gibbs free energy of formation. Computed (1)NMR spectra in CB[7]-oxaliplatin showed high chemical shielding for the cyclohexane ring, indicating the existence of charge transfer in the inclusion complex. The amine protons in the guest Pt-drugs are shielded due to the hydrogen bonding interaction with CB's oxygen portal.